MAP1S (microtubule associated protein 1S) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MAP1S (microtubule associated protein 1S) Pan paniscus
Analyze
Symbol: MAP1S
Name: microtubule associated protein 1S
RGD ID: 11917685
Description: ENCODES a protein that exhibits actin filament binding (ortholog); DNA nuclease activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); microtubule cytoskeleton organization (ortholog); nervous system development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microtubule-associated protein 1S
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,591,597 - 21,606,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,201,883 - 17,217,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,165,267 - 18,192,959 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,178,445 - 18,192,873 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAP1S
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,591,597 - 21,606,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,201,883 - 17,217,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,165,267 - 18,192,959 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,178,445 - 18,192,873 (+)Ensemblpanpan1.1panPan2
MAP1S
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,719,480 - 17,734,513 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,719,242 - 17,734,513 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,830,289 - 17,845,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,691,303 - 17,706,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,691,302 - 17,706,324NCBI
Celera1917,731,926 - 17,747,113 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,396,489 - 17,410,239 (+)NCBIHuRef
CHM1_11917,829,827 - 17,844,852 (+)NCBICHM1_1
T2T-CHM13v2.01917,853,600 - 17,868,633 (+)NCBIT2T-CHM13v2.0
Map1s
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,358,618 - 71,370,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,358,576 - 71,370,173 (+)EnsemblGRCm39 Ensembl
GRCm38870,905,974 - 70,917,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,905,932 - 70,917,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,429,873 - 73,441,428 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,834,976 - 73,846,514 (+)NCBIMGSCv36mm8
Celera873,467,068 - 73,478,623 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.41NCBI
Map1s
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,551,573 - 18,561,760 (-)NCBIGRCr8
mRatBN7.21618,516,759 - 18,527,777 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,517,574 - 18,527,988 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,559,786 - 18,569,981 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,692,464 - 19,702,659 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,612,725 - 18,622,920 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,268,663 - 20,278,850 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,267,581 - 20,278,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,126,207 - 20,136,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,017,018 - 19,027,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,017,014 - 19,027,144 (-)NCBI
Celera1618,710,209 - 18,720,404 (-)NCBICelera
Cytogenetic Map16p14NCBI
MAP1S
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,147,720 - 45,162,431 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,147,751 - 45,162,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,059,838 - 45,074,516 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,633,065 - 45,647,732 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,633,064 - 45,647,741 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,869,181 - 44,883,893 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,279,496 - 45,294,177 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,555,242 - 45,569,965 (-)NCBIUU_Cfam_GSD_1.0
Map1s
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,736,892 - 203,747,728 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,286,119 - 3,296,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,286,031 - 3,296,855 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1S
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,999,168 - 60,029,865 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,003,116 - 60,043,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,583,390 - 59,610,014 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1S
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,192,707 - 16,208,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,192,734 - 16,209,553 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,188,242 - 3,204,092 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map1s
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908400,577 - 408,129 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908400,765 - 408,154 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050795   ⟹   ENSPPAP00000027952
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1918,178,445 - 18,192,873 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050797   ⟹   ENSPPAP00000027954
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1918,179,139 - 18,192,873 (+)Ensembl
RefSeq Acc Id: XM_034944189   ⟹   XP_034800080
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBI
NHGRI_mPanPan11921,591,597 - 21,606,728 (+)NCBI
Mhudiblu_PPA_v01917,201,883 - 17,217,116 (+)NCBI
RefSeq Acc Id: XM_063600005   ⟹   XP_063456075
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBI
RefSeq Acc Id: XM_063600006   ⟹   XP_063456076
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBI
RefSeq Acc Id: XM_063600007   ⟹   XP_063456077
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22022,584,464 - 22,599,684 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034800080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456075 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456077 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027952.1
  ENSPPAP00000027954.1
Reference Protein Sequences
RefSeq Acc Id: XP_034800080   ⟸   XM_034944189
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000027954   ⟸   ENSPPAT00000050797
RefSeq Acc Id: ENSPPAP00000027952   ⟸   ENSPPAT00000050795
RefSeq Acc Id: XP_063456075   ⟸   XM_063600005
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063456076   ⟸   XM_063600006
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456077   ⟸   XM_063600007
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037035 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050795.1 UniProtKB/TrEMBL
  ENSPPAT00000050797.1 UniProtKB/TrEMBL
InterPro MAP1 UniProtKB/TrEMBL
NCBI Gene MAP1S ENTREZGENE
PANTHER PTHR13843 UniProtKB/TrEMBL
  PTHR13843:SF11 UniProtKB/TrEMBL
UniProt A0A2R9BE89_PANPA UniProtKB/TrEMBL
  A0A2R9BI46_PANPA UniProtKB/TrEMBL