MAP1S (microtubule associated protein 1S) - Rat Genome Database

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Gene: MAP1S (microtubule associated protein 1S) Homo sapiens
Analyze
Symbol: MAP1S
Name: microtubule associated protein 1S
RGD ID: 1317942
HGNC Page HGNC:15715
Description: Enables DNA binding activity and cytoskeletal protein binding activity. Involved in metaphase chromosome alignment; microtubule cytoskeleton organization; and neuron projection morphogenesis. Located in several cellular components, including microtubule cytoskeleton; nuclear lumen; and perinuclear region of cytoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BPY2 interacting protein 1; BPY2-interacting protein 1; BPY2IP1; C19orf5; FLJ10669; MAP-1S; MAP8; MGC133087; microtubule-associated protein 1S; microtubule-associated protein 8; variable charge Y chromosome 2-interacting protein 1; VCY2 interacting protein 1; VCY2-interacting protein 1; VCY2IP-1; VCY2IP1
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,719,480 - 17,734,513 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,719,242 - 17,734,513 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,830,289 - 17,845,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,691,303 - 17,706,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,691,302 - 17,706,324NCBI
Celera1917,731,926 - 17,747,113 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,396,489 - 17,410,239 (+)NCBIHuRef
CHM1_11917,829,827 - 17,844,852 (+)NCBICHM1_1
T2T-CHM13v2.01917,853,600 - 17,868,633 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11827465   PMID:12477932   PMID:12762840   PMID:14627543   PMID:14702039   PMID:15205320   PMID:15302935   PMID:15528209   PMID:15753381   PMID:15907802   PMID:15964851   PMID:16055720  
PMID:16297881   PMID:16344560   PMID:16396496   PMID:17234756   PMID:17658481   PMID:18445686   PMID:19027008   PMID:19759419   PMID:20360068   PMID:20562859   PMID:21262964   PMID:21873635  
PMID:22863883   PMID:22898364   PMID:23455922   PMID:24163370   PMID:24255178   PMID:24366813   PMID:25043887   PMID:25300793   PMID:25332235   PMID:25416956   PMID:25464930   PMID:25505242  
PMID:25515538   PMID:25640309   PMID:25900982   PMID:25921289   PMID:26167880   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26540094   PMID:26638075   PMID:26701856   PMID:28188784  
PMID:28330616   PMID:28514442   PMID:28515276   PMID:29089450   PMID:29872149   PMID:29955894   PMID:31006538   PMID:31076518   PMID:31091453   PMID:31932471   PMID:32423001   PMID:32707033  
PMID:32989298   PMID:33442234   PMID:33545068   PMID:33961781   PMID:34079125   PMID:35044719   PMID:35205757   PMID:35241646   PMID:35256949   PMID:35271311   PMID:35748872   PMID:35777956  
PMID:35914814   PMID:36114006   PMID:36215168   PMID:36538041   PMID:36634849   PMID:36736316   PMID:36774506   PMID:36880596   PMID:36892418   PMID:37827155   PMID:38113892  


Genomics

Comparative Map Data
MAP1S
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,719,480 - 17,734,513 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,719,242 - 17,734,513 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,830,289 - 17,845,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,691,303 - 17,706,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,691,302 - 17,706,324NCBI
Celera1917,731,926 - 17,747,113 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,396,489 - 17,410,239 (+)NCBIHuRef
CHM1_11917,829,827 - 17,844,852 (+)NCBICHM1_1
T2T-CHM13v2.01917,853,600 - 17,868,633 (+)NCBIT2T-CHM13v2.0
Map1s
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,358,618 - 71,370,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,358,576 - 71,370,173 (+)EnsemblGRCm39 Ensembl
GRCm38870,905,974 - 70,917,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,905,932 - 70,917,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,429,873 - 73,441,428 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,834,976 - 73,846,514 (+)NCBIMGSCv36mm8
Celera873,467,068 - 73,478,623 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.41NCBI
Map1s
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,551,573 - 18,561,760 (-)NCBIGRCr8
mRatBN7.21618,516,759 - 18,527,777 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,517,574 - 18,527,988 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,559,786 - 18,569,981 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,692,464 - 19,702,659 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,612,725 - 18,622,920 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,268,663 - 20,278,850 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,267,581 - 20,278,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,126,207 - 20,136,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,017,018 - 19,027,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,017,014 - 19,027,144 (-)NCBI
Celera1618,710,209 - 18,720,404 (-)NCBICelera
Cytogenetic Map16p14NCBI
MAP1S
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,584,448 - 22,599,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,591,597 - 21,606,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,201,883 - 17,217,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,165,267 - 18,192,959 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,178,445 - 18,192,873 (+)Ensemblpanpan1.1panPan2
MAP1S
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,147,720 - 45,162,431 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,147,751 - 45,162,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,059,838 - 45,074,516 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,633,065 - 45,647,732 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,633,064 - 45,647,741 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,869,181 - 44,883,893 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,279,496 - 45,294,177 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,555,242 - 45,569,965 (-)NCBIUU_Cfam_GSD_1.0
Map1s
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,736,892 - 203,747,728 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,286,119 - 3,296,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,286,031 - 3,296,855 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1S
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,999,168 - 60,029,865 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,003,116 - 60,043,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,583,390 - 59,610,014 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1S
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,192,707 - 16,208,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,192,734 - 16,209,553 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,188,242 - 3,204,092 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map1s
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908400,577 - 408,129 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908400,765 - 408,154 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MAP1S
71 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19p13.11-q13.11(chr19:17176767-34924150)x3 copy number gain See cases [RCV000050635] Chr19:17176767..34924150 [GRCh38]
Chr19:17287576..35415054 [GRCh37]
Chr19:17148576..40106894 [NCBI36]
Chr19:19p13.11-q13.11		 pathogenic
GRCh38/hg38 19p13.12-q11(chr19:13974677-27839676)x3 copy number gain See cases [RCV000052912] Chr19:13974677..27839676 [GRCh38]
Chr19:14085489..28330584 [GRCh37]
Chr19:13946489..33022424 [NCBI36]
Chr19:19p13.12-q11		 pathogenic
NM_018174.4(MAP1S):c.3065C>T (p.Thr1022Met) single nucleotide variant Malignant melanoma [RCV000072005] Chr19:17734313 [GRCh38]
Chr19:17845122 [GRCh37]
Chr19:17706122 [NCBI36]
Chr19:19p13.11		 not provided
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain See cases [RCV000133888] Chr19:11227942..44626354 [GRCh38]
Chr19:11338618..45129651 [GRCh37]
Chr19:11199618..49821491 [NCBI36]
Chr19:19p13.2-q13.31		 pathogenic
GRCh38/hg38 19p13.12-12(chr19:15133594-24193591)x3 copy number gain See cases [RCV000136696] Chr19:15133594..24193591 [GRCh38]
Chr19:15244405..24376393 [GRCh37]
Chr19:15105405..24168233 [NCBI36]
Chr19:19p13.12-12		 pathogenic|likely pathogenic
GRCh38/hg38 19p13.11(chr19:17246895-17730147)x1 copy number loss See cases [RCV000143571] Chr19:17246895..17730147 [GRCh38]
Chr19:17357704..17840956 [GRCh37]
Chr19:17218704..17701956 [NCBI36]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.11(chr19:17514059-17899363)x3 copy number gain See cases [RCV000240346] Chr19:17514059..17899363 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.241C>T (p.Arg81Cys) single nucleotide variant Inborn genetic diseases [RCV003246477] Chr19:17724146 [GRCh38]
Chr19:17834955 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.11-11(chr19:16526787-24631604)x3 copy number gain not provided [RCV000752593] Chr19:16526787..24631604 [GRCh37]
Chr19:19p13.11-11		 pathogenic
GRCh37/hg19 19p13.12-13.11(chr19:15970389-17893528)x1 copy number loss not provided [RCV000487468] Chr19:15970389..17893528 [GRCh37]
Chr19:19p13.12-13.11		 pathogenic
GRCh37/hg19 19p13.11(chr19:17325373-17840956)x1 copy number loss See cases [RCV000511154] Chr19:17325373..17840956 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1472A>G (p.His491Arg) single nucleotide variant Inborn genetic diseases [RCV003282721] Chr19:17726856 [GRCh38]
Chr19:17837665 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
NM_018174.6(MAP1S):c.2701G>C (p.Ala901Pro) single nucleotide variant Inborn genetic diseases [RCV003290502] Chr19:17728085 [GRCh38]
Chr19:17838894 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2180G>A (p.Arg727Gln) single nucleotide variant Inborn genetic diseases [RCV003284882] Chr19:17727564 [GRCh38]
Chr19:17838373 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.958G>T (p.Gly320Cys) single nucleotide variant Inborn genetic diseases [RCV003301012] Chr19:17726342 [GRCh38]
Chr19:17837151 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
NM_018174.6(MAP1S):c.1272C>T (p.Gly424=) single nucleotide variant not provided [RCV000881265] Chr19:17726656 [GRCh38]
Chr19:17837465 [GRCh37]
Chr19:19p13.11		 benign
NM_018174.6(MAP1S):c.2324G>T (p.Gly775Val) single nucleotide variant Inborn genetic diseases [RCV003291861] Chr19:17727708 [GRCh38]
Chr19:17838517 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.11(chr19:17639605-17992841)x3 copy number gain not provided [RCV001259369] Chr19:17639605..17992841 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.32C>G (p.Ala11Gly) single nucleotide variant Inborn genetic diseases [RCV003304714] Chr19:17719534 [GRCh38]
Chr19:17830343 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2971G>A (p.Ala991Thr) single nucleotide variant Inborn genetic diseases [RCV002684576] Chr19:17733375 [GRCh38]
Chr19:17844184 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.3013C>T (p.Arg1005Cys) single nucleotide variant Inborn genetic diseases [RCV002684002] Chr19:17733417 [GRCh38]
Chr19:17844226 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1646C>G (p.Pro549Arg) single nucleotide variant Inborn genetic diseases [RCV002773725] Chr19:17727030 [GRCh38]
Chr19:17837839 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.148G>T (p.Val50Phe) single nucleotide variant Inborn genetic diseases [RCV002945194] Chr19:17720965 [GRCh38]
Chr19:17831774 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2908C>T (p.Arg970Cys) single nucleotide variant Inborn genetic diseases [RCV002774036] Chr19:17733312 [GRCh38]
Chr19:17844121 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1553A>C (p.Glu518Ala) single nucleotide variant Inborn genetic diseases [RCV002992495] Chr19:17726937 [GRCh38]
Chr19:17837746 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2143G>C (p.Ala715Pro) single nucleotide variant Inborn genetic diseases [RCV002992028] Chr19:17727527 [GRCh38]
Chr19:17838336 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.3085G>A (p.Ala1029Thr) single nucleotide variant Inborn genetic diseases [RCV002859998] Chr19:17734333 [GRCh38]
Chr19:17845142 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2974G>A (p.Val992Ile) single nucleotide variant Inborn genetic diseases [RCV002946356] Chr19:17733378 [GRCh38]
Chr19:17844187 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1853C>T (p.Ala618Val) single nucleotide variant Inborn genetic diseases [RCV002821532] Chr19:17727237 [GRCh38]
Chr19:17838046 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1033G>A (p.Ala345Thr) single nucleotide variant Inborn genetic diseases [RCV002910802] Chr19:17726417 [GRCh38]
Chr19:17837226 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2140G>A (p.Glu714Lys) single nucleotide variant Inborn genetic diseases [RCV002952280] Chr19:17727524 [GRCh38]
Chr19:17838333 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.22G>C (p.Gly8Arg) single nucleotide variant Inborn genetic diseases [RCV002926267] Chr19:17719524 [GRCh38]
Chr19:17830333 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2963G>A (p.Gly988Asp) single nucleotide variant Inborn genetic diseases [RCV002759582] Chr19:17733367 [GRCh38]
Chr19:17844176 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1957C>T (p.Arg653Trp) single nucleotide variant Inborn genetic diseases [RCV002926277] Chr19:17727341 [GRCh38]
Chr19:17838150 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2719G>A (p.Glu907Lys) single nucleotide variant Inborn genetic diseases [RCV002704753] Chr19:17728103 [GRCh38]
Chr19:17838912 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2186C>T (p.Ser729Leu) single nucleotide variant Inborn genetic diseases [RCV002910638] Chr19:17727570 [GRCh38]
Chr19:17838379 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.959G>A (p.Gly320Asp) single nucleotide variant Inborn genetic diseases [RCV002910707] Chr19:17726343 [GRCh38]
Chr19:17837152 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.485C>T (p.Pro162Leu) single nucleotide variant Inborn genetic diseases [RCV002739634] Chr19:17725869 [GRCh38]
Chr19:17836678 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.2609A>G (p.Asn870Ser) single nucleotide variant Inborn genetic diseases [RCV002822968] Chr19:17727993 [GRCh38]
Chr19:17838802 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.1706C>G (p.Ser569Cys) single nucleotide variant Inborn genetic diseases [RCV003000687] Chr19:17727090 [GRCh38]
Chr19:17837899 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.23G>T (p.Gly8Val) single nucleotide variant Inborn genetic diseases [RCV002757754] Chr19:17719525 [GRCh38]
Chr19:17830334 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2503C>T (p.Pro835Ser) single nucleotide variant Inborn genetic diseases [RCV002823468] Chr19:17727887 [GRCh38]
Chr19:17838696 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1754G>A (p.Ser585Asn) single nucleotide variant Inborn genetic diseases [RCV002704872] Chr19:17727138 [GRCh38]
Chr19:17837947 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.3073G>A (p.Ala1025Thr) single nucleotide variant Inborn genetic diseases [RCV002787774] Chr19:17734321 [GRCh38]
Chr19:17845130 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2183G>A (p.Arg728His) single nucleotide variant Inborn genetic diseases [RCV002696893] Chr19:17727567 [GRCh38]
Chr19:17838376 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1382C>T (p.Pro461Leu) single nucleotide variant Inborn genetic diseases [RCV002986950] Chr19:17726766 [GRCh38]
Chr19:17837575 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2602C>G (p.Arg868Gly) single nucleotide variant Inborn genetic diseases [RCV002955698] Chr19:17727986 [GRCh38]
Chr19:17838795 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1513G>A (p.Glu505Lys) single nucleotide variant Inborn genetic diseases [RCV002891932] Chr19:17726897 [GRCh38]
Chr19:17837706 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.522C>G (p.Asp174Glu) single nucleotide variant Inborn genetic diseases [RCV002788317] Chr19:17725906 [GRCh38]
Chr19:17836715 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1741C>A (p.Arg581Ser) single nucleotide variant Inborn genetic diseases [RCV002701565] Chr19:17727125 [GRCh38]
Chr19:17837934 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1592C>T (p.Pro531Leu) single nucleotide variant Inborn genetic diseases [RCV002956714] Chr19:17726976 [GRCh38]
Chr19:17837785 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2610C>G (p.Asn870Lys) single nucleotide variant Inborn genetic diseases [RCV002804069] Chr19:17727994 [GRCh38]
Chr19:17838803 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1781C>G (p.Pro594Arg) single nucleotide variant Inborn genetic diseases [RCV003004724] Chr19:17727165 [GRCh38]
Chr19:17837974 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2809G>A (p.Gly937Arg) single nucleotide variant Inborn genetic diseases [RCV002957013] Chr19:17733213 [GRCh38]
Chr19:17844022 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2318G>A (p.Arg773Gln) single nucleotide variant Inborn genetic diseases [RCV002719570] Chr19:17727702 [GRCh38]
Chr19:17838511 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2345C>T (p.Thr782Met) single nucleotide variant Inborn genetic diseases [RCV002965150] Chr19:17727729 [GRCh38]
Chr19:17838538 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2909G>A (p.Arg970His) single nucleotide variant Inborn genetic diseases [RCV002674308] Chr19:17733313 [GRCh38]
Chr19:17844122 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1699A>G (p.Ser567Gly) single nucleotide variant Inborn genetic diseases [RCV002963607] Chr19:17727083 [GRCh38]
Chr19:17837892 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1567C>T (p.Arg523Trp) single nucleotide variant Inborn genetic diseases [RCV002672821] Chr19:17726951 [GRCh38]
Chr19:17837760 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1228G>T (p.Ala410Ser) single nucleotide variant Inborn genetic diseases [RCV002963524] Chr19:17726612 [GRCh38]
Chr19:17837421 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2176G>C (p.Ala726Pro) single nucleotide variant Inborn genetic diseases [RCV002747545] Chr19:17727560 [GRCh38]
Chr19:17838369 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2614C>G (p.Arg872Gly) single nucleotide variant Inborn genetic diseases [RCV002679104] Chr19:17727998 [GRCh38]
Chr19:17838807 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.2581C>A (p.Arg861Ser) single nucleotide variant Inborn genetic diseases [RCV002656026] Chr19:17727965 [GRCh38]
Chr19:17838774 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1649A>G (p.Asn550Ser) single nucleotide variant Inborn genetic diseases [RCV003192257] Chr19:17727033 [GRCh38]
Chr19:17837842 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.3089G>A (p.Arg1030Gln) single nucleotide variant Inborn genetic diseases [RCV003184919] Chr19:17734337 [GRCh38]
Chr19:17845146 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.3174G>C (p.Glu1058Asp) single nucleotide variant Inborn genetic diseases [RCV003206190] Chr19:17734422 [GRCh38]
Chr19:17845231 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2929G>A (p.Val977Ile) single nucleotide variant Inborn genetic diseases [RCV003175688] Chr19:17733333 [GRCh38]
Chr19:17844142 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1031C>T (p.Ala344Val) single nucleotide variant Inborn genetic diseases [RCV003207308] Chr19:17726415 [GRCh38]
Chr19:17837224 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1762T>C (p.Cys588Arg) single nucleotide variant Inborn genetic diseases [RCV003309253] Chr19:17727146 [GRCh38]
Chr19:17837955 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.1049G>A (p.Arg350His) single nucleotide variant Inborn genetic diseases [RCV003287470] Chr19:17726433 [GRCh38]
Chr19:17837242 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.181G>C (p.Val61Leu) single nucleotide variant Inborn genetic diseases [RCV003379069] Chr19:17720998 [GRCh38]
Chr19:17831807 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.877C>T (p.Pro293Ser) single nucleotide variant Inborn genetic diseases [RCV003345853] Chr19:17726261 [GRCh38]
Chr19:17837070 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.13G>A (p.Ala5Thr) single nucleotide variant Inborn genetic diseases [RCV003377130] Chr19:17719515 [GRCh38]
Chr19:17830324 [GRCh37]
Chr19:19p13.11		 likely benign
NM_018174.6(MAP1S):c.1265G>T (p.Gly422Val) single nucleotide variant Inborn genetic diseases [RCV003373618] Chr19:17726649 [GRCh38]
Chr19:17837458 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.2783C>T (p.Pro928Leu) single nucleotide variant Inborn genetic diseases [RCV003353939] Chr19:17728167 [GRCh38]
Chr19:17838976 [GRCh37]
Chr19:19p13.11		 uncertain significance
NM_018174.6(MAP1S):c.265G>A (p.Val89Ile) single nucleotide variant Inborn genetic diseases [RCV003376855] Chr19:17724170 [GRCh38]
Chr19:17834979 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.11(chr19:17658932-17883270)x1 copy number loss not provided [RCV003483347] Chr19:17658932..17883270 [GRCh37]
Chr19:19p13.11		 uncertain significance
GRCh37/hg19 19p13.13-13.11(chr19:13970692-18139376)x3 copy number gain not specified [RCV003986122] Chr19:13970692..18139376 [GRCh37]
Chr19:19p13.13-13.11		 uncertain significance
GRCh37/hg19 19p13.12-12(chr19:14286624-20956753)x3 copy number gain not provided [RCV001259370] Chr19:14286624..20956753 [GRCh37]
Chr19:19p13.12-12		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7124
Count of miRNA genes:1018
Interacting mature miRNAs:1241
Transcripts:ENST00000324096, ENST00000544059, ENST00000593593, ENST00000594212, ENST00000594340, ENST00000594365, ENST00000594625, ENST00000595338, ENST00000596637, ENST00000597000, ENST00000597067, ENST00000597681, ENST00000597735, ENST00000598756, ENST00000598769, ENST00000598916, ENST00000599494, ENST00000600186, ENST00000600608, ENST00000601097, ENST00000601544
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D19S1132  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371917,845,111 - 17,845,243UniSTSGRCh37
Build 361917,706,111 - 17,706,243RGDNCBI36
Celera1917,746,900 - 17,747,032RGD
Cytogenetic Map19p13.11UniSTS
HuRef1917,410,026 - 17,410,158UniSTS
RH103228  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371917,844,208 - 17,845,203UniSTSGRCh37
Celera1917,745,997 - 17,746,992UniSTS
Cytogenetic Map19p13.11UniSTS
HuRef1917,409,123 - 17,410,118UniSTS
GeneMap99-GB4 RH Map1998.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2150 1955 1125 209 1552 85 3219 1449 2923 263 1389 1584 140 1 1167 2098 5 2
Low 289 1036 601 415 398 380 1138 748 811 154 71 29 35 37 690 1
Below cutoff 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001308363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA905204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB062430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ440784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG771546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA392500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB081409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB097723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC401920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ387861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000324096   ⟹   ENSP00000325313
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,480 - 17,734,513 (+)Ensembl
RefSeq Acc Id: ENST00000544059   ⟹   ENSP00000439243
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,156 - 17,734,490 (+)Ensembl
RefSeq Acc Id: ENST00000593593   ⟹   ENSP00000468878
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,164 - 17,725,089 (+)Ensembl
RefSeq Acc Id: ENST00000594212   ⟹   ENSP00000469123
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,480 - 17,726,543 (+)Ensembl
RefSeq Acc Id: ENST00000594340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,771 - 17,725,964 (+)Ensembl
RefSeq Acc Id: ENST00000594365   ⟹   ENSP00000469232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,161 - 17,726,000 (+)Ensembl
RefSeq Acc Id: ENST00000594625   ⟹   ENSP00000469571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,242 - 17,725,953 (+)Ensembl
RefSeq Acc Id: ENST00000595338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,201 - 17,725,917 (+)Ensembl
RefSeq Acc Id: ENST00000596637   ⟹   ENSP00000469854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,191 - 17,724,195 (+)Ensembl
RefSeq Acc Id: ENST00000597000   ⟹   ENSP00000471994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,727,438 - 17,734,513 (+)Ensembl
RefSeq Acc Id: ENST00000597067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,781 - 17,725,855 (+)Ensembl
RefSeq Acc Id: ENST00000597681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,497 - 17,728,111 (+)Ensembl
RefSeq Acc Id: ENST00000597735   ⟹   ENSP00000469321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,480 - 17,733,338 (+)Ensembl
RefSeq Acc Id: ENST00000598756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,728,148 - 17,734,350 (+)Ensembl
RefSeq Acc Id: ENST00000598769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,724 - 17,726,007 (+)Ensembl
RefSeq Acc Id: ENST00000598916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,752 - 17,725,975 (+)Ensembl
RefSeq Acc Id: ENST00000599494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,720,136 - 17,726,050 (+)Ensembl
RefSeq Acc Id: ENST00000600186   ⟹   ENSP00000471903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,480 - 17,726,050 (+)Ensembl
RefSeq Acc Id: ENST00000600608   ⟹   ENSP00000470306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,480 - 17,724,208 (+)Ensembl
RefSeq Acc Id: ENST00000601097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,733,020 - 17,734,513 (+)Ensembl
RefSeq Acc Id: ENST00000601544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,719,484 - 17,725,944 (+)Ensembl
RefSeq Acc Id: NM_001308363   ⟹   NP_001295292
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381917,720,156 - 17,734,513 (+)NCBI
CHM1_11917,830,489 - 17,844,852 (+)NCBI
T2T-CHM13v2.01917,854,276 - 17,868,633 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018174   ⟹   NP_060644
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381917,719,480 - 17,734,513 (+)NCBI
GRCh371917,830,303 - 17,845,324 (+)ENTREZGENE
Build 361917,691,303 - 17,706,324 (+)NCBI Archive
HuRef1917,396,489 - 17,410,239 (+)ENTREZGENE
CHM1_11917,829,785 - 17,844,852 (+)NCBI
T2T-CHM13v2.01917,853,600 - 17,868,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054321358   ⟹   XP_054177333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01917,854,033 - 17,868,633 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_060644   ⟸   NM_018174
- Peptide Label: isoform 1
- UniProtKB: Q9H928 (UniProtKB/Swiss-Prot),   Q9BRC6 (UniProtKB/Swiss-Prot),   Q96SP8 (UniProtKB/Swiss-Prot),   Q96IT4 (UniProtKB/Swiss-Prot),   Q96H94 (UniProtKB/Swiss-Prot),   Q8NI88 (UniProtKB/Swiss-Prot),   Q8N3W5 (UniProtKB/Swiss-Prot),   Q8N3L8 (UniProtKB/Swiss-Prot),   Q6NXF1 (UniProtKB/Swiss-Prot),   Q27QB1 (UniProtKB/Swiss-Prot),   B4DH53 (UniProtKB/Swiss-Prot),   Q9NVK7 (UniProtKB/Swiss-Prot),   Q66K74 (UniProtKB/Swiss-Prot),   A8K940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001295292   ⟸   NM_001308363
- Peptide Label: isoform 2
- UniProtKB: A8K940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000469571   ⟸   ENST00000594625
RefSeq Acc Id: ENSP00000469854   ⟸   ENST00000596637
RefSeq Acc Id: ENSP00000469321   ⟸   ENST00000597735
RefSeq Acc Id: ENSP00000439243   ⟸   ENST00000544059
RefSeq Acc Id: ENSP00000471994   ⟸   ENST00000597000
RefSeq Acc Id: ENSP00000325313   ⟸   ENST00000324096
RefSeq Acc Id: ENSP00000471903   ⟸   ENST00000600186
RefSeq Acc Id: ENSP00000470306   ⟸   ENST00000600608
RefSeq Acc Id: ENSP00000468878   ⟸   ENST00000593593
RefSeq Acc Id: ENSP00000469232   ⟸   ENST00000594365
RefSeq Acc Id: ENSP00000469123   ⟸   ENST00000594212
RefSeq Acc Id: XP_054177333   ⟸   XM_054321358
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66K74-F1-model_v2 AlphaFold Q66K74 1-1059 view protein structure

Promoters
RGD ID:6796283
Promoter ID:HG_KWN:29261
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000324096,   UC002NHF.1,   UC010EAZ.1,   UC010EBA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361917,690,979 - 17,691,479 (+)MPROMDB
RGD ID:6815257
Promoter ID:HG_MRA:7917
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:AK294936
Position:
Human AssemblyChrPosition (strand)Source
Build 361917,691,961 - 17,692,461 (+)MPROMDB
RGD ID:6811666
Promoter ID:HG_ACW:40447
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:MAP1S.SAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361917,699,201 - 17,699,701 (+)MPROMDB
RGD ID:7239057
Promoter ID:EPDNEW_H25275
Type:multiple initiation site
Name:MAP1S_1
Description:microtubule associated protein 1S
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381917,719,480 - 17,719,540EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15715 AgrOrtholog
COSMIC MAP1S COSMIC
Ensembl Genes ENSG00000130479 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000324096 ENTREZGENE
  ENST00000324096.9 UniProtKB/Swiss-Prot
  ENST00000544059 ENTREZGENE
  ENST00000544059.2 UniProtKB/Swiss-Prot
  ENST00000593593.5 UniProtKB/TrEMBL
  ENST00000594212.5 UniProtKB/TrEMBL
  ENST00000594365.5 UniProtKB/TrEMBL
  ENST00000594625.5 UniProtKB/TrEMBL
  ENST00000596637.5 UniProtKB/TrEMBL
  ENST00000597000.1 UniProtKB/TrEMBL
  ENST00000597735.5 UniProtKB/TrEMBL
  ENST00000600186.5 UniProtKB/TrEMBL
  ENST00000600608.5 UniProtKB/TrEMBL
GTEx ENSG00000130479 GTEx
HGNC ID HGNC:15715 ENTREZGENE
Human Proteome Map MAP1S Human Proteome Map
InterPro MAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55201 UniProtKB/Swiss-Prot
NCBI Gene 55201 ENTREZGENE
OMIM 607573 OMIM
PANTHER PTHR13843 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13843:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38031 PharmGKB
UniProt A8K940 ENTREZGENE, UniProtKB/TrEMBL
  B4DH53 ENTREZGENE
  M0QX37_HUMAN UniProtKB/TrEMBL
  M0QXE8_HUMAN UniProtKB/TrEMBL
  M0QXK6_HUMAN UniProtKB/TrEMBL
  M0QXQ9_HUMAN UniProtKB/TrEMBL
  M0QY41_HUMAN UniProtKB/TrEMBL
  M0QYI5_HUMAN UniProtKB/TrEMBL
  M0QZ50_HUMAN UniProtKB/TrEMBL
  M0R1J2_HUMAN UniProtKB/TrEMBL
  M0R1M7_HUMAN UniProtKB/TrEMBL
  MAP1S_HUMAN UniProtKB/Swiss-Prot
  Q27QB1 ENTREZGENE
  Q66K74 ENTREZGENE
  Q6NXF1 ENTREZGENE
  Q8N3L8 ENTREZGENE
  Q8N3W5 ENTREZGENE
  Q8NI88 ENTREZGENE
  Q96H94 ENTREZGENE
  Q96IT4 ENTREZGENE
  Q96SP8 ENTREZGENE
  Q9BRC6 ENTREZGENE
  Q9H928 ENTREZGENE
  Q9NVK7 ENTREZGENE
UniProt Secondary B4DH53 UniProtKB/Swiss-Prot
  Q27QB1 UniProtKB/Swiss-Prot
  Q6NXF1 UniProtKB/Swiss-Prot
  Q8N3L8 UniProtKB/Swiss-Prot
  Q8N3W5 UniProtKB/Swiss-Prot
  Q8NI88 UniProtKB/Swiss-Prot
  Q96H94 UniProtKB/Swiss-Prot
  Q96IT4 UniProtKB/Swiss-Prot
  Q96SP8 UniProtKB/Swiss-Prot
  Q9BRC6 UniProtKB/Swiss-Prot
  Q9H928 UniProtKB/Swiss-Prot
  Q9NVK7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 MAP1S  microtubule associated protein 1S    microtubule-associated protein 1S  Symbol and/or name change 5135510 APPROVED