RPL5 (ribosomal protein L5) - Rat Genome Database

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Gene: RPL5 (ribosomal protein L5) Sus scrofa
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Symbol: RPL5
Name: ribosomal protein L5
RGD ID: 14238667
Description: ENCODES a protein that exhibits 5S rRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN negative regulation of protein neddylation (ortholog); negative regulation of ubiquitin protein ligase activity (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN p53 signaling pathway; ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH aplastic anemia (ortholog); congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L5; large ribosomal subunit protein uL18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,358,594 - 124,367,645 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,359,786 - 124,367,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24135,982,736 - 135,990,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,358,594 - 124,367,645 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,359,786 - 124,367,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24135,982,736 - 135,990,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,831,986 - 92,841,924 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,832,013 - 92,841,924 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,297,543 - 93,307,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,070,182 - 93,080,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,009,630 - 93,019,501NCBI
Celera191,551,185 - 91,561,073 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef191,418,759 - 91,428,647 (+)NCBIHuRef
CHM1_1193,412,392 - 93,422,277 (+)NCBICHM1_1
T2T-CHM13v2.0192,677,128 - 92,687,066 (+)NCBIT2T-CHM13v2.0
Rpl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,048,388 - 108,056,871 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,048,368 - 108,056,871 (+)EnsemblGRCm39 Ensembl
GRCm385107,900,508 - 107,909,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,900,502 - 107,909,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,329,547 - 108,338,024 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,329,609 - 108,337,069 (+)NCBIMGSCv36mm8
Celera5105,013,413 - 105,021,863 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map558.5NCBI
Rpl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,988,792 - 1,995,236 (-)NCBIGRCr8
mRatBN7.2141,843,856 - 1,850,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,843,770 - 1,850,290 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,722,761 - 1,729,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,024,541 - 3,030,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,721,230 - 1,727,668 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,860,963 - 2,867,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,860,965 - 2,867,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,861,092 - 2,867,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,397,640 - 2,404,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,397,639 - 2,404,072 (-)NCBI
Celera141,863,797 - 1,870,229 (-)NCBICelera
Cytogenetic Map14p22NCBI
Rpl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554231,748,809 - 1,758,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554231,748,809 - 1,758,622 (-)NCBIChiLan1.0ChiLan1.0
RPL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,179,007 - 134,189,039 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,333,923 - 133,344,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,497,047 - 95,507,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,231,605 - 94,241,522 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,230,451 - 94,241,522 (+)Ensemblpanpan1.1panPan2
RPL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,207,171 - 56,216,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,207,173 - 56,215,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha658,904,824 - 58,915,282 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0656,582,922 - 56,593,715 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,582,927 - 56,593,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,262,557 - 56,272,992 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,240,615 - 56,251,042 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0656,700,600 - 56,711,209 (-)NCBIUU_Cfam_GSD_1.0
Rpl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,602,706 - 102,606,012 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365376,341,961 - 6,344,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,416,553 - 40,427,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,413,897 - 40,427,060 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603377,589,297 - 77,599,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247424,973,229 - 4,983,361 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL5
334 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007554   ⟹   ENSSSCP00000007354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4124,358,594 - 124,366,529 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000040918   ⟹   ENSSSCP00000046769
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4124,358,594 - 124,367,645 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000067358   ⟹   ENSSSCP00000067120
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4124,358,594 - 124,366,529 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085097   ⟹   ENSSSCP00000065449
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4124,358,594 - 124,367,645 (-)Ensembl
RefSeq Acc Id: NM_001114284   ⟹   NP_001107756
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14124,359,786 - 124,367,612 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001107756   ⟸   NM_001114284
- UniProtKB: B0FWK5 (UniProtKB/TrEMBL),   A0A287ASD0 (UniProtKB/TrEMBL),   A0A4X1U3L7 (UniProtKB/TrEMBL),   A0A8D1QIY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000046769   ⟸   ENSSSCT00000040918
Ensembl Acc Id: ENSSSCP00000065449   ⟸   ENSSSCT00000085097
Ensembl Acc Id: ENSSSCP00000007354   ⟸   ENSSSCT00000007554
Ensembl Acc Id: ENSSSCP00000067120   ⟸   ENSSSCT00000067358

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006899 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015017876 UniProtKB/TrEMBL
  ENSSSCG00025077332 UniProtKB/TrEMBL
  ENSSSCG00030018070 UniProtKB/TrEMBL
  ENSSSCG00035002185 UniProtKB/TrEMBL
  ENSSSCG00040012752 UniProtKB/TrEMBL
  ENSSSCG00045000467 UniProtKB/TrEMBL
  ENSSSCG00050072727 UniProtKB/TrEMBL
  ENSSSCG00055014101 UniProtKB/TrEMBL
  ENSSSCG00060001350 UniProtKB/TrEMBL
  ENSSSCG00065076483 UniProtKB/TrEMBL
  ENSSSCG00070013768 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007554.5 UniProtKB/TrEMBL
  ENSSSCT00000040918 ENTREZGENE
  ENSSSCT00000040918.3 UniProtKB/TrEMBL
  ENSSSCT00000067358.2 UniProtKB/TrEMBL
  ENSSSCT00000085097.2 UniProtKB/TrEMBL
  ENSSSCT00015024761.1 UniProtKB/TrEMBL
  ENSSSCT00025107456.1 UniProtKB/TrEMBL
  ENSSSCT00030025003.1 UniProtKB/TrEMBL
  ENSSSCT00035002748.1 UniProtKB/TrEMBL
  ENSSSCT00040017429.1 UniProtKB/TrEMBL
  ENSSSCT00045000718.1 UniProtKB/TrEMBL
  ENSSSCT00050099355.1 UniProtKB/TrEMBL
  ENSSSCT00055028320.1 UniProtKB/TrEMBL
  ENSSSCT00060001649.1 UniProtKB/TrEMBL
  ENSSSCT00065105662.1 UniProtKB/TrEMBL
  ENSSSCT00070026959.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Rbsml_L5_euk/L18_arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rbsml_L5e/L18P_C UniProtKB/TrEMBL
KEGG Report ssc:100135671 UniProtKB/TrEMBL
NCBI Gene RPL5 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L5 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L5 UniProtKB/TrEMBL
  PTHR23410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L18_c UniProtKB/TrEMBL
  Ribosomal_L5e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RIBOSOMALL5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Translational machinery components UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287ASD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TYB5_PIG UniProtKB/TrEMBL
  A0A4X1U3L7 ENTREZGENE
  A0A4X1U3N9_PIG UniProtKB/TrEMBL
  A0A8D0MVZ5_PIG UniProtKB/TrEMBL
  A0A8D1QIY7 ENTREZGENE, UniProtKB/TrEMBL
  B0FWK5 ENTREZGENE, UniProtKB/TrEMBL
  Q95276 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A4X1U3L7 UniProtKB/TrEMBL
  A0A5G2QKU0 UniProtKB/TrEMBL
  A0A5G2R941 UniProtKB/TrEMBL
  F1S530 UniProtKB/TrEMBL
VGNC ID VGNC:109640 ENTREZGENE