SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200) - Rat Genome Database

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Gene: SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200) Sus scrofa
Analyze
Symbol: SNRNP200
Name: small nuclear ribonucleoprotein U5 subunit 200
RGD ID: 14233851
Description: ENCODES a protein that exhibits ATP binding (inferred); helicase activity (inferred); hydrolase activity (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); cilium (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein 200kDa (U5); U5 small nuclear ribonucleoprotein 200 kDa helicase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,929,066 - 46,960,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,025,370 - 49,042,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200Pigcone-rod dystrophy  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: Rod-cone dystrophyClinVarPMID:23847139 more ...
SNRNP200Pigfundus dystrophy  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:16612614 more ...
SNRNP200Piggenetic disease  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:19878916 more ...
SNRNP200Pigintellectual disability  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigretinitis pigmentosa 33  ISOSNRNP200 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16612614 more ...
SNRNP200Pigschizophrenia  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
SNRNP200PigStargardt disease  ISOSNRNP200 (Homo sapiens)8554872ClinVar Annotator: match by term: Stargardt diseaseClinVarPMID:30718709
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200Pigretinitis pigmentosa 33  ISOSNRNP200 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200PigmRNA processing involved_inIEAARBA:ARBA00028222150520179 UniProtGO_REF:0000117
SNRNP200PigmRNA splicing, via spliceosome involved_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pigresolution of meiotic recombination intermediates involved_inIBAMGI:3036246 and PANTHER:PTN002772475150520179 GO_CentralGO_REF:0000033
SNRNP200Pigspliceosome conformational change to release U4 (or U4atac) and U1 (or U11) involved_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107

Cellular Component
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200Pigcatalytic step 2 spliceosome part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pigcilium located_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pignucleoplasm located_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pignucleus located_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pignucleus is_active_inIBAPANTHER:PTN002772343 more ...150520179 GO_CentralGO_REF:0000033
SNRNP200Pigplasma membrane located_inIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pigribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043
SNRNP200Pigspliceosomal complex part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200PigU2-type catalytic step 1 spliceosome part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200PigU2-type precatalytic spliceosome part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200PigU4/U6 x U5 tri-snRNP complex part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200PigU5 snRNP part_ofIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
1 to 12 of 12 rows

Molecular Function
1 to 20 of 28 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200PigATP binding enablesIEAUniProtKB-KW:KW-0067150520179 UniProtGO_REF:0000043
SNRNP200PigATP binding enablesIEAInterPro:IPR011545150520179 InterProGO_REF:0000002
SNRNP200PigDNA helicase activity enablesIBAPANTHER:PTN002772475 and SGD:S000003220150520179 GO_CentralGO_REF:0000033
SNRNP200Pighelicase activity enablesIEAUniProtKB-KW:KW-0347150520179 UniProtGO_REF:0000043
SNRNP200Pighelicase activity enablesIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pighydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
SNRNP200Pigidentical protein binding enablesIEAUniProtKB:O75643 and ensembl:ENSP00000317123150520179 EnsemblGO_REF:0000107
SNRNP200Pignucleic acid binding enablesIEAInterPro:IPR011545150520179 InterProGO_REF:0000002
SNRNP200Pignucleotide binding enablesIEAUniProtKB-KW:KW-0547150520179 UniProtGO_REF:0000043
SNRNP200Pigprotein binding enablesISOUniProtKB:P527569068941 PMID:18951082UniProtPMID:18951082
SNRNP200Pigprotein binding enablesISOUniProtKB:Q150299068941 PMID:39251607IntActPMID:39251607
SNRNP200Pigprotein binding enablesISOUniProtKB:Q9H8H39068941 PMID:34790668UniProtPMID:34790668
SNRNP200Pigprotein binding enablesISOUniProtKB:Q6P2Q99068941 PMID:23704370IntActPMID:23704370
SNRNP200Pigprotein binding enablesISOUniProtKB:Q6P2Q9 and UniProtKB:Q96DI79068941 PMID:9774689IntActPMID:9774689
SNRNP200Pigprotein binding enablesISOUniProtKB:Q96DI79068941 PMID:28514442IntActPMID:28514442
SNRNP200Pigprotein binding enablesISOUniProtKB:Q9NZ639068941 PMID:35241646UniProtPMID:35241646
SNRNP200Pigprotein binding enablesISOUniProtKB:O949069068941 PMID:27173435IntActPMID:27173435
SNRNP200Pigprotein binding enablesISOUniProtKB:Q8IWS09068941 PMID:22720776UniProtPMID:22720776
SNRNP200Pigprotein binding enablesISOUniProtKB:Q7LBR19068941 PMID:16730941IntActPMID:16730941
SNRNP200Pigprotein binding enablesISOUniProtKB:P52298 and UniProtKB:Q091619068941 PMID:23793891CAFAPMID:23793891
1 to 20 of 28 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRNP200Pigspliceosome pathway   ISOSNRNP200 (Homo sapiens)9068941 RGDPMID:23454554 more ...
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  



SNRNP200
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,929,066 - 46,960,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,025,370 - 49,042,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP200
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,274,338 - 96,305,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,274,338 - 96,321,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,940,076 - 96,971,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,303,801 - 96,334,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 34296,361,948 - 96,393,135NCBI
Celera291,381,262 - 91,412,485 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,901,571 - 90,932,785 (-)NCBIHuRef
CHM1_1296,944,413 - 96,975,645 (-)NCBICHM1_1
T2T-CHM13v2.0296,780,946 - 96,812,154 (-)NCBIT2T-CHM13v2.0
Snrnp200
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,050,306 - 127,082,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,050,306 - 127,082,371 (+)EnsemblGRCm39 Ensembl
GRCm382127,208,386 - 127,240,453 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,208,386 - 127,240,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,034,140 - 127,066,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,899,845 - 126,931,892 (+)NCBIMGSCv36mm8
Celera2128,447,628 - 128,479,812 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.84NCBI
Snrnp200
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,882,173 - 134,911,512 (+)NCBIGRCr8
mRatBN7.23114,428,854 - 114,458,194 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,428,854 - 114,458,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,320,397 - 118,349,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,915,943 - 126,945,291 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,576,324 - 124,605,671 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,640,324 - 119,669,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,640,298 - 119,669,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,165,542 - 126,194,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,708,628 - 114,738,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,269,406 - 113,298,872 (+)NCBICelera
Cytogenetic Map3q36NCBI
Snrnp200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,828,943 - 3,856,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,828,943 - 3,856,059 (-)NCBIChiLan1.0ChiLan1.0
SNRNP200
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,003,221 - 32,034,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,005,981 - 32,036,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,010,083 - 103,040,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,197,137 - 97,228,511 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,197,137 - 97,228,511 (-)Ensemblpanpan1.1panPan2
SNRNP200
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,472,638 - 34,505,332 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,472,767 - 34,505,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,243,105 - 34,275,448 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,244,241 - 35,276,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,244,268 - 35,277,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,373,226 - 34,405,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,432,063 - 34,474,517 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,648,453 - 34,681,099 (+)NCBIUU_Cfam_GSD_1.0
SNRNP200
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114693,873 - 724,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14694,126 - 724,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,120,462 - 168,150,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp200
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,351,373 - 2,378,159 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,351,476 - 2,378,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in SNRNP200
783 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000008903   ⟹   ENSSSCP00000008677
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000051137   ⟹   ENSSSCP00000051899
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl346,929,136 - 46,960,957 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066687   ⟹   ENSSSCP00000073361
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl346,932,213 - 46,957,972 (+)Ensembl
RefSeq Acc Id: XM_021087098   ⟹   XP_020942757
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1346,929,066 - 46,960,420 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087099   ⟹   XP_020942758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1346,929,169 - 46,960,420 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020942757   ⟸   XM_021087098
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VY26 (UniProtKB/TrEMBL),   F1SU44 (UniProtKB/TrEMBL),   K9J4V0 (UniProtKB/TrEMBL),   A0A8D1TH80 (UniProtKB/TrEMBL),   A0A8D0U946 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942758   ⟸   XM_021087099
- Peptide Label: isoform X2
- UniProtKB: A0A8D1E8V2 (UniProtKB/TrEMBL),   A0A8D1TH80 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000051899   ⟸   ENSSSCT00000051137
Ensembl Acc Id: ENSSSCP00000073361   ⟸   ENSSSCT00000066687
Ensembl Acc Id: ENSSSCP00000008677   ⟸   ENSSSCT00000008903


1 to 40 of 98 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000008127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015060724 UniProtKB/TrEMBL
  ENSSSCG00025077103 UniProtKB/TrEMBL
  ENSSSCG00030052285 UniProtKB/TrEMBL
  ENSSSCG00035072933 UniProtKB/TrEMBL
  ENSSSCG00040032999 UniProtKB/TrEMBL
  ENSSSCG00045000818 UniProtKB/TrEMBL
  ENSSSCG00050047119 UniProtKB/TrEMBL
  ENSSSCG00055023704 UniProtKB/TrEMBL
  ENSSSCG00060041255 UniProtKB/TrEMBL
  ENSSSCG00065018543 UniProtKB/TrEMBL
  ENSSSCG00070027513 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008903 ENTREZGENE
  ENSSSCT00000008903.5 UniProtKB/TrEMBL
  ENSSSCT00000051137.3 UniProtKB/TrEMBL
  ENSSSCT00000066687 ENTREZGENE
  ENSSSCT00000066687.2 UniProtKB/TrEMBL
  ENSSSCT00015083193.1 UniProtKB/TrEMBL
  ENSSSCT00015083560.1 UniProtKB/TrEMBL
  ENSSSCT00025107034.1 UniProtKB/TrEMBL
  ENSSSCT00025107060.1 UniProtKB/TrEMBL
  ENSSSCT00030073098.1 UniProtKB/TrEMBL
  ENSSSCT00030073141.1 UniProtKB/TrEMBL
  ENSSSCT00030073188.1 UniProtKB/TrEMBL
  ENSSSCT00035098900.1 UniProtKB/TrEMBL
  ENSSSCT00035098910.1 UniProtKB/TrEMBL
  ENSSSCT00035098920.1 UniProtKB/TrEMBL
  ENSSSCT00040045116.1 UniProtKB/TrEMBL
  ENSSSCT00040045180.1 UniProtKB/TrEMBL
  ENSSSCT00040045269.1 UniProtKB/TrEMBL
  ENSSSCT00040045366.1 UniProtKB/TrEMBL
  ENSSSCT00040045418.1 UniProtKB/TrEMBL
  ENSSSCT00045001356.1 UniProtKB/TrEMBL
  ENSSSCT00045001377.1 UniProtKB/TrEMBL
  ENSSSCT00045001404.1 UniProtKB/TrEMBL
  ENSSSCT00050064187.1 UniProtKB/TrEMBL
  ENSSSCT00050064245.1 UniProtKB/TrEMBL
  ENSSSCT00050064246.1 UniProtKB/TrEMBL
  ENSSSCT00050064265.1 UniProtKB/TrEMBL
  ENSSSCT00055047269.1 UniProtKB/TrEMBL
1 to 40 of 98 rows