IFT172 (intraflagellar transport 172) - Rat Genome Database

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Gene: IFT172 (intraflagellar transport 172) Sus scrofa
Analyze
Symbol: IFT172
Name: intraflagellar transport 172
RGD ID: 14212021
Description: ENCODES a protein that exhibits transcription factor binding (ortholog); INVOLVED IN bone development (ortholog); brain development (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); atrioventricular septal defect (ortholog); FOUND IN intraciliary transport particle B (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport 172 homolog; intraflagellar transport protein 172 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,683,669 - 111,718,970 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,683,674 - 111,718,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,754,392 - 118,789,234 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IFT172
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,683,669 - 111,718,970 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,683,674 - 111,718,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,754,392 - 118,789,234 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFT172
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,444,377 - 27,489,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,444,377 - 27,489,805 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,667,244 - 27,712,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,520,744 - 27,566,075 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,578,891 - 27,624,222NCBI
Celera227,513,414 - 27,558,746 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,409,128 - 27,454,460 (-)NCBIHuRef
CHM1_1227,597,152 - 27,642,482 (-)NCBICHM1_1
T2T-CHM13v2.0227,486,730 - 27,532,099 (-)NCBIT2T-CHM13v2.0
Ift172
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,410,623 - 31,448,458 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,410,621 - 31,448,460 (-)EnsemblGRCm39 Ensembl
GRCm38531,253,279 - 31,291,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,253,277 - 31,291,116 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,555,652 - 31,593,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,529,860 - 31,567,695 (-)NCBIMGSCv36mm8
Celera528,732,431 - 28,770,403 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Ift172
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,801,841 - 30,841,239 (+)NCBIGRCr8
mRatBN7.2625,081,933 - 25,121,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,081,980 - 25,120,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,382,814 - 25,422,109 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,698,704 - 25,738,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,178,064 - 25,217,359 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,390,686 - 26,485,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0636,210,777 - 36,304,662 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera624,573,352 - 24,613,367 (+)NCBICelera
Cytogenetic Map6q14NCBI
Ift172
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,418,609 - 9,455,026 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,418,599 - 9,455,026 (-)NCBIChiLan1.0ChiLan1.0
IFT172
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,022,173 - 99,066,368 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,026,177 - 99,070,336 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,448,139 - 27,492,302 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,536,534 - 27,580,406 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,536,534 - 27,580,406 (-)Ensemblpanpan1.1panPan2
IFT172
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,389,462 - 21,426,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,389,482 - 21,426,796 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,281,228 - 21,318,724 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,710,828 - 21,748,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,710,832 - 21,748,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,397,430 - 21,434,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,406,908 - 21,444,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,455,165 - 21,492,664 (-)NCBIUU_Cfam_GSD_1.0
Ift172
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,694,405 - 65,731,092 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,108,437 - 5,145,160 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,108,437 - 5,145,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT172
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,130,436 - 80,171,259 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604531,982,836 - 32,026,287 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ift172
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,510,512 - 9,545,933 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,510,452 - 9,546,985 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IFT172
1244 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3 2 2
Low 10 4 5 2 20 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028161   ⟹   ENSSSCP00000025952
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,683,710 - 111,718,970 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000086891   ⟹   ENSSSCP00000072571
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,683,669 - 111,697,838 (+)Ensembl
RefSeq Acc Id: XM_003354889   ⟹   XP_003354937
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,683,674 - 111,718,504 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003354937   ⟸   XM_003354889
- UniProtKB: A0A8D1MVR0 (UniProtKB/TrEMBL),   A0A8D0WSZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025952   ⟸   ENSSSCT00000028161
RefSeq Acc Id: ENSSSCP00000072571   ⟸   ENSSSCT00000086891


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026367 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043909 UniProtKB/TrEMBL
  ENSSSCG00015067999 UniProtKB/TrEMBL
  ENSSSCG00025074182 UniProtKB/TrEMBL
  ENSSSCG00030040587 UniProtKB/TrEMBL
  ENSSSCG00035077552 UniProtKB/TrEMBL
  ENSSSCG00040067993 UniProtKB/TrEMBL
  ENSSSCG00050052293 UniProtKB/TrEMBL
  ENSSSCG00055004510 UniProtKB/TrEMBL
  ENSSSCG00060068983 UniProtKB/TrEMBL
  ENSSSCG00065007156 UniProtKB/TrEMBL
  ENSSSCG00070010371 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028161 ENTREZGENE
  ENSSSCT00000028161.4 UniProtKB/TrEMBL
  ENSSSCT00000086891.1 UniProtKB/TrEMBL
  ENSSSCT00005070577.1 UniProtKB/TrEMBL
  ENSSSCT00015091202.1 UniProtKB/TrEMBL
  ENSSSCT00015091953.1 UniProtKB/TrEMBL
  ENSSSCT00025102198.1 UniProtKB/TrEMBL
  ENSSSCT00025102658.1 UniProtKB/TrEMBL
  ENSSSCT00030056461.1 UniProtKB/TrEMBL
  ENSSSCT00030056596.1 UniProtKB/TrEMBL
  ENSSSCT00035105711.1 UniProtKB/TrEMBL
  ENSSSCT00035105969.1 UniProtKB/TrEMBL
  ENSSSCT00040093065.1 UniProtKB/TrEMBL
  ENSSSCT00040093323.1 UniProtKB/TrEMBL
  ENSSSCT00050071227.1 UniProtKB/TrEMBL
  ENSSSCT00050071240.1 UniProtKB/TrEMBL
  ENSSSCT00055008941.1 UniProtKB/TrEMBL
  ENSSSCT00060094496.1 UniProtKB/TrEMBL
  ENSSSCT00065009601.1 UniProtKB/TrEMBL
  ENSSSCT00070020256.1 UniProtKB/TrEMBL
  ENSSSCT00070020269.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100625100 UniProtKB/TrEMBL
NCBI Gene IFT172 ENTREZGENE
PANTHER IFT140/172-RELATED UniProtKB/TrEMBL
  INTRAFLAGELLAR TRANSPORT PROTEIN 172 HOMOLOG UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  Tricorn protease domain 2 UniProtKB/TrEMBL
UniProt A0A4X1TL46_PIG UniProtKB/TrEMBL
  A0A4X1TNU7_PIG UniProtKB/TrEMBL
  A0A5G2R5Q2_PIG UniProtKB/TrEMBL
  A0A8D0WRP1_PIG UniProtKB/TrEMBL
  A0A8D0WSZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BJM1_PIG UniProtKB/TrEMBL
  A0A8D1D5T0_PIG UniProtKB/TrEMBL
  A0A8D1FNF1_PIG UniProtKB/TrEMBL
  A0A8D1MVR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PPW4_PIG UniProtKB/TrEMBL
  I3LPC6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89046 ENTREZGENE