AGGF1 (angiogenic factor with G-patch and FHA domains 1) - Rat Genome Database

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Gene: AGGF1 (angiogenic factor with G-patch and FHA domains 1) Sus scrofa
Analyze
Symbol: AGGF1
Name: angiogenic factor with G-patch and FHA domains 1
RGD ID: 14206391
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell adhesion (inferred); positive regulation of angiogenesis (inferred); positive regulation of endothelial cell proliferation (inferred); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog); syndactyly (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: angiogenic factor with G patch and FHA domains 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,890,481 - 85,934,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,890,423 - 85,941,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,506,911 - 87,552,643 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
AGGF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,890,481 - 85,934,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,890,423 - 85,941,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,506,911 - 87,552,643 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGGF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,030,404 - 77,065,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,029,251 - 77,065,234 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,326,229 - 76,361,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,361,988 - 76,396,794 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,361,987 - 76,396,791NCBI
Celera572,220,718 - 72,255,361 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,532,859 - 71,567,837 (+)NCBIHuRef
CHM1_1575,759,108 - 75,794,521 (+)NCBICHM1_1
T2T-CHM13v2.0577,512,128 - 77,546,904 (+)NCBIT2T-CHM13v2.0
Aggf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,487,191 - 95,511,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,487,191 - 95,511,860 (-)EnsemblGRCm39 Ensembl
GRCm381395,350,683 - 95,375,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,350,683 - 95,375,352 (-)EnsemblGRCm38mm10GRCm38
MGSCv371396,120,671 - 96,145,289 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,451,415 - 96,476,033 (-)NCBIMGSCv36mm8
Celera1398,972,068 - 98,996,687 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.41NCBI
Aggf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,354,073 - 28,380,794 (-)NCBIGRCr8
mRatBN7.2226,619,336 - 26,646,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,619,339 - 26,645,952 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0225,068,804 - 25,095,429 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,069,620 - 25,095,106 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,227,286 - 44,253,899 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,723,668 - 25,749,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,644,037 - 25,679,865 (-)NCBI
Celera222,684,509 - 22,711,225 (-)NCBICelera
Cytogenetic Map2q12NCBI
Aggf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542523,847,673 - 23,874,404 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542523,847,502 - 23,873,964 (-)NCBIChiLan1.0ChiLan1.0
AGGF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,232,858 - 38,265,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,386,503 - 36,418,418 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,236,209 - 38,268,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,762,317 - 38,794,606 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,762,317 - 38,794,594 (-)Ensemblpanpan1.1panPan2
AGGF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,578,050 - 29,682,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl329,647,592 - 29,682,776 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha330,804,004 - 30,921,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,486,014 - 29,601,272 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl329,566,220 - 29,601,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1329,420,293 - 29,538,033 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,400,940 - 29,518,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,770,262 - 29,888,021 (-)NCBIUU_Cfam_GSD_1.0
Aggf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213185,749,025 - 185,789,458 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365495,068,656 - 5,111,406 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365495,069,164 - 5,109,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGGF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1471,277,293 - 71,309,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl471,277,315 - 71,310,159 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604920,115,923 - 20,148,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aggf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,538,833 - 1,580,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,538,603 - 1,577,119 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AGGF1
1527 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000015395   ⟹   ENSSSCP00000014986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl285,890,481 - 85,934,358 (+)Ensembl
RefSeq Acc Id: XM_003123715   ⟹   XP_003123763
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1285,890,423 - 85,941,314 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003123763   ⟸   XM_003123715
- UniProtKB: A0A4X1SXN2 (UniProtKB/TrEMBL),   A0A480YTT3 (UniProtKB/TrEMBL),   A0A8D1LQ86 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000014986   ⟸   ENSSSCT00000015395
Protein Domains
FHA   G-patch


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014094 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021028 UniProtKB/TrEMBL
  ENSSSCG00015074351 UniProtKB/TrEMBL
  ENSSSCG00025012626 UniProtKB/TrEMBL
  ENSSSCG00030051140 UniProtKB/TrEMBL
  ENSSSCG00035037777 UniProtKB/TrEMBL
  ENSSSCG00045000265 UniProtKB/TrEMBL
  ENSSSCG00050021388 UniProtKB/TrEMBL
  ENSSSCG00055004726 UniProtKB/TrEMBL
  ENSSSCG00060005033 UniProtKB/TrEMBL
  ENSSSCG00070004536 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015395 ENTREZGENE
  ENSSSCT00000015395.5 UniProtKB/TrEMBL
  ENSSSCT00005033496.1 UniProtKB/TrEMBL
  ENSSSCT00015100113.1 UniProtKB/TrEMBL
  ENSSSCT00025016749.1 UniProtKB/TrEMBL
  ENSSSCT00030071266.1 UniProtKB/TrEMBL
  ENSSSCT00035050085.1 UniProtKB/TrEMBL
  ENSSSCT00045000335.1 UniProtKB/TrEMBL
  ENSSSCT00050028842.1 UniProtKB/TrEMBL
  ENSSSCT00055009336.1 UniProtKB/TrEMBL
  ENSSSCT00060006280.1 UniProtKB/TrEMBL
  ENSSSCT00070008586.1 UniProtKB/TrEMBL
  ENSSSCT00070008589.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro AGGF1 UniProtKB/TrEMBL
  AGGF1_OCRE UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100520064 UniProtKB/TrEMBL
NCBI Gene AGGF1 ENTREZGENE
PANTHER ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
  ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
  G_patch UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A480YTT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J8U5_PIG UniProtKB/TrEMBL
  A0A8D1G9P4_PIG UniProtKB/TrEMBL
  A0A8D1LQ86 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1S2H1 UniProtKB/TrEMBL
VGNC ID VGNC:96789 ENTREZGENE