SYBU (syntabulin) - Rat Genome Database

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Gene: SYBU (syntabulin) Sus scrofa
Analyze
Symbol: SYBU
Name: syntabulin
RGD ID: 14190827
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN anterograde neuronal dense core vesicle transport (ortholog); axonal transport of mitochondrion (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN dense body (ortholog); microtubule (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SYBU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYBU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,573,978 - 109,691,791 (-)EnsemblGRCh38hg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBINCBI36Build 36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBICelera
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
T2T-CHM13v2.08110,702,563 - 110,820,184 (-)NCBIT2T-CHM13v2.0
Sybu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,535,252 - 44,651,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,535,252 - 44,651,459 (-)EnsemblGRCm39 Ensembl
GRCm381544,671,856 - 44,788,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,671,856 - 44,788,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv371544,503,402 - 44,619,609 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361544,501,930 - 44,618,137 (-)NCBIMGSCv36mm8
Celera1545,123,907 - 45,239,526 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Sybu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,731,662 - 77,833,413 (-)NCBIGRCr8
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
Sybu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,971,394 - 17,036,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,971,394 - 17,036,925 (-)NCBIChiLan1.0ChiLan1.0
SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,368,117 - 108,436,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)Ensemblpanpan1.1panPan2
SYBU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,110,183 - 10,179,514 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,111,091 - 10,180,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1310,100,830 - 10,209,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01310,391,898 - 10,465,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,391,905 - 10,501,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11310,133,302 - 10,242,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,250,505 - 10,324,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,340,031 - 10,448,908 (-)NCBIUU_Cfam_GSD_1.0
Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530327,906,164 - 28,012,831 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,332,452 - 35,438,204 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,332,243 - 35,439,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYBU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,274,092 - 104,390,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,273,217 - 104,344,348 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603936,184,560 - 36,300,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sybu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,657,285 - 8,766,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247638,657,276 - 8,742,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYBU
2305 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 4 13 11 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000006610   ⟹   ENSSSCP00000006434
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)Ensembl
RefSeq Acc Id: XM_021089009   ⟹   XP_020944668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020944668 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000006434
  ENSSSCP00000006434.3
RefSeq Acc Id: XP_020944668   ⟸   XM_021089009
- UniProtKB: A0A480QXL2 (UniProtKB/TrEMBL),   A0A8D0IWK7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000006434   ⟸   ENSSSCT00000006610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006610 ENTREZGENE
  ENSSSCT00000006610.4 UniProtKB/TrEMBL
InterPro Syntaphilin/Syntabulin UniProtKB/TrEMBL
NCBI Gene SYBU ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN UniProtKB/TrEMBL
  PTHR16208:SF4 UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/TrEMBL
UniProt A0A480QXL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IWK7 ENTREZGENE
  F1S1I1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8D0IWK7 UniProtKB/TrEMBL
VGNC ID VGNC:93649 ENTREZGENE