SYBU (syntabulin) - Rat Genome Database

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Gene: SYBU (syntabulin) Homo sapiens
Analyze
Symbol: SYBU
Name: syntabulin
RGD ID: 1604347
HGNC Page HGNC
Description: Predicted to have microtubule binding activity. Predicted to be involved in axonal transport of mitochondrion; regulation of insulin secretion involved in cellular response to glucose stimulus; and synapse maturation. Localizes to intracellular membrane-bounded organelle. Colocalizes with microtubule and vesicle.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: FLJ20366; Golgi-localized protein; golgi-localized syntaphilin-related protein; GOLSYN; GOLSYN A protein; GOLSYN B protein; GOLSYN C protein; implicated in syntaxin trafficking in neurons; KIAA1472; microtubule-associated protein; OCSYN; SNPHL; syntabulin (syntaxin-interacting); syntaphilin-like; syntaxin-1-binding protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8109,573,978 - 109,691,791 (-)EnsemblGRCh38hg38GRCh38
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBINCBI36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBI
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10819331   PMID:12107410   PMID:12477932   PMID:14702039   PMID:15459722   PMID:15656992   PMID:16157705   PMID:16169070   PMID:16344560   PMID:16713569   PMID:16750881  
PMID:17043677   PMID:17611281   PMID:20379614   PMID:21873635   PMID:22975310   PMID:25515538   PMID:26186194   PMID:26496610   PMID:26868290   PMID:28514442   PMID:29117863   PMID:29162697  
PMID:32296183   PMID:32877691  


Genomics

Comparative Map Data
SYBU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8109,573,978 - 109,691,791 (-)EnsemblGRCh38hg38GRCh38
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBINCBI36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBI
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
Sybu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,535,252 - 44,651,466 (-)NCBIGRCm39mm39
GRCm39 Ensembl1544,535,252 - 44,651,459 (-)Ensembl
GRCm381544,671,856 - 44,788,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,671,856 - 44,788,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv371544,503,402 - 44,619,609 (-)NCBIGRCm37mm9NCBIm37
MGSCv361544,501,930 - 44,618,137 (-)NCBImm8
Celera1545,123,907 - 45,239,526 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
Sybu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2775,847,000 - 75,948,919 (-)NCBI
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC3.4rn4RGSC3.4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
Sybu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,971,394 - 17,036,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,971,394 - 17,036,925 (-)NCBIChiLan1.0ChiLan1.0
SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18108,368,117 - 108,436,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0panPan3
SYBU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,110,183 - 10,179,514 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,111,091 - 10,180,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1310,100,830 - 10,209,568 (-)NCBI
ROS_Cfam_1.01310,391,898 - 10,465,693 (-)NCBI
UMICH_Zoey_3.11310,133,302 - 10,242,126 (-)NCBI
UNSW_CanFamBas_1.01310,250,505 - 10,324,527 (-)NCBI
UU_Cfam_GSD_1.01310,340,031 - 10,448,908 (-)NCBI
Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530327,906,164 - 28,012,831 (+)NCBI
SpeTri2.0NW_00493647035,332,243 - 35,439,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYBU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,899,969 - 27,974,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYBU
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,274,092 - 104,390,051 (-)NCBI
ChlSab1.1 Ensembl8104,273,217 - 104,344,348 (-)Ensembl
Sybu
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247638,657,276 - 8,742,161 (-)NCBI

Position Markers
SHGC-24304  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,586,470 - 110,586,559UniSTSGRCh37
Build 368110,655,646 - 110,655,735RGDNCBI36
Celera8106,773,866 - 106,773,955RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,908,452 - 105,908,541UniSTS
D8S1430E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,652,720 - 110,652,903UniSTSGRCh37
Build 368110,721,896 - 110,722,079RGDNCBI36
Celera8106,840,110 - 106,840,293RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,974,692 - 105,974,875UniSTS
SHGC-149074  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,663,738 - 110,664,033UniSTSGRCh37
Build 368110,732,914 - 110,733,209RGDNCBI36
Celera8106,851,129 - 106,851,424RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,985,710 - 105,986,005UniSTS
TNG Radiation Hybrid Map856736.0UniSTS
SHGC-149185  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,701,221 - 110,701,510UniSTSGRCh37
Build 368110,770,397 - 110,770,686RGDNCBI36
Celera8106,888,640 - 106,888,929RGD
Cytogenetic Map8q23.2UniSTS
TNG Radiation Hybrid Map856708.0UniSTS
SHGC-172485  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,620,617 - 110,620,947UniSTSGRCh37
Build 368110,689,793 - 110,690,123RGDNCBI36
Celera8106,808,013 - 106,808,343RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,942,601 - 105,942,931UniSTS
TNG Radiation Hybrid Map856764.0UniSTS
D8S1594  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,586,452 - 110,586,651UniSTSGRCh37
Build 368110,655,628 - 110,655,827RGDNCBI36
Celera8106,773,848 - 106,774,047RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,908,434 - 105,908,633UniSTS
GeneMap99-GB4 RH Map8447.37UniSTS
Whitehead-RH Map8592.3UniSTS
Whitehead-YAC Contig Map8 UniSTS
BCD1229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,678,325 - 110,678,398UniSTSGRCh37
Build 368110,747,501 - 110,747,574RGDNCBI36
Celera8106,865,720 - 106,865,793RGD
Cytogenetic Map8q23.2UniSTS
HuRef8106,000,212 - 106,000,285UniSTS
GeneMap99-GB4 RH Map8437.68UniSTS
NCBI RH Map81001.7UniSTS
D8S423  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,593,574 - 110,593,881UniSTSGRCh37
Build 368110,662,750 - 110,663,057RGDNCBI36
Celera8106,780,970 - 106,781,277RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,915,557 - 105,915,864UniSTS
A006R45  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,652,688 - 110,652,836UniSTSGRCh37
Build 368110,721,864 - 110,722,012RGDNCBI36
Celera8106,840,078 - 106,840,226RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,974,660 - 105,974,808UniSTS
GeneMap99-GB4 RH Map8448.97UniSTS
A004G12  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,651,432 - 110,651,647UniSTSGRCh37
Build 368110,720,608 - 110,720,823RGDNCBI36
Celera8106,838,822 - 106,839,037RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,973,404 - 105,973,619UniSTS
GeneMap99-GB4 RH Map8447.85UniSTS
A004W27  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,586,530 - 110,586,677UniSTSGRCh37
Build 368110,655,706 - 110,655,853RGDNCBI36
Celera8106,773,926 - 106,774,073RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,908,512 - 105,908,659UniSTS
GeneMap99-GB4 RH Map8447.48UniSTS
Whitehead-RH Map8592.3UniSTS
RH18239  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378110,586,530 - 110,586,671UniSTSGRCh37
Build 368110,655,706 - 110,655,847RGDNCBI36
Celera8106,773,926 - 106,774,067RGD
Cytogenetic Map8q23.2UniSTS
HuRef8105,908,512 - 105,908,653UniSTS
GeneMap99-GB4 RH Map8447.69UniSTS
NCBI RH Map81243.0UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8780
Count of miRNA genes:1074
Interacting mature miRNAs:1331
Transcripts:ENST00000276646, ENST00000399066, ENST00000408889, ENST00000408908, ENST00000419099, ENST00000422135, ENST00000424158, ENST00000433638, ENST00000440310, ENST00000446070, ENST00000524720, ENST00000526302, ENST00000526736, ENST00000527600, ENST00000527664, ENST00000527707, ENST00000528045, ENST00000528331, ENST00000528569, ENST00000528647, ENST00000528716, ENST00000528735, ENST00000529175, ENST00000529190, ENST00000529690, ENST00000530841, ENST00000531230, ENST00000531284, ENST00000532189, ENST00000532594, ENST00000532779, ENST00000533065, ENST00000533171, ENST00000533394, ENST00000533821, ENST00000533895, ENST00000534184, ENST00000534501, ENST00000534578
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 1346 623 1239 369 75 243 1773 552 3121 37 289 741 128 955 1146
Low 1074 1565 469 246 876 214 2311 1543 588 337 1130 841 44 1 249 1606 4
Below cutoff 10 775 12 5 912 5 252 91 20 43 25 20 1 36

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001099743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011517154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA255630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB040905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB195676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB195677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB195678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB195679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY705385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG702715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU607867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA395128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA155137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA309225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA530258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA773983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA787454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA803330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB127917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB155885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC350594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC351469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN993094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000276646   ⟹   ENSP00000276646
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,573,978 - 109,644,822 (-)Ensembl
RefSeq Acc Id: ENST00000399066   ⟹   ENSP00000382019
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,182 - 109,643,675 (-)Ensembl
RefSeq Acc Id: ENST00000408889   ⟹   ENSP00000386196
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,188 - 109,681,005 (-)Ensembl
RefSeq Acc Id: ENST00000408908   ⟹   ENSP00000386154
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,188 - 109,648,903 (-)Ensembl
RefSeq Acc Id: ENST00000422135   ⟹   ENSP00000407118
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,188 - 109,691,791 (-)Ensembl
RefSeq Acc Id: ENST00000424158   ⟹   ENSP00000415654
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,176 - 109,648,779 (-)Ensembl
RefSeq Acc Id: ENST00000433638   ⟹   ENSP00000403544
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,188 - 109,648,903 (-)Ensembl
RefSeq Acc Id: ENST00000440310   ⟹   ENSP00000404369
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,188 - 109,645,593 (-)Ensembl
RefSeq Acc Id: ENST00000446070   ⟹   ENSP00000414748
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,182 - 109,648,836 (-)Ensembl
RefSeq Acc Id: ENST00000524720   ⟹   ENSP00000435224
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,618,857 - 109,648,966 (-)Ensembl
RefSeq Acc Id: ENST00000526302   ⟹   ENSP00000434061
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,642,728 - 109,648,862 (-)Ensembl
RefSeq Acc Id: ENST00000526736
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,585,722 - 109,607,999 (-)Ensembl
RefSeq Acc Id: ENST00000527600   ⟹   ENSP00000434612
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,642,736 - 109,680,828 (-)Ensembl
RefSeq Acc Id: ENST00000527664
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,809 - 109,680,874 (-)Ensembl
RefSeq Acc Id: ENST00000527707
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,575,975 - 109,581,058 (-)Ensembl
RefSeq Acc Id: ENST00000528045   ⟹   ENSP00000436797
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,799 - 109,648,746 (-)Ensembl
RefSeq Acc Id: ENST00000528331   ⟹   ENSP00000436041
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,182 - 109,648,836 (-)Ensembl
RefSeq Acc Id: ENST00000528569   ⟹   ENSP00000434074
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,936 - 109,643,426 (-)Ensembl
RefSeq Acc Id: ENST00000528647   ⟹   ENSP00000432501
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,186 - 109,645,517 (-)Ensembl
RefSeq Acc Id: ENST00000528716   ⟹   ENSP00000436520
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,618,984 - 109,680,812 (-)Ensembl
RefSeq Acc Id: ENST00000528735
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,912 - 109,586,529 (-)Ensembl
RefSeq Acc Id: ENST00000529175   ⟹   ENSP00000434871
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,186 - 109,580,537 (-)Ensembl
RefSeq Acc Id: ENST00000529190   ⟹   ENSP00000432835
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,918 - 109,691,789 (-)Ensembl
RefSeq Acc Id: ENST00000529690   ⟹   ENSP00000433941
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,653 - 109,608,075 (-)Ensembl
RefSeq Acc Id: ENST00000530841   ⟹   ENSP00000435433
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,586,127 - 109,645,518 (-)Ensembl
RefSeq Acc Id: ENST00000531230   ⟹   ENSP00000434158
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,586,130 - 109,680,914 (-)Ensembl
RefSeq Acc Id: ENST00000531284
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,618,811 - 109,644,779 (-)Ensembl
RefSeq Acc Id: ENST00000532189   ⟹   ENSP00000436908
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,579,936 - 109,680,915 (-)Ensembl
RefSeq Acc Id: ENST00000532594   ⟹   ENSP00000436850
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,577,896 - 109,608,000 (-)Ensembl
RefSeq Acc Id: ENST00000532779   ⟹   ENSP00000436266
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,176 - 109,691,604 (-)Ensembl
RefSeq Acc Id: ENST00000533065   ⟹   ENSP00000432962
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,206 - 109,644,817 (-)Ensembl
RefSeq Acc Id: ENST00000533171   ⟹   ENSP00000434679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,574,752 - 109,681,005 (-)Ensembl
RefSeq Acc Id: ENST00000533394   ⟹   ENSP00000431492
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,575,975 - 109,603,454 (-)Ensembl
RefSeq Acc Id: ENST00000533821   ⟹   ENSP00000431469
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,586,099 - 109,680,219 (-)Ensembl
RefSeq Acc Id: ENST00000533895   ⟹   ENSP00000433446
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,573,978 - 109,648,836 (-)Ensembl
RefSeq Acc Id: ENST00000534184   ⟹   ENSP00000432291
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,618,955 - 109,680,924 (-)Ensembl
RefSeq Acc Id: ENST00000534501   ⟹   ENSP00000434840
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,586,135 - 109,645,389 (-)Ensembl
RefSeq Acc Id: ENST00000534578   ⟹   ENSP00000431895
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8109,642,728 - 109,691,605 (-)Ensembl
RefSeq Acc Id: NM_001099743   ⟹   NP_001093213
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,691,600 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,773,196 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,744,269 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099744   ⟹   NP_001093214
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,691,600 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,773,196 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,744,269 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099745   ⟹   NP_001093215
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,680,966 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,762,410 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,733,483 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099746   ⟹   NP_001093216
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,680,966 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,762,410 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,733,483 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099747   ⟹   NP_001093217
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,648,802 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,730,308 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,701,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099748   ⟹   NP_001093218
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,648,802 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,730,308 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,701,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099749   ⟹   NP_001093219
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,648,802 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,730,308 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,701,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099750   ⟹   NP_001093220
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,648,802 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,730,308 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,701,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099751   ⟹   NP_001093221
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,645,593 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,726,998 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,698,070 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099752   ⟹   NP_001093222
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,645,593 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,726,998 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,698,070 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099753   ⟹   NP_001093223
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,644,822 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,726,227 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,697,299 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099754   ⟹   NP_001093224
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,644,822 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,726,227 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,697,299 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099755   ⟹   NP_001093225
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,644,822 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,726,227 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,697,299 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099756   ⟹   NP_001093226
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,574,176 - 109,643,190 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,724,595 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,695,667 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001330596   ⟹   NP_001317525
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,608,062 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001363032   ⟹   NP_001349961
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,603,459 (-)NCBI
RefSeq Acc Id: NM_017786   ⟹   NP_060256
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,573,978 - 109,648,802 (-)NCBI
GRCh378110,586,405 - 110,704,020 (-)RGD
Build 368110,655,581 - 110,730,308 (-)NCBI Archive
Celera8106,773,801 - 106,891,437 (-)RGD
HuRef8105,908,387 - 106,025,974 (-)RGD
CHM1_18110,626,649 - 110,701,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011517154   ⟹   XP_011515456
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,574,176 - 109,583,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013614   ⟹   XP_016869103
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,574,176 - 109,645,518 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013615   ⟹   XP_016869104
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,574,176 - 109,680,914 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001093213 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093214 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093215 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093216 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093217 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093218 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093219 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093220 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093221 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093222 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093223 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093224 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093225 (Get FASTA)   NCBI Sequence Viewer  
  NP_001093226 (Get FASTA)   NCBI Sequence Viewer  
  NP_001317525 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349961 (Get FASTA)   NCBI Sequence Viewer  
  NP_060256 (Get FASTA)   NCBI Sequence Viewer  
  XP_011515456 (Get FASTA)   NCBI Sequence Viewer  
  XP_016869103 (Get FASTA)   NCBI Sequence Viewer  
  XP_016869104 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH12082 (Get FASTA)   NCBI Sequence Viewer  
  AAU93914 (Get FASTA)   NCBI Sequence Viewer  
  BAA91121 (Get FASTA)   NCBI Sequence Viewer  
  BAA95996 (Get FASTA)   NCBI Sequence Viewer  
  BAD72976 (Get FASTA)   NCBI Sequence Viewer  
  BAD72977 (Get FASTA)   NCBI Sequence Viewer  
  BAD72978 (Get FASTA)   NCBI Sequence Viewer  
  BAD72979 (Get FASTA)   NCBI Sequence Viewer  
  BAF83158 (Get FASTA)   NCBI Sequence Viewer  
  BAG52185 (Get FASTA)   NCBI Sequence Viewer  
  BAG52343 (Get FASTA)   NCBI Sequence Viewer  
  BAG53323 (Get FASTA)   NCBI Sequence Viewer  
  BAH12518 (Get FASTA)   NCBI Sequence Viewer  
  CAD28457 (Get FASTA)   NCBI Sequence Viewer  
  CAD39068 (Get FASTA)   NCBI Sequence Viewer  
  EAW91935 (Get FASTA)   NCBI Sequence Viewer  
  EAW91936 (Get FASTA)   NCBI Sequence Viewer  
  EAW91937 (Get FASTA)   NCBI Sequence Viewer  
  Q9NX95 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001093213   ⟸   NM_001099743
- Peptide Label: isoform b
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093214   ⟸   NM_001099744
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093215   ⟸   NM_001099745
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093216   ⟸   NM_001099746
- Peptide Label: isoform d
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_060256   ⟸   NM_017786
- Peptide Label: isoform b
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093217   ⟸   NM_001099747
- Peptide Label: isoform b
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093219   ⟸   NM_001099749
- Peptide Label: isoform d
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093218   ⟸   NM_001099748
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093220   ⟸   NM_001099750
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093222   ⟸   NM_001099752
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093221   ⟸   NM_001099751
- Peptide Label: isoform b
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093223   ⟸   NM_001099753
- Peptide Label: isoform b
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093224   ⟸   NM_001099754
- Peptide Label: isoform a
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093225   ⟸   NM_001099755
- Peptide Label: isoform d
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001093226   ⟸   NM_001099756
- Peptide Label: isoform c
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011515456   ⟸   XM_011517154
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016869104   ⟸   XM_017013615
- Peptide Label: isoform X1
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016869103   ⟸   XM_017013614
- Peptide Label: isoform X1
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001317525   ⟸   NM_001330596
- Peptide Label: isoform e
- UniProtKB: Q9NX95 (UniProtKB/Swiss-Prot),   B7Z4D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349961   ⟸   NM_001363032
- Peptide Label: isoform f
RefSeq Acc Id: ENSP00000415654   ⟸   ENST00000424158
RefSeq Acc Id: ENSP00000382019   ⟸   ENST00000399066
RefSeq Acc Id: ENSP00000435433   ⟸   ENST00000530841
RefSeq Acc Id: ENSP00000434158   ⟸   ENST00000531230
RefSeq Acc Id: ENSP00000436908   ⟸   ENST00000532189
RefSeq Acc Id: ENSP00000436266   ⟸   ENST00000532779
RefSeq Acc Id: ENSP00000436850   ⟸   ENST00000532594
RefSeq Acc Id: ENSP00000431492   ⟸   ENST00000533394
RefSeq Acc Id: ENSP00000434679   ⟸   ENST00000533171
RefSeq Acc Id: ENSP00000432962   ⟸   ENST00000533065
RefSeq Acc Id: ENSP00000404369   ⟸   ENST00000440310
RefSeq Acc Id: ENSP00000431469   ⟸   ENST00000533821
RefSeq Acc Id: ENSP00000433446   ⟸   ENST00000533895
RefSeq Acc Id: ENSP00000432291   ⟸   ENST00000534184
RefSeq Acc Id: ENSP00000431895   ⟸   ENST00000534578
RefSeq Acc Id: ENSP00000434840   ⟸   ENST00000534501
RefSeq Acc Id: ENSP00000435224   ⟸   ENST00000524720
RefSeq Acc Id: ENSP00000414748   ⟸   ENST00000446070
RefSeq Acc Id: ENSP00000386154   ⟸   ENST00000408908
RefSeq Acc Id: ENSP00000403544   ⟸   ENST00000433638
RefSeq Acc Id: ENSP00000386196   ⟸   ENST00000408889
RefSeq Acc Id: ENSP00000276646   ⟸   ENST00000276646
RefSeq Acc Id: ENSP00000434061   ⟸   ENST00000526302
RefSeq Acc Id: ENSP00000434612   ⟸   ENST00000527600
RefSeq Acc Id: ENSP00000436041   ⟸   ENST00000528331
RefSeq Acc Id: ENSP00000436797   ⟸   ENST00000528045
RefSeq Acc Id: ENSP00000436520   ⟸   ENST00000528716
RefSeq Acc Id: ENSP00000432501   ⟸   ENST00000528647
RefSeq Acc Id: ENSP00000434074   ⟸   ENST00000528569
RefSeq Acc Id: ENSP00000433941   ⟸   ENST00000529690
RefSeq Acc Id: ENSP00000434871   ⟸   ENST00000529175
RefSeq Acc Id: ENSP00000432835   ⟸   ENST00000529190
RefSeq Acc Id: ENSP00000407118   ⟸   ENST00000422135

Promoters
RGD ID:7214005
Promoter ID:EPDNEW_H12749
Type:initiation region
Name:SYBU_1
Description:syntabulin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12750  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,644,817 - 109,644,877EPDNEW
RGD ID:7214009
Promoter ID:EPDNEW_H12750
Type:initiation region
Name:SYBU_2
Description:syntabulin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12749  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388109,648,802 - 109,648,862EPDNEW
RGD ID:6806781
Promoter ID:HG_KWN:61926
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:NM_001099756
Position:
Human AssemblyChrPosition (strand)Source
Build 368110,723,956 - 110,724,456 (-)MPROMDB
RGD ID:6806783
Promoter ID:HG_KWN:61928
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_001099751,   NM_001099752,   NM_001099753,   NM_001099754,   NM_001099755
Position:
Human AssemblyChrPosition (strand)Source
Build 368110,726,121 - 110,726,682 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q23.1-23.2(chr8:107356178-110913494)x3 copy number gain See cases [RCV000052185] Chr8:107356178..110913494 [GRCh38]
Chr8:108368406..111925723 [GRCh37]
Chr8:108437582..111994899 [NCBI36]
Chr8:8q23.1-23.2
uncertain significance
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:100867343-145070385)x3 copy number gain See cases [RCV000141694] Chr8:100867343..145070385 [GRCh38]
Chr8:101879571..146295771 [GRCh37]
Chr8:101948747..146266575 [NCBI36]
Chr8:8q22.3-24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8q23.1-23.2(chr8:108988194-109697085)x3 copy number gain See cases [RCV000142133] Chr8:108988194..109697085 [GRCh38]
Chr8:110000423..110709314 [GRCh37]
Chr8:110069599..110778490 [NCBI36]
Chr8:8q23.1-23.2
likely benign|uncertain significance
GRCh38/hg38 8q22.3-24.3(chr8:103306336-145068712)x3 copy number gain See cases [RCV000142810] Chr8:103306336..145068712 [GRCh38]
Chr8:104318564..146294098 [GRCh37]
Chr8:104387740..146264902 [NCBI36]
Chr8:8q22.3-24.3
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q23.1-23.2(chr8:109214531-110868812)x3 copy number gain See cases [RCV000446663] Chr8:109214531..110868812 [GRCh37]
Chr8:8q23.1-23.2
uncertain significance
GRCh37/hg19 8q23.1-24.12(chr8:107032887-120742018)x1 copy number loss See cases [RCV000448650] Chr8:107032887..120742018 [GRCh37]
Chr8:8q23.1-24.12
pathogenic
GRCh37/hg19 8q22.1-24.3(chr8:98432250-146222672)x4 copy number gain See cases [RCV000448954] Chr8:98432250..146222672 [GRCh37]
Chr8:8q22.1-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.3-24.3(chr8:93047482-141355635)x3 copy number gain See cases [RCV000511761] Chr8:93047482..141355635 [GRCh37]
Chr8:8q21.3-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841154-146295771)x3 copy number gain See cases [RCV000511002] Chr8:86841154..146295771 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841228-142689874)x3 copy number gain See cases [RCV000510854] Chr8:86841228..142689874 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8q21.2-23.3(chr8:86841154-116518125)x3 copy number gain not provided [RCV000683045] Chr8:86841154..116518125 [GRCh37]
Chr8:8q21.2-23.3
pathogenic
GRCh37/hg19 8q23.1-24.13(chr8:110250943-123515785)x1 copy number loss not provided [RCV000683038] Chr8:110250943..123515785 [GRCh37]
Chr8:8q23.1-24.13
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_001099754.2(SYBU):c.1158C>T (p.Asp386=) single nucleotide variant not provided [RCV000973026] Chr8:109575740 [GRCh38]
Chr8:110587969 [GRCh37]
Chr8:8q23.2
benign
NM_001099754.2(SYBU):c.611T>C (p.Leu204Pro) single nucleotide variant not provided [RCV000973027] Chr8:109579922 [GRCh38]
Chr8:110592151 [GRCh37]
Chr8:8q23.2
benign
NM_001099754.2(SYBU):c.246T>C (p.Pro82=) single nucleotide variant not provided [RCV000892917] Chr8:109619023 [GRCh38]
Chr8:110631252 [GRCh37]
Chr8:8q23.2
benign
GRCh37/hg19 8q23.2(chr8:110604492-110919043)x3 copy number gain not provided [RCV001006130] Chr8:110604492..110919043 [GRCh37]
Chr8:8q23.2
uncertain significance
GRCh37/hg19 8q22.3-23.3(chr8:104437051-114170843)x1 copy number loss not provided [RCV000847013] Chr8:104437051..114170843 [GRCh37]
Chr8:8q22.3-23.3
uncertain significance
GRCh37/hg19 8q23.1-24.13(chr8:108421573-123429638)x3 copy number gain not provided [RCV001259025] Chr8:108421573..123429638 [GRCh37]
Chr8:8q23.1-24.13
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26011 AgrOrtholog
COSMIC SYBU COSMIC
Ensembl Genes ENSG00000147642 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000276646 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000382019 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000386154 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000386196 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000403544 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000404369 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000407118 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000414748 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000415654 UniProtKB/TrEMBL
  ENSP00000431469 UniProtKB/TrEMBL
  ENSP00000431492 UniProtKB/TrEMBL
  ENSP00000431895 UniProtKB/TrEMBL
  ENSP00000432291 UniProtKB/TrEMBL
  ENSP00000432501 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000432835 UniProtKB/TrEMBL
  ENSP00000432962 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000433446 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000433941 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000434061 UniProtKB/TrEMBL
  ENSP00000434074 UniProtKB/TrEMBL
  ENSP00000434158 UniProtKB/TrEMBL
  ENSP00000434612 UniProtKB/TrEMBL
  ENSP00000434679 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000434840 UniProtKB/TrEMBL
  ENSP00000434871 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000435224 UniProtKB/TrEMBL
  ENSP00000435433 UniProtKB/TrEMBL
  ENSP00000436041 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000436266 UniProtKB/Swiss-Prot
  ENSP00000436520 UniProtKB/TrEMBL
  ENSP00000436797 UniProtKB/TrEMBL
  ENSP00000436850 UniProtKB/TrEMBL
  ENSP00000436908 UniProtKB/TrEMBL
Ensembl Transcript ENST00000276646 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000399066 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000408889 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000408908 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000422135 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000424158 UniProtKB/TrEMBL
  ENST00000433638 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000440310 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000446070 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000524720 UniProtKB/TrEMBL
  ENST00000526302 UniProtKB/TrEMBL
  ENST00000527600 UniProtKB/TrEMBL
  ENST00000528045 UniProtKB/TrEMBL
  ENST00000528331 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000528569 UniProtKB/TrEMBL
  ENST00000528647 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000528716 UniProtKB/TrEMBL
  ENST00000529175 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000529190 UniProtKB/TrEMBL
  ENST00000529690 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000530841 UniProtKB/TrEMBL
  ENST00000531230 UniProtKB/TrEMBL
  ENST00000532189 UniProtKB/TrEMBL
  ENST00000532594 UniProtKB/TrEMBL
  ENST00000532779 UniProtKB/Swiss-Prot
  ENST00000533065 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000533171 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000533394 UniProtKB/TrEMBL
  ENST00000533821 UniProtKB/TrEMBL
  ENST00000533895 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000534184 UniProtKB/TrEMBL
  ENST00000534501 UniProtKB/TrEMBL
  ENST00000534578 UniProtKB/TrEMBL
GTEx ENSG00000147642 GTEx
HGNC ID HGNC:26011 ENTREZGENE
Human Proteome Map SYBU Human Proteome Map
InterPro Syntabulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaphilin/Syntabulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55638 UniProtKB/Swiss-Prot
NCBI Gene 55638 ENTREZGENE
OMIM 611568 OMIM
PANTHER PTHR16208:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA165586000 PharmGKB
UniProt A0A0C4DG86_HUMAN UniProtKB/TrEMBL
  B3KRD1_HUMAN UniProtKB/TrEMBL
  B7Z4D2 ENTREZGENE, UniProtKB/TrEMBL
  E9PI48_HUMAN UniProtKB/TrEMBL
  E9PJ11_HUMAN UniProtKB/TrEMBL
  E9PK96_HUMAN UniProtKB/TrEMBL
  E9PL50_HUMAN UniProtKB/TrEMBL
  E9PL66_HUMAN UniProtKB/TrEMBL
  E9PLB9_HUMAN UniProtKB/TrEMBL
  E9PN31_HUMAN UniProtKB/TrEMBL
  E9PNN9_HUMAN UniProtKB/TrEMBL
  E9PPC2_HUMAN UniProtKB/TrEMBL
  E9PPS4_HUMAN UniProtKB/TrEMBL
  E9PQE2_HUMAN UniProtKB/TrEMBL
  E9PQG2_HUMAN UniProtKB/TrEMBL
  E9PRH8_HUMAN UniProtKB/TrEMBL
  E9PRT7_HUMAN UniProtKB/TrEMBL
  Q9NX95 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8K354 UniProtKB/Swiss-Prot
  B3KQX3 UniProtKB/Swiss-Prot
  B3KU61 UniProtKB/Swiss-Prot
  E9PRY4 UniProtKB/TrEMBL
  E9PSC5 UniProtKB/TrEMBL
  Q5R1T1 UniProtKB/Swiss-Prot
  Q5R1T2 UniProtKB/Swiss-Prot
  Q5R1T3 UniProtKB/Swiss-Prot
  Q5Y2M6 UniProtKB/Swiss-Prot
  Q8ND49 UniProtKB/Swiss-Prot
  Q8TCR6 UniProtKB/Swiss-Prot
  Q96D80 UniProtKB/Swiss-Prot
  Q9P256 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-05 SYBU  syntabulin  SYBU  syntabulin (syntaxin-interacting)  Symbol and/or name change 5135510 APPROVED
2011-07-27 SYBU  syntabulin (syntaxin-interacting)  GOLSYN  Golgi-localized protein  Symbol and/or name change 5135510 APPROVED