SYBU (syntabulin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SYBU (syntabulin) Pan paniscus
Analyze
Symbol: SYBU
Name: syntabulin
RGD ID: 11902908
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN anterograde neuronal dense core vesicle transport (ortholog); axonal transport of mitochondrion (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN dense body (ortholog); microtubule (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,368,117 - 108,436,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,368,117 - 108,436,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)Ensemblpanpan1.1panPan2
SYBU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,573,978 - 109,691,791 (-)EnsemblGRCh38hg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBINCBI36Build 36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBICelera
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
T2T-CHM13v2.08110,702,563 - 110,820,184 (-)NCBIT2T-CHM13v2.0
Sybu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,535,252 - 44,651,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,535,252 - 44,651,459 (-)EnsemblGRCm39 Ensembl
GRCm381544,671,856 - 44,788,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,671,856 - 44,788,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv371544,503,402 - 44,619,609 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361544,501,930 - 44,618,137 (-)NCBIMGSCv36mm8
Celera1545,123,907 - 45,239,526 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Sybu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,731,662 - 77,833,413 (-)NCBIGRCr8
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
Sybu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,971,394 - 17,036,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,971,394 - 17,036,925 (-)NCBIChiLan1.0ChiLan1.0
SYBU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,110,183 - 10,179,514 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,111,091 - 10,180,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1310,100,830 - 10,209,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01310,391,898 - 10,465,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,391,905 - 10,501,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11310,133,302 - 10,242,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,250,505 - 10,324,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,340,031 - 10,448,908 (-)NCBIUU_Cfam_GSD_1.0
Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530327,906,164 - 28,012,831 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,332,452 - 35,438,204 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,332,243 - 35,439,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYBU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYBU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,274,092 - 104,390,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,273,217 - 104,344,348 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603936,184,560 - 36,300,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sybu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,657,285 - 8,766,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247638,657,276 - 8,742,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008975231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057303074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057303075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000042433   ⟹   ENSPPAP00000019663
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8108,368,117 - 108,436,570 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000042437   ⟹   ENSPPAP00000019667
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8108,368,117 - 108,401,787 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000042452   ⟹   ENSPPAP00000019682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8108,368,844 - 108,483,927 (-)Ensembl
RefSeq Acc Id: XM_008975231   ⟹   XP_008973479
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 126,982,680 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,503,655 (-)NCBI
Mhudiblu_PPA_v08106,223,052 - 106,256,618 (-)NCBI
PanPan1.18108,368,117 - 108,401,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034966490   ⟹   XP_034822381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBI
RefSeq Acc Id: XM_034966491   ⟹   XP_034822382
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,340,380 (-)NCBI
RefSeq Acc Id: XM_034966492   ⟹   XP_034822383
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,023,429 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,544,406 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,297,465 (-)NCBI
RefSeq Acc Id: XM_034966493   ⟹   XP_034822384
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,023,413 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,544,392 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,297,465 (-)NCBI
RefSeq Acc Id: XM_034966494   ⟹   XP_034822385
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,055,512 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,576,483 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,329,632 (-)NCBI
RefSeq Acc Id: XM_034966496   ⟹   XP_034822387
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,023,413 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,544,392 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,297,398 (-)NCBI
RefSeq Acc Id: XM_034966497   ⟹   XP_034822388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,023,429 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,544,406 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,297,398 (-)NCBI
RefSeq Acc Id: XM_034966499   ⟹   XP_034822390
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,055,512 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,576,484 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,329,356 (-)NCBI
RefSeq Acc Id: XM_034966501   ⟹   XP_034822392
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,066,166 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,587,148 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,340,128 (-)NCBI
RefSeq Acc Id: XM_034966502   ⟹   XP_034822393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,066,166 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,587,148 (-)NCBI
Mhudiblu_PPA_v08106,223,046 - 106,340,236 (-)NCBI
RefSeq Acc Id: XM_057303074   ⟹   XP_057159057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,019,889 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,540,869 (-)NCBI
RefSeq Acc Id: XM_057303075   ⟹   XP_057159058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,019,889 (-)NCBI
NHGRI_mPanPan18102,469,864 - 102,540,868 (-)NCBI
RefSeq Acc Id: XM_063606873   ⟹   XP_063462943
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27126,948,878 - 127,019,534 (-)NCBI
RefSeq Acc Id: XP_008973479   ⟸   XM_008975231
- Peptide Label: isoform X5
- UniProtKB: A0A2R9AQN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034822381   ⟸   XM_034966490
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822382   ⟸   XM_034966491
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822393   ⟸   XM_034966502
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AQQ1 (UniProtKB/TrEMBL),   A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822392   ⟸   XM_034966501
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822385   ⟸   XM_034966494
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822390   ⟸   XM_034966499
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822383   ⟸   XM_034966492
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822384   ⟸   XM_034966493
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822388   ⟸   XM_034966497
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822387   ⟸   XM_034966496
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000019663   ⟸   ENSPPAT00000042433
Ensembl Acc Id: ENSPPAP00000019667   ⟸   ENSPPAT00000042437
Ensembl Acc Id: ENSPPAP00000019682   ⟸   ENSPPAT00000042452
RefSeq Acc Id: XP_057159057   ⟸   XM_057303074
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057159058   ⟸   XM_057303075
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462943   ⟸   XM_063606873
- Peptide Label: isoform X6
- UniProtKB: A0A2R9AR72 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033028 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042433.1 UniProtKB/TrEMBL
  ENSPPAT00000042437.1 UniProtKB/TrEMBL
  ENSPPAT00000042452.1 UniProtKB/TrEMBL
InterPro Syntaphilin/Syntabulin UniProtKB/TrEMBL
KEGG Report pps:100995430 UniProtKB/TrEMBL
NCBI Gene SYBU ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN UniProtKB/TrEMBL
  PTHR16208:SF4 UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/TrEMBL
UniProt A0A2R9AQN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AQQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AR72 ENTREZGENE, UniProtKB/TrEMBL