PPP1R3C (protein phosphatase 1 regulatory subunit 3C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PPP1R3C (protein phosphatase 1 regulatory subunit 3C) Sus scrofa
Analyze
Symbol: PPP1R3C
Name: protein phosphatase 1 regulatory subunit 3C
RGD ID: 14190216
Description: ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); glycogen metabolic process (ortholog); regulation of glycogen biosynthetic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); prostate cancer (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); glycogen granule (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein phosphatase 1, regulatory (inhibitor) subunit 3C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,273,405 - 103,278,762 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114103,273,401 - 103,278,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214112,652,689 - 112,657,293 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
glycogen granule  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PPP1R3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,273,405 - 103,278,762 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114103,273,401 - 103,278,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214112,652,689 - 112,657,293 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381091,628,442 - 91,633,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1091,628,442 - 91,633,071 (-)EnsemblGRCh38hg38GRCh38
GRCh371093,388,199 - 93,392,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361093,378,179 - 93,382,838 (-)NCBINCBI36Build 36hg18NCBI36
Build 341093,378,180 - 93,382,838NCBI
Celera1087,131,841 - 87,136,500 (-)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1087,016,754 - 87,021,415 (-)NCBIHuRef
CHM1_11093,669,964 - 93,674,625 (-)NCBICHM1_1
T2T-CHM13v2.01092,511,668 - 92,516,296 (-)NCBIT2T-CHM13v2.0
Ppp1r3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,709,131 - 36,714,004 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,709,131 - 36,714,053 (-)EnsemblGRCm39 Ensembl
GRCm381936,731,731 - 36,736,604 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1936,731,731 - 36,736,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371936,806,221 - 36,811,094 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361936,796,877 - 36,801,797 (-)NCBIMGSCv36mm8
Celera1937,506,440 - 37,511,313 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1931.89NCBI
Ppp1r3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81243,873,524 - 243,878,527 (-)NCBIGRCr8
mRatBN7.21234,460,958 - 234,465,961 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,460,652 - 234,465,961 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,855,971 - 242,860,979 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01249,778,292 - 249,783,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,616,484 - 242,621,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01255,371,830 - 255,376,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,371,810 - 255,376,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01262,628,937 - 262,633,940 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,991,884 - 240,996,887 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11241,175,278 - 241,180,280 (-)NCBI
Celera1231,556,257 - 231,561,260 (-)NCBICelera
Cytogenetic Map1q53NCBI
Ppp1r3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,606,069 - 1,611,586 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554251,606,069 - 1,611,001 (+)NCBIChiLan1.0ChiLan1.0
PPP1R3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28103,668,222 - 103,673,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110103,673,537 - 103,678,379 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01088,377,396 - 88,382,205 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11091,900,112 - 91,904,764 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1091,900,112 - 91,904,764 (-)Ensemblpanpan1.1panPan2
PPP1R3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,167,532 - 6,172,057 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,168,917 - 6,172,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha286,341,554 - 6,346,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,423,121 - 6,427,666 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,423,123 - 6,427,604 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,146,246 - 6,150,797 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,178,972 - 6,183,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,342,849 - 6,347,399 (-)NCBIUU_Cfam_GSD_1.0
Ppp1r3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721341,297,720 - 41,302,426 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,930,208 - 2,935,092 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,930,250 - 2,935,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1984,918,592 - 84,923,281 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl984,918,591 - 84,923,334 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604845,645,616 - 45,650,669 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247372,893,256 - 2,901,452 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247372,896,677 - 2,901,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPP1R3C
73 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 1 5 14 12 23 3 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000011452   ⟹   ENSSSCP00000011154
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14103,273,405 - 103,278,762 (-)Ensembl
RefSeq Acc Id: XM_005671280   ⟹   XP_005671337
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114103,273,401 - 103,278,757 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005671337   ⟸   XM_005671280
- UniProtKB: F1SCX0 (UniProtKB/TrEMBL),   A0A4X1V0S1 (UniProtKB/TrEMBL),   Q3I3W3 (UniProtKB/TrEMBL),   A0A8D1NKW8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000011154   ⟸   ENSSSCT00000011452
Protein Domains
CBM21


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010464 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073757 UniProtKB/TrEMBL
  ENSSSCG00025005397 UniProtKB/TrEMBL
  ENSSSCG00030046631 UniProtKB/TrEMBL
  ENSSSCG00035000902 UniProtKB/TrEMBL
  ENSSSCG00040014571 UniProtKB/TrEMBL
  ENSSSCG00045005462 UniProtKB/TrEMBL
  ENSSSCG00050066401 UniProtKB/TrEMBL
  ENSSSCG00055019071 UniProtKB/TrEMBL
  ENSSSCG00060023057 UniProtKB/TrEMBL
  ENSSSCG00065004036 UniProtKB/TrEMBL
  ENSSSCG00070020877 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011452 ENTREZGENE
  ENSSSCT00000011452.5 UniProtKB/TrEMBL
  ENSSSCT00015099197.1 UniProtKB/TrEMBL
  ENSSSCT00025007259.1 UniProtKB/TrEMBL
  ENSSSCT00030065025.1 UniProtKB/TrEMBL
  ENSSSCT00035001070.1 UniProtKB/TrEMBL
  ENSSSCT00040019522.1 UniProtKB/TrEMBL
  ENSSSCT00045009072.1 UniProtKB/TrEMBL
  ENSSSCT00050090437.1 UniProtKB/TrEMBL
  ENSSSCT00055037295.1 UniProtKB/TrEMBL
  ENSSSCT00060031305.1 UniProtKB/TrEMBL
  ENSSSCT00065005545.1 UniProtKB/TrEMBL
  ENSSSCT00070041492.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2440 UniProtKB/TrEMBL
InterPro CBM21_dom UniProtKB/TrEMBL
  CBM21_dom_sf UniProtKB/TrEMBL
  Pase-1_reg-su_3B/C/D_met UniProtKB/TrEMBL
  PP1_3C UniProtKB/TrEMBL
  PP1_regulatory_subunit_3 UniProtKB/TrEMBL
KEGG Report ssc:641349 UniProtKB/TrEMBL
NCBI Gene PPP1R3C ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT UniProtKB/TrEMBL
  PTHR12307:SF15 UniProtKB/TrEMBL
Pfam CBM_21 UniProtKB/TrEMBL
PIRSF PP1_GT_animal UniProtKB/TrEMBL
  PP1_PTG UniProtKB/TrEMBL
PROSITE CBM21 UniProtKB/TrEMBL
UniProt A0A4X1V0S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NKW8 ENTREZGENE, UniProtKB/TrEMBL
  F1SCX0 ENTREZGENE
  Q3I3W3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1SCX0 UniProtKB/TrEMBL
VGNC ID VGNC:91737 ENTREZGENE