CIMIP5 (ciliary microtubule inner protein 5) - Rat Genome Database

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Gene: CIMIP5 (ciliary microtubule inner protein 5) Sus scrofa
Analyze
Symbol: CIMIP5
Name: ciliary microtubule inner protein 5
RGD ID: 14166137
Description: FOUND IN cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C3H2orf50; chromosome 3 C2orf50 homolog; uncharacterized protein C2orf50 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13125,520,922 - 125,526,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,183,959 - 134,193,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
CIMIP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13125,520,922 - 125,526,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,183,959 - 134,193,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38211,133,128 - 11,154,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl211,133,128 - 11,151,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37211,273,254 - 11,291,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36211,190,630 - 11,203,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera211,188,994 - 11,202,728 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef211,123,012 - 11,136,737 (+)NCBIHuRef
CHM1_1211,202,785 - 11,216,519 (+)NCBICHM1_1
T2T-CHM13v2.0211,162,478 - 11,183,718 (+)NCBIT2T-CHM13v2.0
Cimip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,054,958 - 17,061,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,053,320 - 17,061,728 (-)EnsemblGRCm39 Ensembl
GRCm381217,004,958 - 17,011,758 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,003,319 - 17,011,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,011,764 - 17,018,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,031,070 - 17,079,436 (-)NCBIMGSCv36mm8
Celera1217,328,730 - 17,372,814 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
Cimip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,520,575 - 45,525,810 (-)NCBIGRCr8
mRatBN7.2639,792,416 - 39,797,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,790,913 - 39,797,090 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,123,403 - 40,129,555 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,438,112 - 40,444,264 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0639,871,401 - 39,877,553 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,306,788 - 42,313,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,306,788 - 42,312,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,026,112 - 52,032,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4640,692,672 - 40,698,799 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera639,098,911 - 39,105,046 (-)NCBICelera
Cytogenetic Map6q16NCBI
Cimip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554875,843,411 - 5,847,738 (+)NCBIChiLan1.0ChiLan1.0
CIMIP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,371,785 - 115,393,592 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,375,754 - 115,397,563 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A11,122,309 - 11,143,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,272,390 - 11,286,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,272,390 - 11,286,375 (+)Ensemblpanpan1.1panPan2
C17H2orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,898,117 - 7,906,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,898,070 - 7,905,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,830,014 - 7,838,143 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0178,000,947 - 8,009,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl178,000,670 - 8,008,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,886,187 - 7,894,315 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,889,300 - 7,897,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,909,392 - 7,917,685 (+)NCBIUU_Cfam_GSD_1.0
Cimip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,359,603 - 52,369,327 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365327,114,921 - 7,121,405 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365327,115,070 - 7,121,433 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,475,769 - 96,489,392 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,479,073 - 96,488,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,792,719 - 15,804,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,600,267 - 4,602,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,597,333 - 4,602,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CIMIP5
301 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021087840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021087840   ⟹   XP_020943499
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13125,520,922 - 125,526,031 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020943499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00035002657.1
RefSeq Acc Id: XP_020943499   ⟸   XM_021087840
- UniProtKB: A0A8D0YFQ3 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00035006249 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00035007784.1 UniProtKB/TrEMBL
NCBI Gene C3H2orf50 ENTREZGENE
PANTHER CHROMOSOME 20 ORF85 FAMILY MEMBER UniProtKB/TrEMBL
  RIKEN CDNA 2410004P03 GENE UniProtKB/TrEMBL
UniProt A0A8D0YFQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-27 CIMIP5  ciliary microtubule inner protein 5  C3H2orf50  chromosome 3 C2orf50 homolog  Symbol and/or name change 5135510 APPROVED