Cimip5 (ciliary microtubule inner protein 5) - Rat Genome Database

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Gene: Cimip5 (ciliary microtubule inner protein 5) Mus musculus
Analyze
Symbol: Cimip5 (Ensembl: 2410004P03Rik)
Name: ciliary microtubule inner protein 5 (Ensembl:RIKEN cDNA 2410004P03 gene)
RGD ID: 1617486
MGI Page MGI
Description: Orthologous to human C2orf50 (chromosome 2 open reading frame 50).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410004P03Rik; hypothetical protein LOC73667; uncharacterized protein C2orf50 homolog; uncharacterized protein LOC73667
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,054,958 - 17,061,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,053,320 - 17,061,728 (-)EnsemblGRCm39 Ensembl
GRCm381217,004,958 - 17,011,758 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,003,319 - 17,011,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,011,764 - 17,018,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,031,070 - 17,079,436 (-)NCBIMGSCv36mm8
Celera1217,328,730 - 17,372,814 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
Cimip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,054,958 - 17,061,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,053,320 - 17,061,728 (-)EnsemblGRCm39 Ensembl
GRCm381217,004,958 - 17,011,758 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,003,319 - 17,011,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,011,764 - 17,018,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,031,070 - 17,079,436 (-)NCBIMGSCv36mm8
Celera1217,328,730 - 17,372,814 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
CIMIP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38211,133,128 - 11,154,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl211,133,128 - 11,151,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37211,273,254 - 11,291,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36211,190,630 - 11,203,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera211,188,994 - 11,202,728 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef211,123,012 - 11,136,737 (+)NCBIHuRef
CHM1_1211,202,785 - 11,216,519 (+)NCBICHM1_1
T2T-CHM13v2.0211,162,478 - 11,183,718 (+)NCBIT2T-CHM13v2.0
Cimip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,520,575 - 45,525,810 (-)NCBIGRCr8
mRatBN7.2639,792,416 - 39,797,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,790,913 - 39,797,090 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,123,403 - 40,129,555 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,438,112 - 40,444,264 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0639,871,401 - 39,877,553 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,306,788 - 42,313,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,306,788 - 42,312,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,026,112 - 52,032,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4640,692,672 - 40,698,799 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera639,098,911 - 39,105,046 (-)NCBICelera
Cytogenetic Map6q16NCBI
Cimip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554875,843,411 - 5,847,738 (+)NCBIChiLan1.0ChiLan1.0
CIMIP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,371,785 - 115,393,592 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,375,754 - 115,397,563 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A11,122,309 - 11,143,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,272,390 - 11,286,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,272,390 - 11,286,375 (+)Ensemblpanpan1.1panPan2
C17H2orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,898,117 - 7,906,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,898,070 - 7,905,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,830,014 - 7,838,143 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0178,000,947 - 8,009,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl178,000,670 - 8,008,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,886,187 - 7,894,315 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,889,300 - 7,897,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,909,392 - 7,917,685 (+)NCBIUU_Cfam_GSD_1.0
Cimip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,359,603 - 52,369,327 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365327,114,921 - 7,121,405 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365327,115,070 - 7,121,433 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13125,520,922 - 125,526,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,183,959 - 134,193,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,475,769 - 96,489,392 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,479,073 - 96,488,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,792,719 - 15,804,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,600,267 - 4,602,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,597,333 - 4,602,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cimip5
257 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:510
Count of miRNA genes:332
Interacting mature miRNAs:377
Transcripts:ENSMUST00000095823
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse

Markers in Region
D12Mit58  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381217,038,020 - 17,038,137UniSTSGRCm38
MGSCv371217,044,826 - 17,044,943UniSTSGRCm37
Celera1217,361,718 - 17,361,841UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map126.0UniSTS
Whitehead Genetic125.5UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000095823   ⟹   ENSMUSP00000093503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,053,320 - 17,061,728 (-)Ensembl
GRCm38.p6 Ensembl1217,003,319 - 17,011,727 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189479   ⟹   ENSMUSP00000140028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,057,141 - 17,061,504 (-)Ensembl
GRCm38.p6 Ensembl1217,007,140 - 17,011,503 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190691   ⟹   ENSMUSP00000140390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1217,055,591 - 17,061,555 (-)Ensembl
GRCm38.p6 Ensembl1217,005,590 - 17,011,554 (-)Ensembl
RefSeq Acc Id: NM_001201332   ⟹   NP_001188261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,054,958 - 17,061,555 (-)NCBI
GRCm381217,004,958 - 17,011,727 (-)NCBI
Celera1217,328,096 - 17,334,937 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001201333   ⟹   NP_001188262
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,054,958 - 17,061,555 (-)NCBI
GRCm381217,004,958 - 17,011,727 (-)NCBI
Celera1217,328,096 - 17,334,937 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515231   ⟹   XP_006515294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,055,713 - 17,061,759 (-)NCBI
GRCm381217,005,712 - 17,011,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157628   ⟹   XP_036013521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391217,055,713 - 17,061,759 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001188262   ⟸   NM_001201333
- Peptide Label: isoform 2
- UniProtKB: A0A087WQY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001188261   ⟸   NM_001201332
- Peptide Label: isoform 1
- UniProtKB: D3Z430 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515294   ⟸   XM_006515231
- Peptide Label: isoform X1
- UniProtKB: D3Z430 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000140390   ⟸   ENSMUST00000190691
Ensembl Acc Id: ENSMUSP00000093503   ⟸   ENSMUST00000095823
Ensembl Acc Id: ENSMUSP00000140028   ⟸   ENSMUST00000189479
RefSeq Acc Id: XP_036013521   ⟸   XM_036157628
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WQY2-F1-model_v2 AlphaFold A0A087WQY2 1-205 view protein structure

Promoters
RGD ID:8677960
Promoter ID:EPDNEW_M17011
Type:initiation region
Name:2410004P03Rik_1
Description:Mus musculus RIKEN cDNA 2410004P03 gene , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381217,011,554 - 17,011,614EPDNEW
RGD ID:6822557
Promoter ID:MM_KWN:11224
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:AK010406_2410004P03RIK,   ENSMUST00000095823,   UC007NCM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361217,018,271 - 17,018,771 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920917 AgrOrtholog
Ensembl Genes ENSMUSG00000071398 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095823 ENTREZGENE
  ENSMUST00000095823.9 UniProtKB/TrEMBL
  ENSMUST00000189479.2 UniProtKB/TrEMBL
  ENSMUST00000190691 ENTREZGENE
  ENSMUST00000190691.2 UniProtKB/TrEMBL
InterPro Uncharacterised_C20orf85 UniProtKB/TrEMBL
KEGG Report mmu:73667 UniProtKB/TrEMBL
MGD MGI:1920917 ENTREZGENE
NCBI Gene 73667 ENTREZGENE
PANTHER CHROMOSOME 20 ORF85 FAMILY MEMBER UniProtKB/TrEMBL
  RIKEN CDNA 2410004P03 GENE UniProtKB/TrEMBL
Pfam LLC1 UniProtKB/TrEMBL
PhenoGen Cimip5 PhenoGen
UniProt A0A087WQ37_MOUSE UniProtKB/TrEMBL
  A0A087WQY2 ENTREZGENE, UniProtKB/TrEMBL
  D3Z430 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-09-23 Cimip5  ciliary microtubule inner protein 5  2410004P03Rik  RIKEN cDNA 2410004P03 gene  Symbol and/or name updated 27372883 PROVISIONAL