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Gene: C17H2orf50 (chromosome 17 C2orf50 homolog) Canis lupus familiaris

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Symbol:

C17H2orf50 (Ensembl: C2orf50)

Name:

chromosome 17 C2orf50 homolog (Ensembl:chromosome 2 open reading frame 50)

RGD ID:

12334006

Description:

FOUND IN cilium (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome 17 open reading frame, human C2orf50; uncharacterized protein C2orf50 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	7,898,117 - 7,906,038 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	7,898,070 - 7,905,270 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	7,830,014 - 7,838,143 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	8,000,947 - 8,009,095 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	8,000,670 - 8,008,286 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	7,886,187 - 7,894,315 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	7,889,300 - 7,897,594 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	7,909,392 - 7,917,685 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cilium (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

C17H2orf50
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	7,898,117 - 7,906,038 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	7,898,070 - 7,905,270 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	7,830,014 - 7,838,143 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	8,000,947 - 8,009,095 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	8,000,670 - 8,008,286 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	7,886,187 - 7,894,315 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	7,889,300 - 7,897,594 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	7,909,392 - 7,917,685 (+)	NCBI		UU_Cfam_GSD_1.0

CIMIP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	11,133,128 - 11,154,576 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	11,133,128 - 11,151,317 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	11,273,254 - 11,291,443 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	11,190,630 - 11,203,603 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	11,188,994 - 11,202,728 (+)	NCBI		Celera
Cytogenetic Map	2	p25.1	NCBI
HuRef	2	11,123,012 - 11,136,737 (+)	NCBI		HuRef
CHM1_1	2	11,202,785 - 11,216,519 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	11,162,478 - 11,183,718 (+)	NCBI		T2T-CHM13v2.0

Cimip5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	17,054,958 - 17,061,759 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	17,053,320 - 17,061,728 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	17,004,958 - 17,011,758 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	17,003,319 - 17,011,727 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	17,011,764 - 17,018,533 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	17,031,070 - 17,079,436 (-)	NCBI		MGSCv36	mm8
Celera	12	17,328,730 - 17,372,814 (-)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	8.04	NCBI

Cimip5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	45,520,575 - 45,525,810 (-)	NCBI		GRCr8
mRatBN7.2	6	39,792,416 - 39,797,072 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	39,790,913 - 39,797,090 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	40,123,403 - 40,129,555 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	40,438,112 - 40,444,264 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	39,871,401 - 39,877,553 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	42,306,788 - 42,313,322 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	42,306,788 - 42,312,935 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	52,026,112 - 52,032,258 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	40,692,672 - 40,698,799 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	39,098,911 - 39,105,046 (-)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

Cimip5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955487	5,843,411 - 5,847,738 (+)	NCBI	ChiLan1.0	ChiLan1.0

CIMIP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	115,371,785 - 115,393,592 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	115,375,754 - 115,397,563 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	11,122,309 - 11,143,343 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	11,272,390 - 11,286,375 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	11,272,390 - 11,286,375 (+)	Ensembl	panpan1.1		panPan2

Cimip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	52,359,603 - 52,369,327 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936532	7,114,921 - 7,121,405 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936532	7,115,070 - 7,121,433 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIMIP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	125,520,922 - 125,526,031 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	134,183,959 - 134,193,660 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIMIP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	96,475,769 - 96,489,392 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	96,479,073 - 96,488,991 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	15,792,719 - 15,804,261 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimip5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624865	4,600,267 - 4,602,927 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624865	4,597,333 - 4,602,969 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C17H2orf50
160 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005630122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022404445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038499892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038560584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038624604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038690524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000005602 ⟹ ENSCAFP00000005189

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	7,898,070 - 7,905,270 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845047971 ⟹ ENSCAFP00845037638

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	17	8,000,670 - 8,008,286 (+)	Ensembl

RefSeq Acc Id:

XM_022404445 ⟹ XP_022260153

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	7,898,117 - 7,906,038 (+)	NCBI
Dog10K_Boxer_Tasha	17	7,830,014 - 7,838,143 (+)	NCBI

Sequence:

show sequence

CACAGGCAGAAGCTCAAAACACAGCGGCTCCAGCGCTCTCCCCGCCGACTTCAGCCACTCGGAG
CCTGGGGCCTGGGGGGCGGCGGGGAGGACCCCCGCCCAGGCTCAGCCCGGAGCCTCTCTCTCCT
GTGTCTCTCTCGATCTCTCCACTTCTCTGTCTTTCTCTGTCTCTCTCTGTCTCCCCATCACACC
CGTACCCATGGGGAGCCCCCCCACCCCTGGGCTCCAGAAAACCTCGTCCGCTGGGTACCGGCTG
CCCTCAACCAGGCCGCCAGCCGTAGATTCCCGCACTGCCCGAGGTGGCCCCGCGGTGGGCAGGG
GTCGCCAAGCCCCCCAGGCCCCAGAAGCGGAGCGCTGGGCCCTGGGAACGAACGGTGTGCAGCG
GGACCAGCTGTGGAGGGAGCTCTTGGAGGCCGAGAGGAGGGGCCAGCAGCGCTGGGCTCAGCAC
TGGAGTTTCCTGAAAGACTACGATCCCCTGGGCAATAAGAAGGAGCCCGTGAAGCTGCCAGAGT
ACGTGCCTCTCTTCTCCGACACAGTCCCCAACTCCACGAACCAGGTTGTGGGCAGCAGGGTGGG
CACGCCCCTGGGGCAAACCCTCATCGGCATGGACTTTTTCTTTGTGGACGGAGTCCGGAAGAAG
AAGCTGGAAGCCGAGCTGCAGCCCGTGTAGGAGGAAGAGGAGGAGGAGGAGGAGGGCTGGCTGG
CCTGCCTCAGGTGGGTGTAGGGGTGGCGCGGGGAGGGAGGCCAGCCCCAGGGCCCCAGTCAACA
GCCCACACGTGTCCGCCAGCCTCTCCTTCTCTCCCGGCCCCGCACAGCCTTCCCGAGGCTCCAC
TGGCCCATTTTCACACATGAGCTCAGAAGGACTCCAGGAGCTTGCCCGTGGCCCTGGACCCGGC
AGCGGTGGGGACCCCCTCTCGAGGCCCAGGAGGGGCAGCCCTGGGTTTGCAGTCATGAGCTGAC
CGCCTGGGTTCAAGTCCCGCTCCTGACTCTGAGCAGCTGTTGCACGGGTTGTTCGAACCTTCTG
TGCTGCTGTAACAAGTAGGCCACACGCCGAGGGGCTGGAAACAGCACATACGTATTATCTCACA
GCGCTGGAGGTCAGAAATCCAAAGTGGTCTCACCGGACTGAAATCAAGGTGTGCACAGGGCTGC
GTTTCTTTCAGGCCACTAAAGGCACCTGAGTCCTCGCCTTTTCCAGCTTCTAGAGGAGAGACTG
CCCTCATTCCTCGGCCCGTGACTCCCTCCTCTCCAAGCAGAATGGGAGCATCGCCAATCTCCAA
ACCTCTCTCGGCCTCCCTCCTTCCATCTTTTCAGACAGCCAGGATAATCTCTCCATCTCACCGT
TCTTAATCATGTCTGCAAAATCCCTTTTGCGTGTAAGGTAACATATCCACAGGGCCCAGGGACT
AGGACACGGACGTCTTTGGTGGGCCATTTTTCTGCCTACCACATACAGAAATAATAAAAGTACT
GATTCTAGAA

hide sequence

RefSeq Acc Id:

XM_038499892 ⟹ XP_038355820

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	7,886,187 - 7,894,315 (+)	NCBI

RefSeq Acc Id:

XM_038560584 ⟹ XP_038416512

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	7,909,392 - 7,917,685 (+)	NCBI

RefSeq Acc Id:

XM_038624604 ⟹ XP_038480532

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	7,889,300 - 7,897,594 (+)	NCBI

RefSeq Acc Id:

XM_038690524 ⟹ XP_038546452

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	8,000,947 - 8,009,095 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_022260153	(Get FASTA)	NCBI Sequence Viewer
	XP_038355820	(Get FASTA)	NCBI Sequence Viewer
	XP_038416512	(Get FASTA)	NCBI Sequence Viewer
	XP_038480532	(Get FASTA)	NCBI Sequence Viewer
	XP_038546452	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000005189.2
	ENSCAFP00030010716.1
	ENSCAFP00845037638.1

RefSeq Acc Id:	XP_022260153 ⟸ XM_022404445
- UniProtKB:	A0A8C0MRT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSPPTPGLQKTSSAGYRLPSTRPPAVDSRTARGGPAVGRGRQAPQAPEAERWALGTNGVQRDQ LWRELLEAERRGQQRWAQHWSFLKDYDPLGNKKEPVKLPEYVPLFSDTVPNSTNQVVGSRVGTP LGQTLIGMDFFFVDGVRKKKLEAELQPV hide sequence

Ensembl Acc Id:

ENSCAFP00000005189 ⟸ ENSCAFT00000005602

RefSeq Acc Id:

XP_038355820 ⟸ XM_038499892

RefSeq Acc Id:

XP_038480532 ⟸ XM_038624604

RefSeq Acc Id:	XP_038546452 ⟸ XM_038690524
- UniProtKB:	A0A8C0MRT3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038416512 ⟸ XM_038560584
- UniProtKB:	A0A8C0MRT3 (UniProtKB/TrEMBL), A0A8C0R8L7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845037638 ⟸ ENSCAFT00845047971

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000003486	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006642	UniProtKB/TrEMBL
	ENSCAFG00845027230	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000005602.4	UniProtKB/TrEMBL
	ENSCAFT00030012248.1	UniProtKB/TrEMBL
	ENSCAFT00845047971.1	UniProtKB/TrEMBL
NCBI Gene	C17H2orf50	ENTREZGENE
PANTHER	CHROMOSOME 20 ORF85 FAMILY MEMBER	UniProtKB/TrEMBL
	RIKEN CDNA 2410004P03 GENE	UniProtKB/TrEMBL
UniProt	A0A8C0MRT3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0R8L7	ENTREZGENE
	A0A8I3Q0C6_CANLF	UniProtKB/TrEMBL
	A0A8P0N6D1_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:54281	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-12	C17H2orf50	chromosome 17 C2orf50 homolog		chromosome 17 open reading frame, human C2orf50	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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