MYO15A (myosin XVA) - Rat Genome Database

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Gene: MYO15A (myosin XVA) Sus scrofa
Analyze
Symbol: MYO15A
Name: myosin XVA
RGD ID: 14164235
Description: INVOLVED IN inner ear morphogenesis (ortholog); locomotory behavior (ortholog); response to light stimulus (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Alport syndrome (ortholog); autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN stereocilium (ortholog); stereocilium bundle (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unconventional myosin-XV
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11260,533,502 - 60,582,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
MYO15A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11260,533,502 - 60,582,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MYO15A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,108,756 - 18,179,800 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,108,756 - 18,179,802 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,012,070 - 18,083,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,952,745 - 18,023,841 (+)NCBINCBI36Build 36hg18NCBI36
Build 341717,952,744 - 18,023,840NCBI
Celera1718,953,160 - 19,024,251 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,765,392 - 17,836,464 (+)NCBIHuRef
CHM1_11718,020,789 - 18,091,861 (+)NCBICHM1_1
T2T-CHM13v2.01718,055,569 - 18,126,619 (+)NCBIT2T-CHM13v2.0
Myo15a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,360,165 - 60,419,195 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,360,165 - 60,419,195 (+)EnsemblGRCm39 Ensembl
GRCm381160,469,339 - 60,528,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,469,339 - 60,528,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,282,841 - 60,341,871 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,007,838 - 61,067,005 (+)NCBIMGSCv36mm8
MGSCv361160,285,534 - 60,344,564 (+)NCBIMGSCv36mm8
Celera1164,710,231 - 64,711,213 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
Myo15a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,776,907 - 45,835,473 (+)NCBIGRCr8
mRatBN7.21045,277,619 - 45,335,953 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,278,737 - 45,335,340 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01046,840,098 - 46,897,362 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,840,113 - 46,896,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,595,676 - 46,660,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,742,535 - 46,798,928 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1044,535,548 - 44,591,592 (+)NCBICelera
Cytogenetic Map10q22NCBI
Myo15a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547811,132,719 - 11,186,378 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547811,131,908 - 11,186,465 (-)NCBIChiLan1.0ChiLan1.0
LOC100971960
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21953,085,248 - 53,159,407 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,796,388 - 57,870,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,661,499 - 32,723,320 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,033,646 - 38,091,376 (-)NCBIpanpan1.1PanPan1.1panPan2
MYO15A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,369,484 - 41,421,303 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,370,509 - 41,392,881 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,507,455 - 41,559,211 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,474,709 - 41,526,462 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1541,442,539 - 41,494,282 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,389,966 - 41,441,709 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,581,821 - 41,633,567 (-)NCBIUU_Cfam_GSD_1.0
Myo15a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,142,863 - 61,197,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,669,680 - 1,723,891 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,669,680 - 1,724,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO15A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,157,275 - 17,217,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,157,490 - 17,218,009 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,687,568 - 3,750,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo15a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,284,085 - 3,344,759 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,283,180 - 3,345,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MYO15A
1364 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021067996   ⟹   XP_020923655
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11260,533,502 - 60,582,645 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020923655 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020923655   ⟸   XM_021067996
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene MYO15A ENTREZGENE