MYO15A (myosin XVA) - Rat Genome Database

MYO15A (myosin XVA) - Rat Genome Database

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Gene: MYO15A (myosin XVA) Canis lupus familiaris

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Symbol:

MYO15A

Name:

myosin XVA

RGD ID:

12354057

Description:

ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN inner ear morphogenesis (ortholog); locomotory behavior (ortholog); response to light stimulus (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Alport syndrome (ortholog); autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN stereocilium (ortholog); stereocilium bundle (ortholog)

Type:

protein-coding

RefSeq Status:

Previously known as:

myosin-XV; unconventional myosin-XV

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYO15A (myosin XVA)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Myo15a (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Myo15a (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myo15a (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100971960 (unconventional myosin-XV)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myo15a (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYO15A (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYO15A (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myo15a (myosin XVA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,369,484 - 41,421,303 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,370,509 - 41,392,881 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	41,507,455 - 41,559,211 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,474,709 - 41,526,462 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	41,442,539 - 41,494,282 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,389,966 - 41,441,709 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	41,581,821 - 41,633,567 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	blindness	induces	ISO	XCO:0000181	9068941	compared to LEW/Ztm	RGD	PMID:21479269\|REF_RGD_ID:150429616
MYO15A	Dog	blindness	induces	ISO	RGD:1561873	9068941	DNA:missense mutation:cds:exon 56 T>C, p.Leu3157Pro (rat)	RGD	PMID:21479269\|REF_RGD_ID:150429616

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	Alport syndrome		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Alport syndrome	ClinVar	PMID:28492532\|PMID:30311386
MYO15A	Dog	autistic disorder		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311
MYO15A	Dog	autosomal recessive nonsyndromic deafness		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Autosomal recessive nonsyndromic deafness \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:16199547\|PMID:17546645\|PMID:17576681\|PMID:19309289\|PMID:25373420\|PMID:25741868\|PMID:26969326\|PMID:27375115\|PMID:27573290\|PMID:28492532\|PMID:30303587\|PMID:30311386\|PMID:30953472\|PMID:35346193\|PMID:35440622\|PMID:35802133\|PMID:36633841\|PMID:9536098
MYO15A	Dog	autosomal recessive nonsyndromic deafness 3		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Autosomal recessive nonsyndromic hearing loss 3 \| ClinVar Annotator: match more ...	ClinVar	PMID:10552926\|PMID:11735029\|PMID:12408074\|PMID:16199547\|PMID:17546645\|PMID:17576681\|PMID:17851452\|PMID:17853461\|PMID:19274735\|PMID:19888295\|PMID:20505086\|PMID:20642360\|PMID:21917145\|PMID:22245518\|PMID:22736430\|PMID:22903915\|PMID:23208854\|PMID:23767834\|PMID:23804846\|PMID:23865914\|PMID:23967202\|PMID:24033266\|PMID:24105371\|PMID:24123792\|PMID:24130743\|PMID:24206587\|PMID:24498627\|PMID:24853665\|PMID:24875298\|PMID:24949729\|PMID:25262649\|PMID:25373420\|PMID:2574186\|PMID:25741868\|PMID:25788563\|PMID:25792667\|PMID:26011067\|PMID:26075876\|PMID:26226137\|PMID:26242193\|PMID:26302205\|PMID:26399936\|PMID:26445815\|PMID:26467025\|PMID:26561413\|PMID:26633542\|PMID:26763877\|PMID:26810297\|PMID:26915297\|PMID:26969326\|PMID:27068579\|PMID:27344577\|PMID:27375115\|PMID:27436265\|PMID:27573290\|PMID:27635202\|PMID:27734841\|PMID:27870113\|PMID:28000701\|PMID:28383030\|PMID:28390610\|PMID:28492532\|PMID:29196752\|PMID:29482514\|PMID:29692870\|PMID:29907799\|PMID:29986705\|PMID:30096381\|PMID:30139988\|PMID:30303587\|PMID:30311386\|PMID:30579064\|PMID:30622556\|PMID:30682115\|PMID:30733538\|PMID:30828794\|PMID:30896630\|PMID:30953472\|PMID:31053783\|PMID:31130284\|PMID:31379920\|PMID:31389194\|PMID:31579092\|PMID:31581539\|PMID:31827275\|PMID:31850270\|PMID:31980526\|PMID:31992338\|PMID:32279305\|PMID:32387678\|PMID:32617096\|PMID:32623615\|PMID:32658404\|PMID:32747562\|PMID:32802042\|PMID:32860223\|PMID:33095980\|PMID:33111345\|PMID:33187236\|PMID:33208113\|PMID:33297549\|PMID:33398081\|PMID:33524517\|PMID:33597575\|PMID:33879512\|PMID:34062854\|PMID:34265623\|PMID:34325055\|PMID:34374074\|PMID:34388253\|PMID:34416374\|PMID:34599368\|PMID:34733312\|PMID:34744965\|PMID:34795337\|PMID:34974475\|PMID:35052694\|PMID:35062939\|PMID:35346193\|PMID:35440622\|PMID:35580552\|PMID:35640668\|PMID:35802133\|PMID:35939872\|PMID:35982127\|PMID:36217262\|PMID:36401330\|PMID:36472766\|PMID:36504663\|PMID:36568381\|PMID:36570450\|PMID:36597107\|PMID:36633841\|PMID:37107638\|PMID:37811145\|PMID:39333430\|PMID:7616538\|PMID:7704031\|PMID:9536098\|PMID:9603736
MYO15A	Dog	autosomal recessive nonsyndromic deafness 9		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Deafness, autosomal recessive 9	ClinVar	PMID:25741868\|PMID:28492532\|PMID:28964305
MYO15A	Dog	Birt-Hogg-Dube syndrome		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Birt-Hogg-Dube syndrome	ClinVar	PMID:20188345\|PMID:28492532
MYO15A	Dog	cleft palate		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Cleft palate	ClinVar	PMID:24033266\|PMID:25741868\|PMID:26445815\|PMID:27375115\|PMID:28492532
MYO15A	Dog	common variable immunodeficiency 2		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Immunodeficiency, common variable, 2	ClinVar	PMID:28492532
MYO15A	Dog	congenital diaphragmatic hernia		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Agenesis of hemidiaphragm	ClinVar	PMID:24033266\|PMID:25741868\|PMID:26445815\|PMID:27375115\|PMID:28492532
MYO15A	Dog	Deafness, with Smith-Magenis Syndrome		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Deafness, with smith-magenis syndrome	ClinVar	PMID:11735029\|PMID:17546645\|PMID:19274735\|PMID:24033266\|PMID:25741868\|PMID:28492532
MYO15A	Dog	Developmental Disabilities		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Global developmental delay	ClinVar	PMID:24033266\|PMID:25741868\|PMID:26445815\|PMID:27375115\|PMID:28492532
MYO15A	Dog	epilepsy		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Seizure	ClinVar	PMID:24033266\|PMID:25741868\|PMID:26445815\|PMID:27375115\|PMID:28492532
MYO15A	Dog	genetic disease		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:15654330\|PMID:17546645\|PMID:17851452\|PMID:21917145\|PMID:23767834\|PMID:24033266\|PMID:2574186\|PMID:25741868\|PMID:25792667\|PMID:26242193\|PMID:26467025\|PMID:27375115\|PMID:27870113\|PMID:28492532\|PMID:29178603\|PMID:30311386\|PMID:30622556\|PMID:30953472\|PMID:31827275\|PMID:32747562\|PMID:33398081\|PMID:33784549\|PMID:34519870\|PMID:7616538\|PMID:7704031
MYO15A	Dog	Hearing Loss		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Hearing impairment \| ClinVar Annotator: match by term: Nonsyndromic Hearing more ...	ClinVar	PMID:16199547\|PMID:17546645\|PMID:17576681\|PMID:17853461\|PMID:19309289\|PMID:20505086\|PMID:21917145\|PMID:23208854\|PMID:23767834\|PMID:24033266\|PMID:24123792\|PMID:24875298\|PMID:25373420\|PMID:2574186\|PMID:25741868\|PMID:25792667\|PMID:26242193\|PMID:26969326\|PMID:27375115\|PMID:27573290\|PMID:27870113\|PMID:28000701\|PMID:28492532\|PMID:30303587\|PMID:30311386\|PMID:30622556\|PMID:30953472\|PMID:31379920\|PMID:31827275\|PMID:31980526\|PMID:32747562\|PMID:33398081\|PMID:33524517\|PMID:35346193\|PMID:35440622\|PMID:35802133\|PMID:36633841\|PMID:7616538\|PMID:7704031\|PMID:9536098
MYO15A	Dog	Joubert syndrome 1		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532
MYO15A	Dog	Myoectodermal Gonadal Dysgenesis Syndrome		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: MYOECTODERMAL GONADAL DYSGENESIS SYNDROME	ClinVar	PMID:17576681\|PMID:25741868\|PMID:28492532\|PMID:9536098
MYO15A	Dog	nonsyndromic deafness		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Non-syndromic genetic deafness \| ClinVar Annotator: match by term: Nonsyndromic more ...	ClinVar	PMID:11735029\|PMID:17546645\|PMID:19274735\|PMID:20642360\|PMID:23208854\|PMID:24033266\|PMID:24123792\|PMID:24875298\|PMID:25741868\|PMID:26969326\|PMID:27068579\|PMID:27734841\|PMID:27870113\|PMID:28000701\|PMID:28492532\|PMID:30311386\|PMID:31589614\|PMID:31980526\|PMID:32747562\|PMID:33398081\|PMID:35346193\|PMID:7704031\|PMID:9603736
MYO15A	Dog	Potocki-Lupski syndrome		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Potocki-Lupski syndrome	ClinVar	PMID:28837307
MYO15A	Dog	sensorineural hearing loss		ISO	RGD:1343693	8554872	ClinVar Annotator: match by term: Congenital sensorineural hearing impairment	ClinVar	PMID:17546645\|PMID:17576681\|PMID:24033266\|PMID:24875298\|PMID:25741868\|PMID:26969326\|PMID:28492532\|PMID:32860223\|PMID:9536098

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	autosomal recessive nonsyndromic deafness 3		ISO	RGD:1343693	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	inner ear morphogenesis	acts_upstream_of_or_within	ISO	MGI:1857036	9068941	PMID:11718241, PMID:14724386	MGI	PMID:11718241\|PMID:14724386
MYO15A	Dog	locomotory behavior	acts_upstream_of_or_within	ISO	MGI:1857036	9068941	PMID:16962269	MGI	PMID:16962269
MYO15A	Dog	response to light stimulus		ISO	RGD:1561873	9068941		RGD	PMID:21479269\|REF_RGD_ID:150429616
MYO15A	Dog	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1857036	9068941	PMID:11718241, PMID:14724386	MGI	PMID:11718241\|PMID:14724386

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
MYO15A	Dog	cytoskeleton	located_in	IEA	InterPro:IPR000299\|InterPro:IPR000857	150520179		InterPro	GO_REF:0000002
MYO15A	Dog	stereocilium	located_in	ISO	RGD:1615958	9068941	PMID:20016102	MGI	PMID:20016102
MYO15A	Dog	stereocilium bundle	located_in	ISO	RGD:1615958	9068941	PMID:20016102	MGI	PMID:20016102

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	actin binding	enables	IEA	UniProtKB-KW:KW-0009	150520179		UniProt	GO_REF:0000043
MYO15A	Dog	protein binding	enables	ISO	UniProtKB:Q80VW5	9068941	PMID:15590698, PMID:15654330	UniProt	PMID:15590698\|PMID:15654330
MYO15A	Dog	protein binding	enables	ISO	UniProtKB:Q08509	9068941	PMID:21236676	UniProt	PMID:21236676

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
MYO15A	Dog	auditory mechanotransduction pathway		ISO	RGD:1343693	9068941		RGD	PMID:19804752\|REF_RGD_ID:8547667

PMID:22301074

MYO15A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,369,484 - 41,421,303 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,370,509 - 41,392,881 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	41,507,455 - 41,559,211 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,474,709 - 41,526,462 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	41,442,539 - 41,494,282 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,389,966 - 41,441,709 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	41,581,821 - 41,633,567 (-)	NCBI		UU_Cfam_GSD_1.0

MYO15A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	18,108,756 - 18,179,800 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	18,108,756 - 18,179,802 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	18,012,070 - 18,083,114 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	17,952,745 - 18,023,841 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	17,952,744 - 18,023,840	NCBI
Celera	17	18,953,160 - 19,024,251 (+)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	17,765,392 - 17,836,464 (+)	NCBI		HuRef
CHM1_1	17	18,020,789 - 18,091,861 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	18,055,569 - 18,126,619 (+)	NCBI		T2T-CHM13v2.0

Myo15a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	60,360,165 - 60,419,195 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	60,360,165 - 60,419,195 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	60,469,339 - 60,528,369 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	60,469,339 - 60,528,369 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	60,282,841 - 60,341,871 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	61,007,838 - 61,067,005 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	60,285,534 - 60,344,564 (+)	NCBI		MGSCv36	mm8
Celera	11	64,710,231 - 64,711,213 (-)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	37.81	NCBI

Myo15a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,776,907 - 45,835,473 (+)	NCBI		GRCr8
mRatBN7.2	10	45,277,619 - 45,335,953 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	45,278,737 - 45,335,340 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	46,840,098 - 46,897,362 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,840,113 - 46,896,054 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	46,595,676 - 46,660,835 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	46,742,535 - 46,798,928 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	44,535,548 - 44,591,592 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Myo15a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	11,132,719 - 11,186,378 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	11,131,908 - 11,186,465 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100971960
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	53,085,248 - 53,159,407 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	57,796,388 - 57,870,842 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	32,661,499 - 32,723,320 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	38,033,646 - 38,091,376 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

Myo15a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,142,863 - 61,197,568 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	1,669,680 - 1,723,891 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	1,669,680 - 1,724,929 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYO15A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	60,533,502 - 60,582,645 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MYO15A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	17,157,275 - 17,217,609 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	17,157,490 - 17,218,009 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	3,687,568 - 3,750,880 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myo15a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	3,284,085 - 3,344,759 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	3,283,180 - 3,345,456 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

.

Variants in MYO15A
480 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
2	2	18	18	9	2	3	2	4	13	11	9	14	7


RefSeq Transcripts	XM_022418652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000029106 ⟹ ENSCAFP00000027065

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	41,370,509 - 41,392,881 (-)	Ensembl

RefSeq Acc Id:

XM_038475906 ⟹ XP_038331834

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	41,442,539 - 41,494,282 (-)	NCBI

RefSeq Acc Id:

XM_038518203 ⟹ XP_038374131

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	5	41,507,455 - 41,559,211 (-)	NCBI

RefSeq Acc Id:

XM_038537096 ⟹ XP_038393024

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	41,581,821 - 41,633,567 (-)	NCBI

RefSeq Acc Id:

XM_038601227 ⟹ XP_038457155

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	41,389,966 - 41,441,709 (-)	NCBI

RefSeq Acc Id:

XM_038665789 ⟹ XP_038521717

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	41,474,709 - 41,526,462 (-)	NCBI


Protein RefSeqs	XP_038331834	(Get FASTA)	NCBI Sequence Viewer
	XP_038374131	(Get FASTA)	NCBI Sequence Viewer
	XP_038393024	(Get FASTA)	NCBI Sequence Viewer
	XP_038457155	(Get FASTA)	NCBI Sequence Viewer
	XP_038521717	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000027065.5
	ENSCAFP00030002010.1
	ENSCAFP00040005007.1

Ensembl Acc Id:

ENSCAFP00000027065 ⟸ ENSCAFT00000029106

RefSeq Acc Id:	XP_038331834 ⟸ XM_038475906
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038457155 ⟸ XM_038601227
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038521717 ⟸ XM_038665789
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L9X0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038374131 ⟸ XM_038518203
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L9X0 (UniProtKB/TrEMBL)

Protein Domains

FERM MyTH4 SH3

RGD ID:

Promoter ID:

Type:

single initiation site

Name:

MYO15A_1

Description:

myosin XVA

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	41,419,668 - 41,419,728	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018319	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001251	UniProtKB/TrEMBL
	ENSCAFG00040003040	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000029106.7	UniProtKB/TrEMBL
	ENSCAFT00030002266.1	UniProtKB/TrEMBL
	ENSCAFT00040005807.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.530	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	Band_41_domain	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_central	UniProtKB/TrEMBL
	FERM_domain	UniProtKB/TrEMBL
	MyTH4_dom	UniProtKB/TrEMBL
	MyTH4_dom_sf	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	Unconventional_Myosin_ATPase	UniProtKB/TrEMBL
NCBI Gene	MYO15A	ENTREZGENE
PANTHER	MYOSIN VII, XV	UniProtKB/TrEMBL
	PTHR22692:SF21	UniProtKB/TrEMBL
Pfam	FERM_M	UniProtKB/TrEMBL
	MyTH4	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
PROSITE	FERM_3	UniProtKB/TrEMBL
	MYTH4	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	B41	UniProtKB/TrEMBL
	MyTH4	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47031	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A8C0L9X0	ENTREZGENE
	A0A8C0Q080_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:43555	ENTREZGENE