PLA2G2D (phospholipase A2 group IID) - Rat Genome Database

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Gene: PLA2G2D (phospholipase A2 group IID) Sus scrofa
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Symbol: PLA2G2D
Name: phospholipase A2 group IID
RGD ID: 14156485
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent phospholipase A2 activity (inferred); heparan sulfate proteoglycan binding (inferred); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); negative regulation of T cell activation (ortholog); negative regulation of T cell proliferation (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN extracellular region (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: group IID secretory phospholipase A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,391,066 - 78,397,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,391,063 - 78,397,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,580,441 - 72,587,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PLA2G2D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,391,066 - 78,397,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,391,063 - 78,397,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,580,441 - 72,587,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G2D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,111,939 - 20,119,536 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,111,939 - 20,119,566 (-)EnsemblGRCh38hg38GRCh38
GRCh37120,438,432 - 20,446,029 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,311,019 - 20,318,595 (-)NCBINCBI36Build 36hg18NCBI36
Build 34120,183,741 - 20,191,314NCBI
Celera118,761,553 - 18,769,129 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef118,684,974 - 18,691,890 (-)NCBIHuRef
CHM1_1120,548,848 - 20,555,764 (-)NCBICHM1_1
T2T-CHM13v2.0119,935,588 - 19,943,185 (-)NCBIT2T-CHM13v2.0
Pla2g2d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,503,046 - 138,509,363 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,503,046 - 138,509,357 (+)EnsemblGRCm39 Ensembl
GRCm384138,775,735 - 138,782,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,775,735 - 138,782,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv374138,331,650 - 138,338,058 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364138,047,811 - 138,054,219 (+)NCBIMGSCv36mm8
Celera4140,558,983 - 140,565,391 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.57NCBI
Pla2g2d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,299,374 - 156,305,816 (+)NCBIGRCr8
mRatBN7.25151,016,010 - 151,022,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,018,870 - 151,022,525 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,714,211 - 153,720,401 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,488,513 - 155,494,703 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,469,996 - 155,476,182 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,222,636 - 157,228,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,222,636 - 157,228,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,962,324 - 160,970,156 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,594,706 - 157,600,865 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,604,744 - 157,610,900 (+)NCBI
Celera5149,404,051 - 149,410,210 (+)NCBICelera
Cytogenetic Map5q36NCBI
Pla2g2d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955452736,600 - 743,806 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955452738,133 - 743,718 (-)NCBIChiLan1.0ChiLan1.0
PLA2G2D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,999,131 - 207,007,142 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11206,115,929 - 206,123,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,066,890 - 19,074,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,110,664 - 20,117,583 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,110,323 - 20,117,618 (-)Ensemblpanpan1.1panPan2
PLA2G2D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,739,826 - 78,745,839 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,739,769 - 78,745,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,253,368 - 75,260,612 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,305,947 - 79,313,189 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,305,982 - 79,313,914 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,125,252 - 76,132,491 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,131,831 - 77,139,073 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,202,771 - 78,210,014 (+)NCBIUU_Cfam_GSD_1.0
Pla2g2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,342,725 - 40,347,968 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364746,167,507 - 6,172,750 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364746,167,507 - 6,172,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G2D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120112,434,208 - 112,441,215 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20112,434,276 - 112,441,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660333,743,003 - 3,750,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g2d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247645,224,018 - 5,229,609 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247645,224,071 - 5,229,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLA2G2D
226 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
9 2 5 1 2 5 7 7 5 3 3

Sequence


Ensembl Acc Id: ENSSSCT00000058054   ⟹   ENSSSCP00000038538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl678,391,066 - 78,397,515 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000089697   ⟹   ENSSSCP00000059738
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl678,391,979 - 78,397,515 (-)Ensembl
RefSeq Acc Id: NM_001244695   ⟹   NP_001231624
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1678,391,063 - 78,397,394 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001231624   ⟸   NM_001244695
- Peptide Label: precursor
- UniProtKB: A0A287A3L1 (UniProtKB/TrEMBL),   A0A4X1W585 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000038538   ⟸   ENSSSCT00000058054
Ensembl Acc Id: ENSSSCP00000059738   ⟸   ENSSSCT00000089697
Protein Domains
Phospholipase A2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031106 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015011193 UniProtKB/TrEMBL
  ENSSSCG00025019378 UniProtKB/TrEMBL
  ENSSSCG00030047949 UniProtKB/TrEMBL
  ENSSSCG00035071367 UniProtKB/TrEMBL
  ENSSSCG00040049874 UniProtKB/TrEMBL
  ENSSSCG00045016150 UniProtKB/TrEMBL
  ENSSSCG00050078985 UniProtKB/TrEMBL
  ENSSSCG00055012587 UniProtKB/TrEMBL
  ENSSSCG00060039882 UniProtKB/TrEMBL
  ENSSSCG00065033945 UniProtKB/TrEMBL
  ENSSSCG00070028914 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058054 ENTREZGENE
  ENSSSCT00000058054.3 UniProtKB/TrEMBL
  ENSSSCT00000089697.2 UniProtKB/TrEMBL
  ENSSSCT00015014715.1 UniProtKB/TrEMBL
  ENSSSCT00015014750.1 UniProtKB/TrEMBL
  ENSSSCT00025026303.1 UniProtKB/TrEMBL
  ENSSSCT00025026329.1 UniProtKB/TrEMBL
  ENSSSCT00025026346.1 UniProtKB/TrEMBL
  ENSSSCT00030066963.1 UniProtKB/TrEMBL
  ENSSSCT00030066985.1 UniProtKB/TrEMBL
  ENSSSCT00035096483.1 UniProtKB/TrEMBL
  ENSSSCT00035096491.1 UniProtKB/TrEMBL
  ENSSSCT00040067275.1 UniProtKB/TrEMBL
  ENSSSCT00040067320.1 UniProtKB/TrEMBL
  ENSSSCT00045027446.1 UniProtKB/TrEMBL
  ENSSSCT00045027477.1 UniProtKB/TrEMBL
  ENSSSCT00045027503.1 UniProtKB/TrEMBL
  ENSSSCT00050109029.1 UniProtKB/TrEMBL
  ENSSSCT00050109030.1 UniProtKB/TrEMBL
  ENSSSCT00050109031.1 UniProtKB/TrEMBL
  ENSSSCT00055024741.1 UniProtKB/TrEMBL
  ENSSSCT00055024766.1 UniProtKB/TrEMBL
  ENSSSCT00055024794.1 UniProtKB/TrEMBL
  ENSSSCT00060054003.1 UniProtKB/TrEMBL
  ENSSSCT00060054005.1 UniProtKB/TrEMBL
  ENSSSCT00065046194.1 UniProtKB/TrEMBL
  ENSSSCT00065046203.1 UniProtKB/TrEMBL
  ENSSSCT00070057982.1 UniProtKB/TrEMBL
  ENSSSCT00070057986.1 UniProtKB/TrEMBL
  ENSSSCT00070057988.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.90.10 UniProtKB/TrEMBL
InterPro PLipase_A2 UniProtKB/TrEMBL
  PLipase_A2_dom UniProtKB/TrEMBL
  PLipase_A2_dom_sf UniProtKB/TrEMBL
  PLipase_A2_His_AS UniProtKB/TrEMBL
NCBI Gene PLA2G2D ENTREZGENE
PANTHER GROUP IID SECRETORY PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  PTHR11716 UniProtKB/TrEMBL
Pfam Phospholip_A2_1 UniProtKB/TrEMBL
PRINTS PHPHLIPASEA2 UniProtKB/TrEMBL
PROSITE PA2_HIS UniProtKB/TrEMBL
SMART PA2c UniProtKB/TrEMBL
Superfamily-SCOP SSF48619 UniProtKB/TrEMBL
UniProt A0A287A3L1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W585 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W5F3_PIG UniProtKB/TrEMBL
  A0A4X1W6R2_PIG UniProtKB/TrEMBL
  A0A5G2Q6U2_PIG UniProtKB/TrEMBL
  A0A8D0R5M1_PIG UniProtKB/TrEMBL
  A0A8D1QM43_PIG UniProtKB/TrEMBL
  A0A8D1TS04_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91491 ENTREZGENE