SLC27A5 (solute carrier family 27 member 5)

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Gene: SLC27A5 (solute carrier family 27 member 5) Sus scrofa

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Symbol:

SLC27A5

Name:

solute carrier family 27 member 5

RGD ID:

14150330

Description:

ENCODES a protein that exhibits cholate-CoA ligase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN bile acid metabolic process (ortholog); establishment of localization in cell (ortholog); fatty acid transport (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

bile acyl-CoA synthetase; bile acyl-CoA synthetase pseudogene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,065,830 - 63,075,202 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,068,880 - 63,075,246 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myoepithelioma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bile acid biosynthetic process (IEA)

bile acid metabolic process (IBA,IEA,ISO)

establishment of localization in cell (IEA,ISO)

fatty acid metabolic process (IEA)

fatty acid transport (IEA,ISO)

ketone body biosynthetic process (IEA,ISO)

lipid metabolic process (IEA)

long-chain fatty acid import across plasma membrane (IEA,ISO)

long-chain fatty acid import into cell (IBA)

long-chain fatty acid metabolic process (IBA)

triglyceride mobilization (IEA,ISO)

very long-chain fatty acid metabolic process (IEA)

Cellular Component

basal plasma membrane (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IBA,IEA)

plasma membrane (IBA)

protein-containing complex (ISO)

Molecular Function

cholate-CoA ligase activity (IEA,ISO)

fatty acid transmembrane transporter activity (IEA)

ligase activity (IEA)

long-chain fatty acid transmembrane transporter activity (IBA,IEA)

long-chain fatty acid-CoA ligase activity (IBA)

nucleotide binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

very long-chain fatty acid-CoA ligase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

bile acid biosynthetic pathway (ISO)

cerebrotendinous xanthomatosis pathway (ISO)

congenital bile acid synthesis defect pathway (ISO)

familial hypercholanemia pathway (ISO)

Zellweger syndrome pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SLC27A5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,065,830 - 63,075,202 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,068,880 - 63,075,246 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC27A5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	58,498,333 - 58,511,992 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	58,479,512 - 58,512,413 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	59,009,700 - 59,023,359 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,701,517 - 63,715,161 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	63,701,517 - 63,715,157	NCBI
Celera	19	56,053,816 - 56,067,542 (-)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	55,319,377 - 55,333,864 (-)	NCBI		HuRef
CHM1_1	19	59,003,732 - 59,017,394 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	61,594,402 - 61,607,985 (-)	NCBI		T2T-CHM13v2.0

Slc27a5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,722,273 - 12,732,119 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,722,273 - 12,732,119 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	12,988,346 - 12,998,192 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	12,988,346 - 12,998,192 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,573,695 - 13,583,541 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	11,888,532 - 11,898,329 (-)	NCBI		MGSCv36	mm8
Celera	7	10,613,981 - 10,626,137 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.71	NCBI

Slc27a5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,688,742 - 82,699,335 (-)	NCBI		GRCr8
mRatBN7.2	1	73,616,556 - 73,627,149 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,616,564 - 73,627,172 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	78,996,966 - 79,007,611 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,561,304 - 87,571,949 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,752,046 - 80,762,691 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,576,599 - 65,587,192 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,576,535 - 65,587,186 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,387,832 - 66,398,425 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,924,630 - 72,935,223 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	73,002,740 - 73,013,332 (+)	NCBI
Celera	1	60,212,177 - 60,222,770 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Slc27a5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955584	1,112,117 - 1,121,323 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955584	1,112,387 - 1,121,500 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC27A5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	64,768,032 - 64,788,131 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	66,555,906 - 66,576,003 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	55,507,455 - 55,520,448 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	64,329,567 - 64,342,630 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	64,329,567 - 64,342,630 (-)	Ensembl	panpan1.1		panPan2

SLC27A5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	99,435,140 - 99,438,388 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	99,833,542 - 99,842,039 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	100,048,410 - 100,056,905 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	100,041,887 - 100,056,901 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	99,693,751 - 99,702,249 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	99,406,581 - 99,415,077 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	100,161,220 - 100,169,717 (+)	NCBI		UU_Cfam_GSD_1.0

Slc27a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	218,019,774 - 218,029,145 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937062	89,664 - 98,113 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937062	90,217 - 98,562 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC27A5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,782,713 - 50,793,816 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	50,781,544 - 50,792,515 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	4,088,423 - 4,092,128 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc27a5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	84,552 - 92,556 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	84,456 - 92,706 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLC27A5
17 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	ectoderm	endocrine system	mesenchyme	nervous system	reproductive system
2	9	3	1	9	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021097370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01109314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000037862 ⟹ ENSSSCP00000051828

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,065,830 - 63,075,200 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000046975 ⟹ ENSSSCP00000054107

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,068,888 - 63,075,202 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000076198 ⟹ ENSSSCP00000063417

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,068,885 - 63,075,202 (-)	Ensembl

RefSeq Acc Id:

XM_021097370 ⟹ XP_020953029

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,068,880 - 63,075,246 (-)	NCBI

Sequence:

show sequence

GGGGCTGACGGGCTCTCAGCCGGGGCAGAGGAGCGCGCTCCTGGACACTTCGCTGAGGCAGGAG
CAGGTGCCATGGGCATCCAGGGGCGACTGGCCTTTTTGGTGCTGCTGCTGTTGCTGCTGCGAGG
CCTGGGGTGGCCCGCGTGGCCTGCGGCAGTGGCCCTGGCACTGCGCTGGCTCCTGGGAGACTCC
GCCTGCTGTGTGCTGCTGGGCCTGGCTGTGCTGGCGTGGCCTTGGCTGGGCCCCTGGATGCCCC
ACTGGCTGAGTTTGGCAGCTGCGGCCCTCACGCTGGCTCTGCTGCCTGCGCGGCCACCCCCAGG
GCTGCGCTGGCTGCCCGCTGACCTGGGCTACCTCTTCGGGACCCTGCGCCTGGGCCTGAACATC
CAGGCACGCTTGAGGCGCCGGCCGCCTGACACCTTCATCGATTCCTTTGAGCGGCGAGCACGAG
CGCAGCCGGGGCGCCAGATCTTGGTGTGGACCGGGCCGGGGAGCCAGACGGTCACCTTCGGGGA
GCTGGACGCCAGGGCCTGCCGGGCAGCTTGGGTCATGAAGGCCGAGCTGGGAGACGCCCTGGGC
CCGCACGAGAGGGAGCCCACTGCCCTGCTGATGCTGCCCTCGCAGACCGTTCCTGCCCTGGGCC
TGTGGCTGGGGCTGGCCAAGCTGGGCTGTCCGGTTGCCTGGATCAATCCGCACGGCCGGGGGGC
ACCCCTGGTGCACGCGGTGCTGAGCTCGGGGGCTCGGGTGCTGGTGGTGGACCCAGGCCTCCGG
GAGAACCTGGAGGAGATCCTTCCCAAGCTGCAGGCAGAGAACATCCGCTGCTTCTACCTGGGCC
ACTCCTCCCCCACCCCGGGGGTGGGGGCTCTGGGAGCCGCCCTGGATGCTGCGCCCTCAGACCC
CGTGCCCGCTGACCTGCGTGCTGAGATCAAGCTGCGGAGCCCCGCCCTGTTCATCTACACCTCA
GGGACCACGGGGCTCCCGAAGCCAGCCATCCTCACGTACGAGCGGGTGCTGCAGATAAGTGGGA
TGCTGACCCTGTGCGGGGTCACGGCTGATGACGTGGTCTACTCGGTCCTGCCTCTGTACCACAC
AATGGGGCTCGTCCTTGGGGTCCTCAGCTGCTTGGAACTGGGCGTGACCTGTGTCCTGGCCCCC
AAGTTCTCTGCCTCCCGCTTCTGGGACGACTGCCGGCAGCATGGCGTGACTGTGATCCAGTACG
TGGGCGAGGTCCTGCGGTACCTGTGCAACACTCCCCAGGTAAGTCGCCAGATGAGGCCTCCAGC
CACCCCTCCGTGTCGCTTCAGGGACAGGTCCCAGGTAACCTCTGCAGGCAACCCTTACAAGTAC
CTCTCCGGGTACAAACTCCCGCGGCCTGAGGACCGGTCACATTCAGTCCGCCTGGCTATTGGAA
GTGGGCTCCGGGCAGAAGTGTGGGAGACCTTCCAGCAGCGCTTCGGCCCCATTCAGATCTGGGA
AGCCTACGGCGCCACAGAAGGCAATGTCGGCTTTGTCAACTACCCAGGGCGCTGTGGGGCCCAG
GGCAAGTCGAACTGCTTCCTCCGAATGATGTCCCCCTTCGAGCTCGTGCAGTTCAGCATGGAGA
CGGAGGAGCCTGTGAGGGACAAGCAGGGCTTCTGCATCCCTGTGGGGCCAGGGGAGCCGGGGCT
CCTGCTGACCCAGGTGCTGGCCCGCCAGCCTTTCGTGGGCTACCGCGGGCCCCGCGAGCAGACG
GAAAAGAAGTTGGTGTACAACGTGCGGCGCCCAAACGACGTTTACTACAACACCGGGGACGTGC
TGGCCATGGACCGCGAAGGCTTCCTCTACTTCCGCGACCGCCTGGGCGACACCTTCCGGTGGAA
GGGAGAGAACGTGTCCACGCGAGAGGTGGAGGGCGTGCTGTCACTCGTGGACTTCCTGCAGGAG
GTGAACGTCTACGGTGTGGCTGTGCCAGGGTGTGAGGGTAAGGTGGGCATGGCTGCCGTGCAGC
TGGCCCCCGGCCAGACCTTCGACGGGCGGAGGCTATACGAGCACGTGCGCAACTGGCTCCCTGC
CTATGCTGCCCCCCATTTCATTCGTATCCAGGACACCTTGGAGACCACAAGCACGTTCAAACTG
GTGAAGTCCCGGCTGGTGCGCGAAGGCTTCAACGTGGGCGTTGTTGCCGACCCCCTGTTCGTGC
TGGACCACCAGGCCCGCGCCTTCCAGCCCCTGACACCAGACATATACCAGGCGGTGTGTGAGGG
CACCTGGCGACTCTGACAGTCTAGTCAGCCCGCAGGACATCCAGAGGCGCTGGGCCCAAGGCGG
CAGGACCATCCCCCACGTGTATGGTCCCCAGGAGCCCCGGCCTGGCCTTATCCCCAGCTGCTCA
GTGTGAGCCAACCCTGAGCCCTTGGCAGATGGAGAATAAACTCGGATGTGCACACGGA

hide sequence

RefSeq Acc Id:

XM_021097371 ⟹ XP_020953030

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,068,880 - 63,075,245 (-)	NCBI

Sequence:

show sequence

GGGCTGACGGGCTCTCAGCCGGGGCAGAGGAGCGCGCTCCTGGACACTTCGCTGAGGCAGGAGC
AGGTGCCATGGGCATCCAGGGGCGACTGGCCTTTTTGGTGCTGCTGCTGTTGCTGCTGCGAGGC
CTGGGGTGGCCCGCGTGGCCTGCGGCAGTGGCCCTGGCACTGCGCTGGCTCCTGGGAGACTCCG
CCTGCTGTGTGCTGCTGGGCCTGGCTGTGCTGGCGTGGCCTTGGCTGGGCCCCTGGATGCCCCA
CTGGCTGAGTTTGGCAGCTGCGGCCCTCACGCTGGCTCTGCTGCCTGCGCGGCCACCCCCAGGG
CTGCGCTGGCTGCCCGCTGACCTGGGCTACCTCTTCGGGACCCTGCGCCTGGGCCTGAACATCC
AGGCACGCTTGAGGCGCCGGCCGCCTGACACCTTCATCGATTCCTTTGAGCGGCGAGCACGAGC
GCAGCCGGGGCGCCAGATCTTGGTGTGGACCGGGCCGGGGAGCCAGACGGTCACCTTCGGGGAG
CTGGACGCCAGGGCCTGCCGGGCAGCTTGGGTCATGAAGGCCGAGCTGGGAGACGCCCTGGGCC
CGCACGAGAGGGAGCCCACTGCCCTGCTGATGCTGCCCTCGCAGACCGTTCCTGCCCTGGGCCT
GTGGCTGGGGCTGGCCAAGCTGGGCTGTCCGGTTGCCTGGATCAATCCGCACGGCCGGGGGGCA
CCCCTGGTGCACGCGGTGCTGAGCTCGGGGGCTCGGGTGCTGGTGGTGGACCCAGGCCTCCGGG
AGAACCTGGAGGAGATCCTTCCCAAGCTGCAGGCAGAGAACATCCGCTGCTTCTACCTGGGCCA
CTCCTCCCCCACCCCGGGGGTGGGGGCTCTGGGAGCCGCCCTGGATGCTGCGCCCTCAGACCCC
GTGCCCGCTGACCTGCGTGCTGAGATCAAGCTGCGGAGCCCCGCCCTGTTCATCTACACCTCAG
GGACCACGGGGCTCCCGAAGCCAGCCATCCTCACGTACGAGCGGGTGCTGCAGATAAGTGGGAT
GCTGACCCTGTGCGGGGTCACGGCTGATGACGTGGTCTACTCGGTCCTGCCTCTGTACCACACA
ATGGGGCTCGTCCTTGGGGTCCTCAGCTGCTTGGAACTGGGCGTGACCTGTGTCCTGGCCCCCA
AGTTCTCTGCCTCCCGCTTCTGGGACGACTGCCGGCAGCATGGCGTGACTGTGATCCAGTACGT
GGGCGAGGTCCTGCGGTACCTGTGCAACACTCCCCAGGTAAGTCGCCAGATGAGGCCTCCAGCC
ACCCCTCCGTGTCGCTTCAGGGACAGGTCCCAGCGGCCTGAGGACCGGTCACATTCAGTCCGCC
TGGCTATTGGAAGTGGGCTCCGGGCAGAAGTGTGGGAGACCTTCCAGCAGCGCTTCGGCCCCAT
TCAGATCTGGGAAGCCTACGGCGCCACAGAAGGCAATGTCGGCTTTGTCAACTACCCAGGGCGC
TGTGGGGCCCAGGGCAAGTCGAACTGCTTCCTCCGAATGATGTCCCCCTTCGAGCTCGTGCAGT
TCAGCATGGAGACGGAGGAGCCTGTGAGGGACAAGCAGGGCTTCTGCATCCCTGTGGGGCCAGG
GGAGCCGGGGCTCCTGCTGACCCAGGTGCTGGCCCGCCAGCCTTTCGTGGGCTACCGCGGGCCC
CGCGAGCAGACGGAAAAGAAGTTGGTGTACAACGTGCGGCGCCCAAACGACGTTTACTACAACA
CCGGGGACGTGCTGGCCATGGACCGCGAAGGCTTCCTCTACTTCCGCGACCGCCTGGGCGACAC
CTTCCGGTGGAAGGGAGAGAACGTGTCCACGCGAGAGGTGGAGGGCGTGCTGTCACTCGTGGAC
TTCCTGCAGGAGGTGAACGTCTACGGTGTGGCTGTGCCAGGGTGTGAGGGTAAGGTGGGCATGG
CTGCCGTGCAGCTGGCCCCCGGCCAGACCTTCGACGGGCGGAGGCTATACGAGCACGTGCGCAA
CTGGCTCCCTGCCTATGCTGCCCCCCATTTCATTCGTATCCAGGACACCTTGGAGACCACAAGC
ACGTTCAAACTGGTGAAGTCCCGGCTGGTGCGCGAAGGCTTCAACGTGGGCGTTGTTGCCGACC
CCCTGTTCGTGCTGGACCACCAGGCCCGCGCCTTCCAGCCCCTGACACCAGACATATACCAGGC
GGTGTGTGAGGGCACCTGGCGACTCTGACAGTCTAGTCAGCCCGCAGGACATCCAGAGGCGCTG
GGCCCAAGGCGGCAGGACCATCCCCCACGTGTATGGTCCCCAGGAGCCCCGGCCTGGCCTTATC
CCCAGCTGCTCAGTGTGAGCCAACCCTGAGCCCTTGGCAGATGGAGAATAAACTCGGATGTGCA
CACGGA

hide sequence

RefSeq Acc Id:

XM_021097372 ⟹ XP_020953031

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,068,880 - 63,075,243 (-)	NCBI

Sequence:

show sequence

GCTGACGGGCTCTCAGCCGGGGCAGAGGAGCGCGCTCCTGGACACTTCGCTGAGGCAGGAGCAG
GTGCCATGGGCATCCAGGGGCGACTGGCCTTTTTGGTGCTGCTGCTGTTGCTGCTGCGAGGCCT
GGGGTGGCCCGCGTGGCCTGCGGCAGTGGCCCTGGCACTGCGCTGGCTCCTGGGAGACTCCGCC
TGCTGTGTGCTGCTGGGCCTGGCTGTGCTGGCGTGGCCTTGGCTGGGCCCCTGGATGCCCCACT
GGCTGAGTTTGGCAGCTGCGGCCCTCACGCTGGCTCTGCTGCCTGCGCGGCCACCCCCAGGGCT
GCGCTGGCTGCCCGCTGACCTGGGCTACCTCTTCGGGACCCTGCGCCTGGGCCTGAACATCCAG
GCACGCTTGAGGCGCCGGCCGCCTGACACCTTCATCGATTCCTTTGAGCGGCGAGCACGAGCGC
AGCCGGGGCGCCAGATCTTGGTGTGGACCGGGCCGGGGAGCCAGACGGTCACCTTCGGGGAGCT
GGACGCCAGGGCCTGCCGGGCAGCTTGGGTCATGAAGGCCGAGCTGGGAGACGCCCTGGGCCCG
CACGAGAGGGAGCCCACTGCCCTGCTGATGCTGCCCTCGCAGACCGTTCCTGCCCTGGGCCTGT
GGCTGGGGCTGGCCAAGCTGGGCTGTCCGGTTGCCTGGATCAATCCGCACGGCCGGGGGGCACC
CCTGGTGCACGCGGTGCTGAGCTCGGGGGCTCGGGTGCTGGTGGTGGACCCAGGCCTCCGGGAG
AACCTGGAGGAGATCCTTCCCAAGCTGCAGGCAGAGAACATCCGCTGCTTCTACCTGGGCCACT
CCTCCCCCACCCCGGGGGTGGGGGCTCTGGGAGCCGCCCTGGATGCTGCGCCCTCAGACCCCGT
GCCCGCTGACCTGCGTGCTGAGATCAAGCTGCGGAGCCCCGCCCTGTTCATCTACACCTCAGGG
ACCACGGGGCTCCCGAAGCCAGCCATCCTCACGTACGAGCGGGTGCTGCAGATAAGTGGGATGC
TGACCCTGTGCGGGGTCACGGCTGATGACGTGGTCTACTCGGTCCTGCCTCTGTACCACACAAT
GGGGCTCGTCCTTGGGGTCCTCAGCTGCTTGGAACTGGGCGTGACCTGTGTCCTGGCCCCCAAG
TTCTCTGCCTCCCGCTTCTGGGACGACTGCCGGCAGCATGGCGTGACTGTGATCCAGTACGTGG
GCGAGGTCCTGCGGTACCTGTGCAACACTCCCCAGCGGCCTGAGGACCGGTCACATTCAGTCCG
CCTGGCTATTGGAAGTGGGCTCCGGGCAGAAGTGTGGGAGACCTTCCAGCAGCGCTTCGGCCCC
ATTCAGATCTGGGAAGCCTACGGCGCCACAGAAGGCAATGTCGGCTTTGTCAACTACCCAGGGC
GCTGTGGGGCCCAGGGCAAGTCGAACTGCTTCCTCCGAATGATGTCCCCCTTCGAGCTCGTGCA
GTTCAGCATGGAGACGGAGGAGCCTGTGAGGGACAAGCAGGGCTTCTGCATCCCTGTGGGGCCA
GGGGAGCCGGGGCTCCTGCTGACCCAGGTGCTGGCCCGCCAGCCTTTCGTGGGCTACCGCGGGC
CCCGCGAGCAGACGGAAAAGAAGTTGGTGTACAACGTGCGGCGCCCAAACGACGTTTACTACAA
CACCGGGGACGTGCTGGCCATGGACCGCGAAGGCTTCCTCTACTTCCGCGACCGCCTGGGCGAC
ACCTTCCGGTGGAAGGGAGAGAACGTGTCCACGCGAGAGGTGGAGGGCGTGCTGTCACTCGTGG
ACTTCCTGCAGGAGGTGAACGTCTACGGTGTGGCTGTGCCAGGGTGTGAGGGTAAGGTGGGCAT
GGCTGCCGTGCAGCTGGCCCCCGGCCAGACCTTCGACGGGCGGAGGCTATACGAGCACGTGCGC
AACTGGCTCCCTGCCTATGCTGCCCCCCATTTCATTCGTATCCAGGACACCTTGGAGACCACAA
GCACGTTCAAACTGGTGAAGTCCCGGCTGGTGCGCGAAGGCTTCAACGTGGGCGTTGTTGCCGA
CCCCCTGTTCGTGCTGGACCACCAGGCCCGCGCCTTCCAGCCCCTGACACCAGACATATACCAG
GCGGTGTGTGAGGGCACCTGGCGACTCTGACAGTCTAGTCAGCCCGCAGGACATCCAGAGGCGC
TGGGCCCAAGGCGGCAGGACCATCCCCCACGTGTATGGTCCCCAGGAGCCCCGGCCTGGCCTTA
TCCCCAGCTGCTCAGTGTGAGCCAACCCTGAGCCCTTGGCAGATGGAGAATAAACTCGGATGTG
CACACGGA

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Protein Sequences


Protein RefSeqs	XP_020953029	(Get FASTA)	NCBI Sequence Viewer
	XP_020953030	(Get FASTA)	NCBI Sequence Viewer
	XP_020953031	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000051828.2
	ENSSSCP00000054107
	ENSSSCP00000054107.3
	ENSSSCP00000063417
	ENSSSCP00000063417.2
	ENSSSCP00015026688.1
	ENSSSCP00015026724.1
	ENSSSCP00025018510.1
	ENSSSCP00035030801.1
	ENSSSCP00040034856.1
	ENSSSCP00055037286.1
	ENSSSCP00065020696.1
	ENSSSCP00065020698.1
	ENSSSCP00070050855.1
	ENSSSCP00070050856.1

RefSeq Acc Id:	XP_020953029 ⟸ XM_021097370
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0P166 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIQGRLAFLVLLLLLLRGLGWPAWPAAVALALRWLLGDSACCVLLGLAVLAWPWLGPWMPHWL SLAAAALTLALLPARPPPGLRWLPADLGYLFGTLRLGLNIQARLRRRPPDTFIDSFERRARAQP GRQILVWTGPGSQTVTFGELDARACRAAWVMKAELGDALGPHEREPTALLMLPSQTVPALGLWL GLAKLGCPVAWINPHGRGAPLVHAVLSSGARVLVVDPGLRENLEEILPKLQAENIRCFYLGHSS PTPGVGALGAALDAAPSDPVPADLRAEIKLRSPALFIYTSGTTGLPKPAILTYERVLQISGMLT LCGVTADDVVYSVLPLYHTMGLVLGVLSCLELGVTCVLAPKFSASRFWDDCRQHGVTVIQYVGE VLRYLCNTPQVSRQMRPPATPPCRFRDRSQVTSAGNPYKYLSGYKLPRPEDRSHSVRLAIGSGL RAEVWETFQQRFGPIQIWEAYGATEGNVGFVNYPGRCGAQGKSNCFLRMMSPFELVQFSMETEE PVRDKQGFCIPVGPGEPGLLLTQVLARQPFVGYRGPREQTEKKLVYNVRRPNDVYYNTGDVLAM DREGFLYFRDRLGDTFRWKGENVSTREVEGVLSLVDFLQEVNVYGVAVPGCEGKVGMAAVQLAP GQTFDGRRLYEHVRNWLPAYAAPHFIRIQDTLETTSTFKLVKSRLVREGFNVGVVADPLFVLDH QARAFQPLTPDIYQAVCEGTWRL hide sequence

RefSeq Acc Id:	XP_020953030 ⟸ XM_021097371
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0UNS2 (UniProtKB/TrEMBL), A0A8D0P166 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIQGRLAFLVLLLLLLRGLGWPAWPAAVALALRWLLGDSACCVLLGLAVLAWPWLGPWMPHWL SLAAAALTLALLPARPPPGLRWLPADLGYLFGTLRLGLNIQARLRRRPPDTFIDSFERRARAQP GRQILVWTGPGSQTVTFGELDARACRAAWVMKAELGDALGPHEREPTALLMLPSQTVPALGLWL GLAKLGCPVAWINPHGRGAPLVHAVLSSGARVLVVDPGLRENLEEILPKLQAENIRCFYLGHSS PTPGVGALGAALDAAPSDPVPADLRAEIKLRSPALFIYTSGTTGLPKPAILTYERVLQISGMLT LCGVTADDVVYSVLPLYHTMGLVLGVLSCLELGVTCVLAPKFSASRFWDDCRQHGVTVIQYVGE VLRYLCNTPQVSRQMRPPATPPCRFRDRSQRPEDRSHSVRLAIGSGLRAEVWETFQQRFGPIQI WEAYGATEGNVGFVNYPGRCGAQGKSNCFLRMMSPFELVQFSMETEEPVRDKQGFCIPVGPGEP GLLLTQVLARQPFVGYRGPREQTEKKLVYNVRRPNDVYYNTGDVLAMDREGFLYFRDRLGDTFR WKGENVSTREVEGVLSLVDFLQEVNVYGVAVPGCEGKVGMAAVQLAPGQTFDGRRLYEHVRNWL PAYAAPHFIRIQDTLETTSTFKLVKSRLVREGFNVGVVADPLFVLDHQARAFQPLTPDIYQAVC EGTWRL hide sequence

RefSeq Acc Id:	XP_020953031 ⟸ XM_021097372
- Peptide Label:	isoform X3
- UniProtKB:	A0A480QIA8 (UniProtKB/TrEMBL), A0A4X1W3I9 (UniProtKB/TrEMBL), A0A8D0P5R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIQGRLAFLVLLLLLLRGLGWPAWPAAVALALRWLLGDSACCVLLGLAVLAWPWLGPWMPHWL SLAAAALTLALLPARPPPGLRWLPADLGYLFGTLRLGLNIQARLRRRPPDTFIDSFERRARAQP GRQILVWTGPGSQTVTFGELDARACRAAWVMKAELGDALGPHEREPTALLMLPSQTVPALGLWL GLAKLGCPVAWINPHGRGAPLVHAVLSSGARVLVVDPGLRENLEEILPKLQAENIRCFYLGHSS PTPGVGALGAALDAAPSDPVPADLRAEIKLRSPALFIYTSGTTGLPKPAILTYERVLQISGMLT LCGVTADDVVYSVLPLYHTMGLVLGVLSCLELGVTCVLAPKFSASRFWDDCRQHGVTVIQYVGE VLRYLCNTPQRPEDRSHSVRLAIGSGLRAEVWETFQQRFGPIQIWEAYGATEGNVGFVNYPGRC GAQGKSNCFLRMMSPFELVQFSMETEEPVRDKQGFCIPVGPGEPGLLLTQVLARQPFVGYRGPR EQTEKKLVYNVRRPNDVYYNTGDVLAMDREGFLYFRDRLGDTFRWKGENVSTREVEGVLSLVDF LQEVNVYGVAVPGCEGKVGMAAVQLAPGQTFDGRRLYEHVRNWLPAYAAPHFIRIQDTLETTST FKLVKSRLVREGFNVGVVADPLFVLDHQARAFQPLTPDIYQAVCEGTWRL hide sequence

Ensembl Acc Id:

ENSSSCP00000063417 ⟸ ENSSSCT00000076198

Ensembl Acc Id:

ENSSSCP00000054107 ⟸ ENSSSCT00000046975

Ensembl Acc Id:

ENSSSCP00000051828 ⟸ ENSSSCT00000037862

Protein Domains

AMP-binding enzyme C-terminal AMP-dependent synthetase/ligase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000031449	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015049083	UniProtKB/TrEMBL
	ENSSSCG00025032048	UniProtKB/TrEMBL
	ENSSSCG00035056618	UniProtKB/TrEMBL
	ENSSSCG00040059069	UniProtKB/TrEMBL
	ENSSSCG00055023649	UniProtKB/TrEMBL
	ENSSSCG00065035213	UniProtKB/TrEMBL
	ENSSSCG00070029697	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000037862.3	UniProtKB/TrEMBL
	ENSSSCT00000046975	ENTREZGENE
	ENSSSCT00000046975.3	UniProtKB/TrEMBL
	ENSSSCT00000076198	ENTREZGENE
	ENSSSCT00000076198.2	UniProtKB/TrEMBL
	ENSSSCT00015066570.1	UniProtKB/TrEMBL
	ENSSSCT00015066656.1	UniProtKB/TrEMBL
	ENSSSCT00025043546.1	UniProtKB/TrEMBL
	ENSSSCT00035075625.1	UniProtKB/TrEMBL
	ENSSSCT00040080492.1	UniProtKB/TrEMBL
	ENSSSCT00055046762.1	UniProtKB/TrEMBL
	ENSSSCT00065048014.1	UniProtKB/TrEMBL
	ENSSSCT00065048018.1	UniProtKB/TrEMBL
	ENSSSCT00070059695.1	UniProtKB/TrEMBL
	ENSSSCT00070059696.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.300.30	UniProtKB/TrEMBL
	3.40.50.12780	UniProtKB/TrEMBL
InterPro	AMP-bd_C	UniProtKB/TrEMBL
	AMP-bd_C_sf	UniProtKB/TrEMBL
	AMP-binding_CS	UniProtKB/TrEMBL
	AMP-dep_Synth/Lig	UniProtKB/TrEMBL
	AMP-dep_Synthh-like_sf	UniProtKB/TrEMBL
NCBI Gene	SLC27A5	ENTREZGENE
PANTHER	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	UniProtKB/TrEMBL
	PTHR43107:SF4	UniProtKB/TrEMBL
Pfam	AMP-binding	UniProtKB/TrEMBL
	AMP-binding_C	UniProtKB/TrEMBL
PROSITE	AMP_BINDING	UniProtKB/TrEMBL
Superfamily-SCOP	Acetyl-CoA synthetase-like	UniProtKB/TrEMBL
UniProt	A0A287B6U1_PIG	UniProtKB/TrEMBL
	A0A287BDD8_PIG	UniProtKB/TrEMBL
	A0A480QIA8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W3I9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W9G4_PIG	UniProtKB/TrEMBL
	A0A5G2QFB4_PIG	UniProtKB/TrEMBL
	A0A8D0P166	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0P5R6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UNS2	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93039	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB