SLC27A5 (solute carrier family 27 member 5) - Rat Genome Database

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Gene: SLC27A5 (solute carrier family 27 member 5) Canis lupus familiaris
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Symbol: SLC27A5
Name: solute carrier family 27 member 5
RGD ID: 12179013
Description: ENCODES a protein that exhibits cholate-CoA ligase activity (ortholog); long-chain fatty acid transporter activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN bile acid metabolic process (ortholog); establishment of localization in cell (ortholog); fatty acid transport (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; FOUND IN basal plasma membrane (ortholog); endoplasmic reticulum (ortholog); integral component of endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bile acyl-CoA synthetase; LOC608675; solute carrier family 27 (fatty acid transporter), member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,435,140 - 99,438,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,833,542 - 99,842,039 (+)NCBI
ROS_Cfam_1.01100,048,410 - 100,056,905 (+)NCBI
ROS_Cfam_1.0 Ensembl1100,041,887 - 100,056,901 (+)Ensembl
UMICH_Zoey_3.1199,693,751 - 99,702,249 (+)NCBI
UNSW_CanFamBas_1.0199,406,581 - 99,415,077 (+)NCBI
UU_Cfam_GSD_1.01100,161,220 - 100,169,717 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC27A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,435,140 - 99,438,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,833,542 - 99,842,039 (+)NCBI
ROS_Cfam_1.01100,048,410 - 100,056,905 (+)NCBI
ROS_Cfam_1.0 Ensembl1100,041,887 - 100,056,901 (+)Ensembl
UMICH_Zoey_3.1199,693,751 - 99,702,249 (+)NCBI
UNSW_CanFamBas_1.0199,406,581 - 99,415,077 (+)NCBI
UU_Cfam_GSD_1.01100,161,220 - 100,169,717 (+)NCBI
SLC27A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,498,333 - 58,511,992 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1958,479,512 - 58,512,413 (-)EnsemblGRCh38hg38GRCh38
GRCh371959,009,700 - 59,023,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,701,517 - 63,715,161 (-)NCBINCBI36hg18NCBI36
Build 341963,701,517 - 63,715,157NCBI
Celera1956,053,816 - 56,067,542 (-)NCBI
Cytogenetic Map19q13.43NCBI
HuRef1955,319,377 - 55,333,864 (-)NCBIHuRef
CHM1_11959,003,732 - 59,017,394 (-)NCBICHM1_1
T2T-CHM13v2.01961,594,402 - 61,607,985 (-)NCBI
Slc27a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,722,273 - 12,732,119 (-)NCBIGRCm39mm39
GRCm39 Ensembl712,722,273 - 12,732,119 (-)Ensembl
GRCm38712,988,346 - 12,998,192 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,988,346 - 12,998,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,573,695 - 13,583,541 (-)NCBIGRCm37mm9NCBIm37
MGSCv36711,888,532 - 11,898,329 (-)NCBImm8
Celera710,613,981 - 10,626,137 (-)NCBICelera
Cytogenetic Map7A1NCBI
Slc27a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2173,616,556 - 73,627,149 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl173,616,564 - 73,627,172 (-)Ensembl
Rnor_6.0165,576,599 - 65,587,192 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,576,535 - 65,587,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,387,832 - 66,398,425 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,924,630 - 72,935,223 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1173,002,740 - 73,013,332 (+)NCBI
Celera160,212,177 - 60,222,770 (+)NCBICelera
Cytogenetic Map1q12NCBI
Slc27a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,112,117 - 1,121,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,112,387 - 1,121,500 (-)NCBIChiLan1.0ChiLan1.0
SLC27A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,329,567 - 64,342,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,329,567 - 64,342,630 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,507,455 - 55,520,448 (-)NCBIMhudiblu_PPA_v0panPan3
Slc27a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,019,774 - 218,029,145 (+)NCBI
SpeTri2.0NW_00493706290,217 - 98,562 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,065,830 - 63,075,202 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,068,880 - 63,075,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC27A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,782,713 - 50,793,816 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl650,781,544 - 50,792,515 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660454,088,423 - 4,092,128 (-)NCBIVero_WHO_p1.0
Slc27a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483284,552 - 92,556 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462483284,456 - 92,706 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038466731   ⟹   XP_038322659
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1199,693,751 - 99,702,249 (+)NCBI
RefSeq Acc Id: XM_038527464   ⟹   XP_038383392
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01100,161,220 - 100,169,717 (+)NCBI
RefSeq Acc Id: XM_038591751   ⟹   XP_038447679
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0199,406,581 - 99,415,077 (+)NCBI
RefSeq Acc Id: XM_038616371   ⟹   XP_038472299
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha199,833,542 - 99,842,039 (+)NCBI
RefSeq Acc Id: XM_038655556   ⟹   XP_038511484
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01100,048,410 - 100,056,905 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_038322659   ⟸   XM_038466731
RefSeq Acc Id: XP_038447679   ⟸   XM_038591751
RefSeq Acc Id: XP_038511484   ⟸   XM_038655556
RefSeq Acc Id: XP_038472299   ⟸   XM_038616371
RefSeq Acc Id: XP_038383392   ⟸   XM_038527464


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845000308 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00845000324.1 UniProtKB/TrEMBL
  ENSCAFP00845000330.1 UniProtKB/TrEMBL
  ENSCAFP00845000341.1 UniProtKB/TrEMBL
  ENSCAFP00845000349.1 UniProtKB/TrEMBL
  ENSCAFP00845000360.1 UniProtKB/TrEMBL
  ENSCAFP00845000368.1 UniProtKB/TrEMBL
  ENSCAFP00845000376.1 UniProtKB/TrEMBL
  ENSCAFP00845000383.1 UniProtKB/TrEMBL
  ENSCAFP00845000387 ENTREZGENE
  ENSCAFP00845000387.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845000474.1 UniProtKB/TrEMBL
  ENSCAFT00845000484.1 UniProtKB/TrEMBL
  ENSCAFT00845000498.1 UniProtKB/TrEMBL
  ENSCAFT00845000509.1 UniProtKB/TrEMBL
  ENSCAFT00845000525.1 UniProtKB/TrEMBL
  ENSCAFT00845000536.1 UniProtKB/TrEMBL
  ENSCAFT00845000549.1 UniProtKB/TrEMBL
  ENSCAFT00845000561.1 UniProtKB/TrEMBL
  ENSCAFT00845000567 ENTREZGENE
  ENSCAFT00845000567.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.30.710.10 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  FATP5 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC608675 ENTREZGENE
PANTHER PTHR43107:SF4 UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I3MAG2_CANLF UniProtKB/TrEMBL
  A0A8I3MAI7_CANLF UniProtKB/TrEMBL
  A0A8I3MAJ6_CANLF UniProtKB/TrEMBL
  A0A8I3MAR5_CANLF UniProtKB/TrEMBL
  A0A8I3MF14_CANLF UniProtKB/TrEMBL
  A0A8I3MFW7_CANLF UniProtKB/TrEMBL
  A0A8I3MV14_CANLF UniProtKB/TrEMBL
  A0A8I3RP23_CANLF UniProtKB/TrEMBL
  A0A8I3RQQ8_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 SLC27A5  solute carrier family 27 member 5  SLC27A5  solute carrier family 27 member 5  Data Merged 737654 PROVISIONAL
2021-01-12 SLC27A5  solute carrier family 27 member 5  LOC608675  bile acyl-CoA synthetase  Symbol and/or name change 5135510 APPROVED