SLC27A5 (solute carrier family 27 member 5) - Rat Genome Database

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Gene: SLC27A5 (solute carrier family 27 member 5) Pan paniscus
Analyze
Symbol: SLC27A5
Name: solute carrier family 27 member 5
RGD ID: 11998257
Description: ENCODES a protein that exhibits cholate-CoA ligase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN bile acid metabolic process (ortholog); fatty acid transport (ortholog); ketone body biosynthetic process (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; FOUND IN intracellular membrane-bounded organelle (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: bile acyl-CoA synthetase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,329,567 - 64,342,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,329,567 - 64,342,630 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,507,455 - 55,520,448 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC27A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,329,567 - 64,342,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,329,567 - 64,342,630 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,507,455 - 55,520,448 (-)NCBIMhudiblu_PPA_v0panPan3
SLC27A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1958,479,512 - 58,512,413 (-)EnsemblGRCh38hg38GRCh38
GRCh381958,498,333 - 58,512,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371959,009,700 - 59,023,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,701,517 - 63,715,161 (-)NCBINCBI36hg18NCBI36
Build 341963,701,517 - 63,715,157NCBI
Celera1956,053,816 - 56,067,542 (-)NCBI
Cytogenetic Map19q13.43NCBI
HuRef1955,319,377 - 55,333,864 (-)NCBIHuRef
CHM1_11959,003,732 - 59,017,394 (-)NCBICHM1_1
Slc27a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,722,273 - 12,732,119 (-)NCBIGRCm39mm39
GRCm39 Ensembl712,722,273 - 12,732,119 (-)Ensembl
GRCm38712,988,346 - 12,998,192 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,988,346 - 12,998,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,573,695 - 13,583,541 (-)NCBIGRCm37mm9NCBIm37
MGSCv36711,888,532 - 11,898,329 (-)NCBImm8
Celera710,613,981 - 10,626,137 (-)NCBICelera
Cytogenetic Map7A1NCBI
Slc27a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2173,616,556 - 73,627,149 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl173,616,564 - 73,627,172 (-)Ensembl
Rnor_6.0165,576,599 - 65,587,192 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,576,535 - 65,587,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,387,832 - 66,398,425 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,924,630 - 72,935,223 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1173,002,740 - 73,013,332 (+)NCBI
Celera160,212,177 - 60,222,770 (+)NCBICelera
Cytogenetic Map1q12NCBI
Slc27a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,112,117 - 1,121,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,112,387 - 1,121,500 (-)NCBIChiLan1.0ChiLan1.0
SLC27A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,435,140 - 99,438,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,833,542 - 99,842,039 (+)NCBI
ROS_Cfam_1.01100,048,410 - 100,056,905 (+)NCBI
ROS_Cfam_1.0 Ensembl1100,041,887 - 100,056,901 (+)Ensembl
UMICH_Zoey_3.1199,693,751 - 99,702,249 (+)NCBI
UNSW_CanFamBas_1.0199,406,581 - 99,415,077 (+)NCBI
UU_Cfam_GSD_1.01100,161,220 - 100,169,717 (+)NCBI
Slc27a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,019,774 - 218,029,145 (+)NCBI
SpeTri2.0NW_00493706290,217 - 98,562 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,065,829 - 63,075,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,068,880 - 63,075,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC27A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,782,713 - 50,793,816 (-)NCBIChlSab1.1chlSab2
ChlSab1.1650,782,713 - 50,793,816 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl650,781,544 - 50,792,515 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660454,088,423 - 4,092,128 (-)NCBIVero_WHO_p1.0
Slc27a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483284,456 - 92,706 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000058904   ⟹   ENSPPAP00000036014
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1964,329,567 - 64,342,630 (-)Ensembl
RefSeq Acc Id: XM_003816626   ⟹   XP_003816674
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11964,329,567 - 64,342,630 (-)NCBI
Mhudiblu_PPA_v01955,507,455 - 55,520,448 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003816627   ⟹   XP_003816675
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11964,329,567 - 64,342,630 (-)NCBI
Mhudiblu_PPA_v01955,507,455 - 55,520,448 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003816674 (Get FASTA)   NCBI Sequence Viewer  
  XP_003816675 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003816674   ⟸   XM_003816626
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003816675   ⟸   XM_003816627
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000036014   ⟸   ENSPPAT00000058904
Protein Domains
AMP-binding   AMP-binding_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040789 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000036014 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058904 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
  FATP5 UniProtKB/TrEMBL
KEGG Report pps:100973518 UniProtKB/TrEMBL
NCBI Gene SLC27A5 ENTREZGENE
PANTHER PTHR43107:SF4 UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
UniProt A0A2R9C256_PANPA UniProtKB/TrEMBL