TCF4 (transcription factor 4) - Rat Genome Database

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Gene: TCF4 (transcription factor 4) Sus scrofa
Analyze
Symbol: TCF4
Name: transcription factor 4
RGD ID: 14125695
Description: ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN endothelial cell activation (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Corneal Dystrophy, Fuchs Endothelial, 3 (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN transcription regulator complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1104,719,151 - 105,079,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11104,718,809 - 105,079,919 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21115,117,555 - 115,353,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1104,719,151 - 105,079,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11104,718,809 - 105,079,919 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21115,117,555 - 115,353,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381855,222,185 - 55,635,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1855,222,185 - 55,664,787 (-)EnsemblGRCh38hg38GRCh38
GRCh371852,889,416 - 53,303,188 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361851,040,560 - 51,406,858 (-)NCBINCBI36Build 36hg18NCBI36
Build 341851,045,966 - 51,406,441NCBI
Celera1849,606,934 - 49,973,119 (-)NCBICelera
Cytogenetic Map18q21.2NCBI
HuRef1849,599,225 - 50,013,477 (-)NCBIHuRef
CHM1_11852,884,825 - 53,298,977 (-)NCBICHM1_1
T2T-CHM13v2.01855,425,274 - 55,839,077 (-)NCBIT2T-CHM13v2.0
Tcf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391869,476,500 - 69,821,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1869,476,427 - 69,822,150 (+)EnsemblGRCm39 Ensembl
GRCm381869,343,429 - 69,687,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1869,343,356 - 69,689,079 (+)EnsemblGRCm38mm10GRCm38
MGSCv371869,504,146 - 69,847,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361869,469,890 - 69,809,713 (+)NCBIMGSCv36mm8
Celera1870,630,746 - 70,974,890 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1843.23NCBI
Tcf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81865,216,840 - 65,563,186 (+)NCBIGRCr8
mRatBN7.21862,941,739 - 63,288,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1862,943,782 - 63,284,425 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1865,021,713 - 65,360,258 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01865,713,660 - 66,051,972 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01863,570,321 - 63,908,645 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01865,285,320 - 65,507,983 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1865,155,685 - 65,507,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01864,471,373 - 64,694,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41866,135,863 - 66,359,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11866,209,063 - 66,433,179 (+)NCBI
Celera1861,145,273 - 61,368,542 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Tcf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540239,735,600 - 40,066,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540239,735,596 - 40,066,151 (-)NCBIChiLan1.0ChiLan1.0
TCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21772,749,860 - 73,162,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11858,441,348 - 58,855,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01848,603,069 - 48,969,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11851,938,357 - 52,351,679 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1851,938,357 - 52,352,030 (-)Ensemblpanpan1.1panPan2
TCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1120,060,788 - 20,417,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl120,060,788 - 20,417,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,044,957 - 21,401,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0119,945,098 - 20,307,635 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl119,945,046 - 20,305,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1120,000,058 - 20,356,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0119,895,148 - 20,251,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0120,166,172 - 20,523,442 (+)NCBIUU_Cfam_GSD_1.0
Tcf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494433,171,849 - 33,525,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364978,410,860 - 8,764,296 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364978,410,882 - 8,765,678 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11824,116,595 - 24,483,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1824,116,547 - 24,478,228 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660601,054,633 - 1,421,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624792686,774 - 1,027,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624792686,360 - 1,030,199 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCF4
5537 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021093431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021093592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK390274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU462835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU694100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01092294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000005009   ⟹   ENSSSCP00000004889
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,308 - 104,816,498 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000036325   ⟹   ENSSSCP00000030707
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,151 - 105,078,587 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000036505   ⟹   ENSSSCP00000030136
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,308 - 105,078,238 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000042622   ⟹   ENSSSCP00000036879
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,329 - 105,079,885 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053584   ⟹   ENSSSCP00000038344
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,330 - 104,816,930 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000061115   ⟹   ENSSSCP00000038651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,337 - 105,078,225 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000065036   ⟹   ENSSSCP00000031205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1104,719,322 - 105,079,919 (-)Ensembl
RefSeq Acc Id: XM_021093431   ⟹   XP_020949090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093435   ⟹   XP_020949094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,079,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093439   ⟹   XP_020949098
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093441   ⟹   XP_020949100
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093443   ⟹   XP_020949102
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093445   ⟹   XP_020949104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093448   ⟹   XP_020949107
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,075,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093452   ⟹   XP_020949111
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093460   ⟹   XP_020949119
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093465   ⟹   XP_020949124
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093476   ⟹   XP_020949135
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093481   ⟹   XP_020949140
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093484   ⟹   XP_020949143
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093491   ⟹   XP_020949150
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,079,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093496   ⟹   XP_020949155
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,076,016 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093499   ⟹   XP_020949158
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,079,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093502   ⟹   XP_020949161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,076,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093505   ⟹   XP_020949164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093513   ⟹   XP_020949172
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,079,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093515   ⟹   XP_020949174
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,076,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093524   ⟹   XP_020949183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,078,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093529   ⟹   XP_020949188
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,915,409 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093539   ⟹   XP_020949198
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,897,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093544   ⟹   XP_020949203
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,895,251 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093547   ⟹   XP_020949206
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,894,748 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093550   ⟹   XP_020949209
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,895,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093553   ⟹   XP_020949212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,915,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093556   ⟹   XP_020949215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,897,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093561   ⟹   XP_020949220
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,895,251 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093566   ⟹   XP_020949225
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093572   ⟹   XP_020949231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093575   ⟹   XP_020949234
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093578   ⟹   XP_020949237
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093580   ⟹   XP_020949239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,945 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093583   ⟹   XP_020949242
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093587   ⟹   XP_020949246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 105,079,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093592   ⟹   XP_020949251
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11104,718,809 - 104,816,556 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020949090 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949094 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949098 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949100 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949102 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949104 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949107 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949111 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949119 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949124 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949135 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949140 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949143 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949150 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949155 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949158 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949161 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949164 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949172 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949174 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949183 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949188 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949198 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949203 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949206 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949209 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949212 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949215 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949220 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949225 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949231 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949234 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949237 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949239 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949242 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949246 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949251 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000030707
  ENSSSCP00000030707.3
  ENSSSCP00000031205
  ENSSSCP00000031205.3
  ENSSSCP00000036879
  ENSSSCP00000036879.2
  ENSSSCP00000038344
  ENSSSCP00000038344.2
  ENSSSCP00000038651
  ENSSSCP00000038651.3
  ENSSSCP00015027471.1
  ENSSSCP00015027575.1
  ENSSSCP00015027702.1
  ENSSSCP00025045511.1
  ENSSSCP00025045588.1
  ENSSSCP00025045644.1
  ENSSSCP00030017536.1
  ENSSSCP00030017546.1
  ENSSSCP00030017550.1
  ENSSSCP00035045818.1
  ENSSSCP00035045978.1
  ENSSSCP00040048800.1
  ENSSSCP00040048804.1
  ENSSSCP00045028130.1
  ENSSSCP00045028280.1
  ENSSSCP00045028377.1
  ENSSSCP00050001330.1
  ENSSSCP00050001372.1
  ENSSSCP00055048621.1
  ENSSSCP00055048629.1
  ENSSSCP00055048634.1
  ENSSSCP00060028314.1
  ENSSSCP00060028318.1
  ENSSSCP00060028320.1
  ENSSSCP00065007388.1
  ENSSSCP00070026611.1
  ENSSSCP00070026632.1
  ENSSSCP00070026644.1
  ENSSSCP00070026651.1
  ENSSSCP00070026658.1
  ENSSSCP00070026687.1
  ENSSSCP00070026700.1
  ENSSSCP00070026703.1
  ENSSSCP00070026719.1
RefSeq Acc Id: XP_020949150   ⟸   XM_021093491
- Peptide Label: isoform X11
- UniProtKB: A0A4X1UFB6 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949158   ⟸   XM_021093499
- Peptide Label: isoform X12
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949246   ⟸   XM_021093587
- Peptide Label: isoform X23
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949094   ⟸   XM_021093435
- Peptide Label: isoform X1
- UniProtKB: A0A287A3V5 (UniProtKB/TrEMBL),   A0A480T5E4 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949172   ⟸   XM_021093513
- Peptide Label: isoform X8
- UniProtKB: A0A4X1UEV2 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL),   A0A8D0HZ10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949098   ⟸   XM_021093439
- Peptide Label: isoform X1
- UniProtKB: A0A287A3V5 (UniProtKB/TrEMBL),   A0A480T5E4 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949143   ⟸   XM_021093484
- Peptide Label: isoform X11
- UniProtKB: A0A4X1UFB6 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949135   ⟸   XM_021093476
- Peptide Label: isoform X9
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949111   ⟸   XM_021093452
- Peptide Label: isoform X6
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949100   ⟸   XM_021093441
- Peptide Label: isoform X2
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949140   ⟸   XM_021093481
- Peptide Label: isoform X10
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949119   ⟸   XM_021093460
- Peptide Label: isoform X7
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949102   ⟸   XM_021093443
- Peptide Label: isoform X3
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949124   ⟸   XM_021093465
- Peptide Label: isoform X8
- UniProtKB: A0A4X1UEV2 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL),   A0A8D0HZ10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949104   ⟸   XM_021093445
- Peptide Label: isoform X4
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949090   ⟸   XM_021093431
- Peptide Label: isoform X1
- UniProtKB: A0A287A3V5 (UniProtKB/TrEMBL),   A0A480T5E4 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949164   ⟸   XM_021093505
- Peptide Label: isoform X12
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949183   ⟸   XM_021093524
- Peptide Label: isoform X14
- UniProtKB: A0A4X1UE64 (UniProtKB/TrEMBL),   A0A8D0HLM3 (UniProtKB/TrEMBL),   A0A8D0HT09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949161   ⟸   XM_021093502
- Peptide Label: isoform X12
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949155   ⟸   XM_021093496
- Peptide Label: isoform X12
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949174   ⟸   XM_021093515
- Peptide Label: isoform X13
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949107   ⟸   XM_021093448
- Peptide Label: isoform X5
- UniProtKB: A0A8D0HLM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949188   ⟸   XM_021093529
- Peptide Label: isoform X15
- UniProtKB: A0A8D0WAG3 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D0P7V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949212   ⟸   XM_021093553
- Peptide Label: isoform X16
- UniProtKB: A0A4X1UEA2 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A4X1UCJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949198   ⟸   XM_021093539
- Peptide Label: isoform X15
- UniProtKB: A0A8D0WAG3 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D0P7V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949215   ⟸   XM_021093556
- Peptide Label: isoform X16
- UniProtKB: A0A4X1UEA2 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A4X1UCJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949220   ⟸   XM_021093561
- Peptide Label: isoform X16
- UniProtKB: A0A4X1UEA2 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A4X1UCJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949203   ⟸   XM_021093544
- Peptide Label: isoform X15
- UniProtKB: A0A8D0WAG3 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D0P7V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949209   ⟸   XM_021093550
- Peptide Label: isoform X15
- UniProtKB: A0A8D0WAG3 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D0P7V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949206   ⟸   XM_021093547
- Peptide Label: isoform X15
- UniProtKB: A0A8D0WAG3 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D0P7V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949239   ⟸   XM_021093580
- Peptide Label: isoform X21
- UniProtKB: A0A480S5U0 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949237   ⟸   XM_021093578
- Peptide Label: isoform X20
- UniProtKB: A0A480S4H0 (UniProtKB/TrEMBL),   A0A4X1UEC8 (UniProtKB/TrEMBL),   A0A287A3L5 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL),   A0A8D1VS53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949242   ⟸   XM_021093583
- Peptide Label: isoform X22
- UniProtKB: A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949251   ⟸   XM_021093592
- Peptide Label: isoform X24
- UniProtKB: A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949231   ⟸   XM_021093572
- Peptide Label: isoform X18
- UniProtKB: A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949234   ⟸   XM_021093575
- Peptide Label: isoform X19
- UniProtKB: A0A480T8H7 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949225   ⟸   XM_021093566
- Peptide Label: isoform X17
- UniProtKB: F1S1Z1 (UniProtKB/TrEMBL),   A0A8D1XQG6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000004889   ⟸   ENSSSCT00000005009
Ensembl Acc Id: ENSSSCP00000031205   ⟸   ENSSSCT00000065036
Ensembl Acc Id: ENSSSCP00000038651   ⟸   ENSSSCT00000061115
Ensembl Acc Id: ENSSSCP00000030707   ⟸   ENSSSCT00000036325
Ensembl Acc Id: ENSSSCP00000036879   ⟸   ENSSSCT00000042622
Ensembl Acc Id: ENSSSCP00000030136   ⟸   ENSSSCT00000036505
Ensembl Acc Id: ENSSSCP00000038344   ⟸   ENSSSCT00000053584
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004535 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015048378 UniProtKB/TrEMBL
  ENSSSCG00025073929 UniProtKB/TrEMBL
  ENSSSCG00030027128 UniProtKB/TrEMBL
  ENSSSCG00035076088 UniProtKB/TrEMBL
  ENSSSCG00040076329 UniProtKB/TrEMBL
  ENSSSCG00045023033 UniProtKB/TrEMBL
  ENSSSCG00050002461 UniProtKB/TrEMBL
  ENSSSCG00055030397 UniProtKB/TrEMBL
  ENSSSCG00060048578 UniProtKB/TrEMBL
  ENSSSCG00065013572 UniProtKB/TrEMBL
  ENSSSCG00070015380 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036325 ENTREZGENE
  ENSSSCT00000036325.4 UniProtKB/TrEMBL
  ENSSSCT00000042622 ENTREZGENE
  ENSSSCT00000042622.3 UniProtKB/TrEMBL
  ENSSSCT00000053584 ENTREZGENE
  ENSSSCT00000053584.2 UniProtKB/TrEMBL
  ENSSSCT00000061115 ENTREZGENE
  ENSSSCT00000061115.3 UniProtKB/TrEMBL
  ENSSSCT00000065036 ENTREZGENE
  ENSSSCT00000065036.3 UniProtKB/TrEMBL
  ENSSSCT00015068579.1 UniProtKB/TrEMBL
  ENSSSCT00015068764.1 UniProtKB/TrEMBL
  ENSSSCT00015069147.1 UniProtKB/TrEMBL
  ENSSSCT00025102768.1 UniProtKB/TrEMBL
  ENSSSCT00025102941.1 UniProtKB/TrEMBL
  ENSSSCT00025103043.1 UniProtKB/TrEMBL
  ENSSSCT00030038142.1 UniProtKB/TrEMBL
  ENSSSCT00030038159.1 UniProtKB/TrEMBL
  ENSSSCT00030038166.1 UniProtKB/TrEMBL
  ENSSSCT00035106376.1 UniProtKB/TrEMBL
  ENSSSCT00035106657.1 UniProtKB/TrEMBL
  ENSSSCT00040106267.1 UniProtKB/TrEMBL
  ENSSSCT00040106271.1 UniProtKB/TrEMBL
  ENSSSCT00045040404.1 UniProtKB/TrEMBL
  ENSSSCT00045040647.1 UniProtKB/TrEMBL
  ENSSSCT00045040831.1 UniProtKB/TrEMBL
  ENSSSCT00050003715.1 UniProtKB/TrEMBL
  ENSSSCT00050003791.1 UniProtKB/TrEMBL
  ENSSSCT00055060681.1 UniProtKB/TrEMBL
  ENSSSCT00055060691.1 UniProtKB/TrEMBL
  ENSSSCT00055060696.1 UniProtKB/TrEMBL
  ENSSSCT00060066114.1 UniProtKB/TrEMBL
  ENSSSCT00060066122.1 UniProtKB/TrEMBL
  ENSSSCT00060066129.1 UniProtKB/TrEMBL
  ENSSSCT00065018083.1 UniProtKB/TrEMBL
  ENSSSCT00070031918.1 UniProtKB/TrEMBL
  ENSSSCT00070031942.1 UniProtKB/TrEMBL
  ENSSSCT00070031955.1 UniProtKB/TrEMBL
  ENSSSCT00070031963.1 UniProtKB/TrEMBL
  ENSSSCT00070031970.1 UniProtKB/TrEMBL
  ENSSSCT00070032003.1 UniProtKB/TrEMBL
  ENSSSCT00070032021.1 UniProtKB/TrEMBL
  ENSSSCT00070032024.1 UniProtKB/TrEMBL
  ENSSSCT00070032041.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  NeuroDiff_E-box_TFs UniProtKB/TrEMBL
NCBI Gene TCF4 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 4 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A286ZI80_PIG UniProtKB/TrEMBL
  A0A286ZZI1_PIG UniProtKB/TrEMBL
  A0A287A3L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A3V5 ENTREZGENE
  A0A480S4H0 ENTREZGENE
  A0A480S5U0 ENTREZGENE, UniProtKB/TrEMBL
  A0A480T5E4 ENTREZGENE, UniProtKB/TrEMBL
  A0A480T8H7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UA54_PIG UniProtKB/TrEMBL
  A0A4X1UCJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UE64 ENTREZGENE
  A0A4X1UEA2 ENTREZGENE
  A0A4X1UEC8 ENTREZGENE
  A0A4X1UEV2 ENTREZGENE
  A0A4X1UFB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HLM3 ENTREZGENE
  A0A8D0HT09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HWS7_PIG UniProtKB/TrEMBL
  A0A8D0HZ10 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0P227_PIG UniProtKB/TrEMBL
  A0A8D0P7V4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WAG3 ENTREZGENE
  A0A8D1VS53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XQG6 ENTREZGENE, UniProtKB/TrEMBL
  F1S1Z1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287A3V5 UniProtKB/TrEMBL
  A0A480S4H0 UniProtKB/TrEMBL
  A0A4X1UEC8 UniProtKB/TrEMBL
  K7GS27 UniProtKB/TrEMBL
VGNC ID VGNC:93823 ENTREZGENE