Symbol:
SNX21
Name:
sorting nexin family member 21
RGD ID:
14097905
Description:
ENCODES a protein that exhibits lipid binding (inferred); phosphatidylinositol binding (inferred); phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN protein transport (inferred); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN early endosome membrane (inferred); endosome (inferred); membrane (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
sorting nexin-21
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 17 48,033,717 - 48,040,522 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 17 48,033,608 - 48,039,633 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 17 53,679,667 - 53,685,699 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
SNX21 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 17 48,033,717 - 48,040,522 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 17 48,033,608 - 48,039,633 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 17 53,679,667 - 53,685,699 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SNX21 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 20 45,833,799 - 45,843,276 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 20 45,833,799 - 45,843,276 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 20 44,462,438 - 44,471,915 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 20 43,895,877 - 43,905,321 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 20 43,895,876 - 43,905,321 NCBI Celera 20 41,172,965 - 41,182,409 (+) NCBI Celera Cytogenetic Map 20 q13.12 NCBI HuRef 20 41,204,229 - 41,213,683 (+) NCBI HuRef CHM1_1 20 44,365,605 - 44,375,046 (+) NCBI CHM1_1 T2T-CHM13v2.0 20 47,570,293 - 47,579,777 (+) NCBI T2T-CHM13v2.0
Snx21 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 164,627,535 - 164,635,730 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 164,627,743 - 164,635,736 (+) Ensembl GRCm39 Ensembl GRCm38 2 164,785,759 - 164,793,810 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 164,785,823 - 164,793,816 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 164,611,521 - 164,618,270 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 164,477,222 - 164,478,837 (+) NCBI MGSCv36 mm8 Celera 2 170,723,428 - 170,730,177 (+) NCBI Celera Cytogenetic Map 2 H3 NCBI cM Map 2 85.27 NCBI
Snx21 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 173,941,634 - 173,951,571 (+) NCBI GRCr8 mRatBN7.2 3 153,522,474 - 153,532,235 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 153,522,486 - 153,532,221 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 157,331,129 - 157,340,710 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 165,830,099 - 165,839,680 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 163,573,876 - 163,583,453 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 161,252,634 - 161,261,880 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 161,252,723 - 161,264,818 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 167,438,430 - 167,446,285 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 155,815,636 - 155,829,250 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 3 152,130,304 - 152,139,862 (+) NCBI Celera Cytogenetic Map 3 q42 NCBI
Snx21 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955445 11,454,802 - 11,462,625 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955445 11,454,802 - 11,462,625 (-) NCBI ChiLan1.0 ChiLan1.0
SNX21 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 21 51,575,496 - 51,584,015 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 20 51,568,737 - 51,576,863 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 20 42,173,092 - 42,181,890 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 20 43,260,483 - 43,269,406 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 20 43,260,483 - 43,269,406 (+) Ensembl panpan1.1 panPan2
SNX21 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 24 33,143,459 - 33,149,418 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 24 33,143,837 - 33,149,510 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 24 32,670,500 - 32,676,444 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 24 33,853,757 - 33,859,704 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 24 33,854,118 - 33,859,793 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 24 33,112,309 - 33,118,257 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 24 33,227,390 - 33,233,338 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 24 33,766,518 - 33,772,465 (+) NCBI UU_Cfam_GSD_1.0
Snx21 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024408640 191,726,092 - 191,732,519 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936514 7,180,851 - 7,186,146 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936514 7,180,533 - 7,188,201 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SNX21 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 2 18,043,937 - 18,052,497 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 2 18,044,322 - 18,052,034 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666050 66,682,340 - 66,692,286 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Snx21 (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
10
4
23
3
2
5
14
12
23
3
6
3
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSSSCT00000008128 ⟹ ENSSSCP00000007912
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 17 48,033,717 - 48,040,271 (+) Ensembl
Ensembl Acc Id:
ENSSSCT00000083876 ⟹ ENSSSCP00000070275
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 17 48,033,858 - 48,040,522 (+) Ensembl
RefSeq Acc Id:
XM_013985408 ⟹ XP_013840862
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 17 48,033,608 - 48,039,633 (+) NCBI
Sequence:
GGCGCTCTGAGCGGCCCGAGCCCGGCGGAGCCGGGCTGGCCTCGGTTGGCCTTGGGCAGCCACCCGGGGTTGCAGGGGGACCCAGGGGAGCGGGACACCCCACAGTGCACCGCGGGGCGCAGGAGGCA GAGACTCGCAAGGGGGCGAAACAGGCGCCGGGTGAGTCGCGAGACCCCCACGGGCAGGGGCGGGGCCTCCGCGGCGCCCCTCCCTCCCCGATCTGGGCCCCGCCCCCCTCCTCCCTGCGCCGGGGCCG GGGTCAGCCTCCCGGCCCGGGACCCAGAGTCGCGCGCTCCCCCCGGGGTGCCATGGCCTCGAGGCTCCTGCACCGGCTGCGGCACGCCCTGGCCGGCGACGGCCCCGGGGAGGGGGCGGCCGGCCCCG AGGCCGAGCAGTTCCCTGAGAGCTCGGAACTGGAGGACGACGACGCTGAGGGCCTGTCGTCCCGCCTCAGCGGCACCCTGAGCTTCACCAGCGCCGAGGACGACGAGGACGAGGACGAAGAGGACGAC GAGGAGGCCGGCTCCGACCCGCTGGCCTCCGGGGACCGGGCGGCGGGAGAAGACACAGGCCCATCCTGTTCTCATGCAGACCGGAGTCCCCCACCTGATGGGCAGCGAGGCAGTCAGCTCCTGACACG GCAGTTGCAAGATTTTTGGAAGAAGTCCCGGAACACCCTGGTACCCCAGCGGCTCCTCTTTGAGGTGACCAGCGCCAACGTGGTCAAAGACCCACCCTCCAAGTACGTGCTCTACACCCTCGCCGTGA TGGGCCCAGGGCCGCCAGATCGCCAGCCAGCCCAGATCTCCCGCCGCTACTCGGACTTTGAGCGGTTGCACCGAAACCTGCAGCGGCAGTTCCGGGGCCCCATGGCTGCCATCTCCTTCCCCCGAAAG CGCCTGCGCCGGAATTTTACTGCAGAGACCATCGCCCGCCGCAGCCGGGCTTTCGAGCAGTTTCTGGGCCACCTCCAGGCAGTGCCTGAGCTGCGCCAAGCCCCAGACCTGCAGGACTTCTTCGTGCT GCCTGAGCTGCGGCGGGCGCAGAGCCTCACCTGCACTGGCCTCTACCGAGAGGCTCTGGCACTCTGGGCCAACGCTTGGCAGCTGCAGGCCCAGCTGGGCATCCCCTCGGGCCCAGACCGCCCTCTGC TGACCCTGGCGGGGCTGGCCGTGTGCCACCAGGAGCTAGAGGACCCTGGGGAGGCCCGGGCATGCTGTGAGAAGGCCCTACAGCTGCTGGGGAACAAGAACCCTCACCCCTTGCTGGCACCCTTTCTG GAGGCCCACGTGCGGCTCTCCTGGCGCCTGGGCCTGGACAAACGCCAGTCGGAGGCCCGGCTGCAGGCCCTGCAGGAGGCAGGCCTGACCCCCACGCCACCCCCAAGTCTCAAAGAATTACTCATCAA GGAGGTACTGGACTAGCCTGGCCCAGACCTGAGGCCACTGCAGGGAGAGGCACTGCCCCAGGGTGAGGGGTGGGATGAGGGTGGATGAGGACATGGACAGTAGTTGAGAGGCTACCAGGGGTGCTGGG AACCCCCAGAAGTTGTGCAAAGAATTTGAAGCAGACTGAGGAAACGCGCTGCTTCTGTTGAGAGCTGGGCTCAGGACAAGCTTTGGCTGGGATGGTGCAGGGAGAGAGTCTGATGCCGCTGCCCCAGG TTGGGGTCAACGTTCCCTTTCCCTTGGGCCTCCAAACCCATAGGCAGCCTGGCCAGAGGGCCAGGGACTCTGCCCCAGGAGTCCTGGAGTCGATGGCTGGAGGGAGGGCTGCAGTTCTGGCCCCAGGG GGATTAAAGACGGCAGCTCCAGTG
hide sequence
RefSeq Acc Id:
XP_013840862 ⟸ XM_013985408
- UniProtKB:
F1SC77 (UniProtKB/TrEMBL), A0A8D1D249 (UniProtKB/TrEMBL), A0A4X1U0Y9 (UniProtKB/TrEMBL)
- Sequence:
MASRLLHRLRHALAGDGPGEGAAGPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDEDEEDDEEAGSDPLASGDRAAGEDTGPSCSHADRSPPPDGQRGSQLLTRQLQDFWKKSRNTLVPQR LLFEVTSANVVKDPPSKYVLYTLAVMGPGPPDRQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRQAPDLQDFFVLPELRRAQSLTCTGLYRE ALALWANAWQLQAQLGIPSGPDRPLLTLAGLAVCHQELEDPGEARACCEKALQLLGNKNPHPLLAPFLEAHVRLSWRLGLDKRQSEARLQALQEAGLTPTPPPSLKELLIKEVLD
hide sequence
Ensembl Acc Id:
ENSSSCP00000070275 ⟸ ENSSSCT00000083876
Ensembl Acc Id:
ENSSSCP00000007912 ⟸ ENSSSCT00000008128