Snx21 (sorting nexin family member 21) - Rat Genome Database

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Gene: Snx21 (sorting nexin family member 21) Ictidomys tridecemlineatus
Analyze
Symbol: Snx21
Name: sorting nexin family member 21
RGD ID: 12440610
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); phosphatidylinositol phosphate binding (inferred); phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN protein transport (inferred); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN early endosome membrane (inferred); endosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,726,092 - 191,732,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,180,851 - 7,186,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,180,533 - 7,188,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snx21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,726,092 - 191,732,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,180,851 - 7,186,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,180,533 - 7,188,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,833,799 - 45,843,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,833,799 - 45,843,276 (+)EnsemblGRCh38hg38GRCh38
GRCh372044,462,438 - 44,471,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,895,877 - 43,905,321 (+)NCBINCBI36Build 36hg18NCBI36
Build 342043,895,876 - 43,905,321NCBI
Celera2041,172,965 - 41,182,409 (+)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,204,229 - 41,213,683 (+)NCBIHuRef
CHM1_12044,365,605 - 44,375,046 (+)NCBICHM1_1
T2T-CHM13v2.02047,570,293 - 47,579,777 (+)NCBIT2T-CHM13v2.0
Snx21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,627,535 - 164,635,730 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,627,743 - 164,635,736 (+)EnsemblGRCm39 Ensembl
GRCm382164,785,759 - 164,793,810 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,785,823 - 164,793,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv372164,611,521 - 164,618,270 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,477,222 - 164,478,837 (+)NCBIMGSCv36mm8
Celera2170,723,428 - 170,730,177 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Snx21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,941,634 - 173,951,571 (+)NCBIGRCr8
mRatBN7.23153,522,474 - 153,532,235 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,522,486 - 153,532,221 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,331,129 - 157,340,710 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,830,099 - 165,839,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,573,876 - 163,583,453 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,252,634 - 161,261,880 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,252,723 - 161,264,818 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,438,430 - 167,446,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,815,636 - 155,829,250 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3152,130,304 - 152,139,862 (+)NCBICelera
Cytogenetic Map3q42NCBI
Snx21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,454,802 - 11,462,625 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,454,802 - 11,462,625 (-)NCBIChiLan1.0ChiLan1.0
SNX21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,575,496 - 51,584,015 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,568,737 - 51,576,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,173,092 - 42,181,890 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,260,483 - 43,269,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,260,483 - 43,269,406 (+)Ensemblpanpan1.1panPan2
SNX21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,143,459 - 33,149,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,143,837 - 33,149,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,670,500 - 32,676,444 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,853,757 - 33,859,704 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,854,118 - 33,859,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,112,309 - 33,118,257 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,227,390 - 33,233,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,766,518 - 33,772,465 (+)NCBIUU_Cfam_GSD_1.0
SNX21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,033,717 - 48,040,522 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,033,608 - 48,039,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,679,667 - 53,685,699 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,043,937 - 18,052,497 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,044,322 - 18,052,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,682,340 - 66,692,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,737,721 - 8,745,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,722,730 - 8,745,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005325253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006515   ⟹   ENSSTOP00000005827
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365147,180,851 - 7,186,146 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000032855   ⟹   ENSSTOP00000027058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365147,181,579 - 7,186,093 (-)Ensembl
RefSeq Acc Id: XM_005325253   ⟹   XP_005325310
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640191,726,092 - 191,732,519 (-)NCBI
SpeTri2.0NW_0049365147,180,533 - 7,188,201 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325310 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005827.3
  ENSSTOP00000027058.1
GenBank Protein KAG3263544 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005325310   ⟸   XM_005325253
- UniProtKB: I3M825 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000005827   ⟸   ENSSTOT00000006515
RefSeq Acc Id: ENSSTOP00000027058   ⟸   ENSSTOT00000032855
Protein Domains
PX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006523 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006515.3 UniProtKB/TrEMBL
  ENSSTOT00000032855.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX20/SNX21 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene Snx21 ENTREZGENE
PANTHER PTHR20939 UniProtKB/TrEMBL
  SORTING NEXIN-21 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A287D0G5_ICTTR UniProtKB/TrEMBL
  I3M825 ENTREZGENE, UniProtKB/TrEMBL