RPL19 (ribosomal protein L19) - Rat Genome Database

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Gene: RPL19 (ribosomal protein L19) Sus scrofa
Analyze
Symbol: RPL19
Name: ribosomal protein L19
RGD ID: 14081483
Description: ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); large ribosomal subunit rRNA binding (ortholog); INVOLVED IN cytoplasmic translation (ortholog); liver regeneration (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L19
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,029,380 - 23,034,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,029,377 - 23,034,337 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,482,220 - 23,487,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:11933165   PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,029,380 - 23,034,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,029,377 - 23,034,337 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,482,220 - 23,487,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381739,200,283 - 39,204,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1739,200,283 - 39,204,840 (+)EnsemblGRCh38hg38GRCh38
GRCh371737,356,536 - 37,360,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,610,062 - 34,614,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 341734,610,095 - 34,614,506NCBI
Celera1734,017,441 - 34,021,884 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1733,151,711 - 33,156,155 (+)NCBIHuRef
CHM1_11737,592,811 - 37,597,255 (+)NCBICHM1_1
T2T-CHM13v2.01740,064,160 - 40,068,609 (+)NCBIT2T-CHM13v2.0
Rpl19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,912,829 - 97,921,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,917,536 - 97,921,318 (+)EnsemblGRCm39 Ensembl
GRCm381198,022,003 - 98,030,493 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,026,710 - 98,030,492 (+)EnsemblGRCm38mm10GRCm38
MGSCv371197,888,024 - 97,891,807 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,843,076 - 97,846,567 (+)NCBIMGSCv36mm8
Celera11107,680,311 - 107,684,094 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.56NCBI
Rpl19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,514,509 - 83,522,352 (+)NCBIGRCr8
mRatBN7.21083,022,503 - 83,026,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,019,257 - 83,052,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,970,715 - 87,973,917 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,468,799 - 87,472,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,861,431 - 82,864,634 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,978,691 - 85,981,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,978,691 - 85,981,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,767,184 - 85,774,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,788,838 - 86,792,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,803,207 - 86,806,496 (+)NCBI
Celera1081,776,053 - 81,779,341 (+)NCBICelera
Cytogenetic Map10q31NCBI
Rpl19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,062,058 - 14,068,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,062,058 - 14,066,664 (+)NCBIChiLan1.0ChiLan1.0
RPL19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21925,733,579 - 25,738,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,627,713 - 27,632,224 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,066,656 - 18,071,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,342,003 - 18,346,453 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,342,003 - 18,346,399 (-)Ensemblpanpan1.1panPan2
RPL19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,171,508 - 23,175,656 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,171,508 - 23,175,656 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,642,889 - 22,647,037 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,965,721 - 23,969,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,965,721 - 23,969,869 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,737,397 - 22,741,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,998,715 - 23,002,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,123,839 - 23,127,986 (-)NCBIUU_Cfam_GSD_1.0
Rpl19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,598,930 - 22,604,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,471,025 - 14,476,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,471,200 - 14,476,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,963,846 - 66,968,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,963,460 - 66,968,731 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607737,909,118 - 37,913,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,722,743 - 3,729,456 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,725,324 - 3,729,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL19
255 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000019062   ⟹   ENSSSCP00000018556
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,029,380 - 23,034,198 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000066245   ⟹   ENSSSCP00000032258
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,029,379 - 23,033,253 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000102453   ⟹   ENSSSCP00000079071
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,029,379 - 23,033,314 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000103419   ⟹   ENSSSCP00000081072
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,029,449 - 23,033,253 (-)Ensembl
RefSeq Acc Id: XM_003131509   ⟹   XP_003131557
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11223,029,377 - 23,034,337 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003131557   ⟸   XM_003131509
- UniProtKB: A0A8D0U758 (UniProtKB/TrEMBL),   A0A8D1NAZ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000032258   ⟸   ENSSSCT00000066245
Ensembl Acc Id: ENSSSCP00000018556   ⟸   ENSSSCT00000019062
Ensembl Acc Id: ENSSSCP00000079071   ⟸   ENSSSCT00000102453
Ensembl Acc Id: ENSSSCP00000081072   ⟸   ENSSSCT00000103419
Protein Domains
Large ribosomal subunit protein eL19


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015056945 UniProtKB/TrEMBL
  ENSSSCG00025050626 UniProtKB/TrEMBL
  ENSSSCG00040001408 UniProtKB/TrEMBL
  ENSSSCG00050061977 UniProtKB/TrEMBL
  ENSSSCG00060057565 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019062.4 UniProtKB/TrEMBL
  ENSSSCT00000066245.3 UniProtKB/TrEMBL
  ENSSSCT00000102453 ENTREZGENE
  ENSSSCT00000102453.1 UniProtKB/TrEMBL
  ENSSSCT00000103419.1 UniProtKB/TrEMBL
  ENSSSCT00015076034.1 UniProtKB/TrEMBL
  ENSSSCT00015076818.1 UniProtKB/TrEMBL
  ENSSSCT00025069238.1 UniProtKB/TrEMBL
  ENSSSCT00040001713.1 UniProtKB/TrEMBL
  ENSSSCT00050084436.1 UniProtKB/TrEMBL
  ENSSSCT00060078437.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  1.10.1650.10 UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_L19/L19e UniProtKB/TrEMBL
  Ribosomal_L19/L19e_CS UniProtKB/TrEMBL
  Ribosomal_L19/L19e_dom1 UniProtKB/TrEMBL
  Ribosomal_L19_euka UniProtKB/TrEMBL
  RPL19 UniProtKB/TrEMBL
KEGG Report ssc:396989 UniProtKB/TrEMBL
NCBI Gene RPL19 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
  PTHR10722 UniProtKB/TrEMBL
Pfam Ribosomal_L19e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L19E UniProtKB/TrEMBL
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP SSF48140 UniProtKB/TrEMBL
UniProt A0A286ZL26_PIG UniProtKB/TrEMBL
  A0A8D0U758 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NAZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FIL7_PIG UniProtKB/TrEMBL
  A0A8W4FNK1_PIG UniProtKB/TrEMBL
  F2Z546_PIG UniProtKB/TrEMBL