Rpl19 (ribosomal protein L19) - Rat Genome Database

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Gene: Rpl19 (ribosomal protein L19) Chinchilla lanigera
Analyze
Symbol: Rpl19
Name: ribosomal protein L19
RGD ID: 8904770
Description: ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); large ribosomal subunit rRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); liver regeneration (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L19
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,062,058 - 14,068,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,062,058 - 14,066,664 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,062,058 - 14,068,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,062,058 - 14,066,664 (+)NCBIChiLan1.0ChiLan1.0
RPL19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381739,200,283 - 39,204,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1739,200,283 - 39,204,840 (+)EnsemblGRCh38hg38GRCh38
GRCh371737,356,536 - 37,360,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,610,062 - 34,614,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 341734,610,095 - 34,614,506NCBI
Celera1734,017,441 - 34,021,884 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1733,151,711 - 33,156,155 (+)NCBIHuRef
CHM1_11737,592,811 - 37,597,255 (+)NCBICHM1_1
T2T-CHM13v2.01740,064,160 - 40,068,609 (+)NCBIT2T-CHM13v2.0
Rpl19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,912,829 - 97,921,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,917,536 - 97,921,318 (+)EnsemblGRCm39 Ensembl
GRCm381198,022,003 - 98,030,493 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,026,710 - 98,030,492 (+)EnsemblGRCm38mm10GRCm38
MGSCv371197,888,024 - 97,891,807 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,843,076 - 97,846,567 (+)NCBIMGSCv36mm8
Celera11107,680,311 - 107,684,094 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.56NCBI
Rpl19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,514,509 - 83,522,352 (+)NCBIGRCr8
mRatBN7.21083,022,503 - 83,026,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,019,257 - 83,052,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,970,715 - 87,973,917 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,468,799 - 87,472,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,861,431 - 82,864,634 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,978,691 - 85,981,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,978,691 - 85,981,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,767,184 - 85,774,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,788,838 - 86,792,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,803,207 - 86,806,496 (+)NCBI
Celera1081,776,053 - 81,779,341 (+)NCBICelera
Cytogenetic Map10q31NCBI
RPL19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21925,733,579 - 25,738,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,627,713 - 27,632,224 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,066,656 - 18,071,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,342,003 - 18,346,453 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,342,003 - 18,346,399 (-)Ensemblpanpan1.1panPan2
RPL19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,171,508 - 23,175,656 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,171,508 - 23,175,656 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,642,889 - 22,647,037 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,965,721 - 23,969,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,965,721 - 23,969,869 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,737,397 - 22,741,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,998,715 - 23,002,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,123,839 - 23,127,986 (-)NCBIUU_Cfam_GSD_1.0
Rpl19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,598,930 - 22,604,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,471,025 - 14,476,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,471,200 - 14,476,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,029,380 - 23,034,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,029,377 - 23,034,337 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,482,220 - 23,487,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,963,846 - 66,968,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,963,460 - 66,968,731 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607737,909,118 - 37,913,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,722,743 - 3,729,456 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,725,324 - 3,729,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023343   ⟹   ENSCLAP00000023123
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545114,062,058 - 14,068,814 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023344   ⟹   ENSCLAP00000023124
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545114,064,058 - 14,066,612 (+)Ensembl
RefSeq Acc Id: XM_005394299   ⟹   XP_005394356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545114,062,058 - 14,066,664 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023123
  ENSCLAP00000023123.1
  ENSCLAP00000023124.1
Reference Protein Sequences
RefSeq Acc Id: XP_005394356   ⟸   XM_005394299
- UniProtKB: A0A8C2W4L2 (UniProtKB/TrEMBL),   A0A8C2W6X5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023123   ⟸   ENSCLAT00000023343
RefSeq Acc Id: ENSCLAP00000023124   ⟸   ENSCLAT00000023344
Protein Domains
Large ribosomal subunit protein eL19


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015873 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023343 ENTREZGENE
  ENSCLAT00000023343.1 UniProtKB/TrEMBL
  ENSCLAT00000023344.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  1.10.1650.10 UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_L19/L19e UniProtKB/TrEMBL
  Ribosomal_L19/L19e_CS UniProtKB/TrEMBL
  Ribosomal_L19/L19e_dom1 UniProtKB/TrEMBL
  Ribosomal_L19_euka UniProtKB/TrEMBL
  RPL19 UniProtKB/TrEMBL
NCBI Gene Rpl19 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
  PTHR10722 UniProtKB/TrEMBL
Pfam Ribosomal_L19e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L19E UniProtKB/TrEMBL
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP SSF48140 UniProtKB/TrEMBL
UniProt A0A8C2W4L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W6X5 ENTREZGENE, UniProtKB/TrEMBL