POLR2A (RNA polymerase II subunit A) - Rat Genome Database

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Gene: POLR2A (RNA polymerase II subunit A) Sus scrofa
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Symbol: POLR2A
Name: RNA polymerase II subunit A
RGD ID: 14079961
Description: ENCODES a protein that exhibits kinase binding (ortholog); magnesium ion binding (ortholog); microfibril binding (ortholog); INVOLVED IN cellular response to oxygen levels (ortholog); DNA-templated transcription termination (ortholog); positive regulation of RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); Developmental Disease (ortholog); FOUND IN nucleolus (ortholog); Prp19 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA-directed RNA polymerase II subunit RPB1; polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,779,828 - 52,807,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,779,833 - 52,806,210 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,952,789 - 54,972,415 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:38697112  


Genomics

Comparative Map Data
POLR2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,779,828 - 52,807,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,779,833 - 52,806,210 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,952,789 - 54,972,415 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,484,366 - 7,514,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,484,366 - 7,514,616 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,387,685 - 7,417,933 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,328,422 - 7,358,653 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,328,421 - 7,358,653NCBI
Celera177,414,117 - 7,444,201 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,281,725 - 7,311,963 (+)NCBIHuRef
CHM1_1177,396,777 - 7,426,944 (+)NCBICHM1_1
T2T-CHM13v2.0177,388,413 - 7,418,678 (+)NCBIT2T-CHM13v2.0
Polr2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,624,823 - 69,649,459 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,624,823 - 69,649,463 (-)EnsemblGRCm39 Ensembl
GRCm381169,733,997 - 69,758,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,733,997 - 69,758,637 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,547,912 - 69,571,725 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,550,605 - 69,574,418 (-)NCBIMGSCv36mm8
MGSCv361170,318,517 - 70,342,330 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
Polr2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,951,162 - 54,977,179 (-)NCBIGRCr8
mRatBN7.21054,452,438 - 54,478,486 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,452,441 - 54,478,455 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01056,339,277 - 56,364,888 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,339,284 - 56,365,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,084,677 - 56,110,778 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,552,872 - 56,579,172 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1053,606,814 - 53,632,373 (-)NCBICelera
Cytogenetic Map10q24NCBI
Polr2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,421,256 - 9,447,530 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,423,540 - 9,447,530 (-)NCBIChiLan1.0ChiLan1.0
POLR2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,079,746 - 15,109,789 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,045,567 - 17,075,869 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,516,940 - 7,546,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,502,807 - 7,532,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,502,807 - 7,532,521 (+)Ensemblpanpan1.1panPan2
POLR2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,403,814 - 32,429,717 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,403,829 - 32,429,681 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,541,944 - 32,567,696 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,509,534 - 32,535,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,509,552 - 32,535,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,474,744 - 32,500,516 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,433,445 - 32,459,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,610,752 - 32,636,501 (+)NCBIUU_Cfam_GSD_1.0
Polr2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,281,387 - 47,307,489 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595755,535 - 781,783 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595755,585 - 781,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,860,487 - 6,889,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,860,677 - 6,888,618 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,516,279 - 14,548,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,097,294 - 10,122,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,098,133 - 10,122,783 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POLR2A
768 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000029425   ⟹   ENSSSCP00000024326
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,779,940 - 52,807,598 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068700   ⟹   ENSSSCP00000070975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,779,828 - 52,791,950 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000093685   ⟹   ENSSSCP00000075801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,779,828 - 52,792,706 (+)Ensembl
RefSeq Acc Id: XM_021067825   ⟹   XP_020923484
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,779,833 - 52,806,210 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020923484   ⟸   XM_021067825
- UniProtKB: A0A480Z7V7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024326   ⟸   ENSSSCT00000029425
Ensembl Acc Id: ENSSSCP00000070975   ⟸   ENSSSCT00000068700
Ensembl Acc Id: ENSSSCP00000075801   ⟸   ENSSSCT00000093685
Protein Domains
RNA polymerase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028278 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00040018791 UniProtKB/TrEMBL
  ENSSSCG00045031800 UniProtKB/TrEMBL
  ENSSSCG00055013536 UniProtKB/TrEMBL
  ENSSSCG00065055447 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029425 ENTREZGENE
  ENSSSCT00000029425.4 UniProtKB/TrEMBL
  ENSSSCT00000068700.2 UniProtKB/TrEMBL
  ENSSSCT00000093685.1 UniProtKB/TrEMBL
  ENSSSCT00040025383.1 UniProtKB/TrEMBL
  ENSSSCT00040025481.1 UniProtKB/TrEMBL
  ENSSSCT00040025605.1 UniProtKB/TrEMBL
  ENSSSCT00045054287.1 UniProtKB/TrEMBL
  ENSSSCT00055026705.1 UniProtKB/TrEMBL
  ENSSSCT00065075936.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.132.30 UniProtKB/TrEMBL
  1.10.150.390 UniProtKB/TrEMBL
  1.10.274.100 UniProtKB/TrEMBL
  2.40.40.20 UniProtKB/TrEMBL
  3.30.1360.140 UniProtKB/TrEMBL
  4.10.860.120 UniProtKB/TrEMBL
  6.10.250.2940 UniProtKB/TrEMBL
  6.20.50.80 UniProtKB/TrEMBL
  RNA polymerase ii UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DNA-dir_RpoC_beta_prime UniProtKB/TrEMBL
  RNA_pol_asu UniProtKB/TrEMBL
  RNA_pol_II_repeat_euk UniProtKB/TrEMBL
  RNA_pol_N UniProtKB/TrEMBL
  RNA_pol_Rpb1_1 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3_sf UniProtKB/TrEMBL
  RNA_pol_Rpb1_4 UniProtKB/TrEMBL
  RNA_pol_Rpb1_5 UniProtKB/TrEMBL
  RNA_pol_Rpb1_6 UniProtKB/TrEMBL
  RNA_pol_Rpb1_7 UniProtKB/TrEMBL
  RNA_pol_Rpb1_7_sf UniProtKB/TrEMBL
  RNA_pol_Rpb1_clamp_domain UniProtKB/TrEMBL
  Rpb1_funnel_sf UniProtKB/TrEMBL
NCBI Gene POLR2A ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 UniProtKB/TrEMBL
  PTHR19376 UniProtKB/TrEMBL
Pfam RNA_pol_Rpb1_1 UniProtKB/TrEMBL
  RNA_pol_Rpb1_2 UniProtKB/TrEMBL
  RNA_pol_Rpb1_3 UniProtKB/TrEMBL
  RNA_pol_Rpb1_4 UniProtKB/TrEMBL
  RNA_pol_Rpb1_5 UniProtKB/TrEMBL
  RNA_pol_Rpb1_6 UniProtKB/TrEMBL
  RNA_pol_Rpb1_7 UniProtKB/TrEMBL
  RNA_pol_Rpb1_R UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE RNA_POL_II_REPEAT UniProtKB/TrEMBL
SMART RPOLA_N UniProtKB/TrEMBL
Superfamily-SCOP beta and beta-prime subunits of DNA dependent RNA-polymerase UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A480Z7V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RA15_PIG UniProtKB/TrEMBL
  A0A8D1DPV6_PIG UniProtKB/TrEMBL
  A0A8D1DQM6_PIG UniProtKB/TrEMBL
  A0A8D1DS11_PIG UniProtKB/TrEMBL
  A0A8D1J0W7_PIG UniProtKB/TrEMBL
  A0A8W4F905_PIG UniProtKB/TrEMBL
  I3LJR4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91646 ENTREZGENE