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Gene: VENTX (VENT homeobox) Sus scrofa

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Symbol:

VENTX

Name:

VENT homeobox

RGD ID:

14064207

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein VENTX

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VENTX (VENT homeobox)	HGNC	NCBI
Mus musculus (house mouse):	Msx3 (msh homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ventx (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ventx (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VENTX (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VENTX (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ventx (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VENTX (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ventx (VENT homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	141,265,966 - 141,271,379 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	153,230,251 - 153,234,337 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VENTX	Pig	distal 10q deletion syndrome		ISO	VENTX (Homo sapiens)	8554872	ClinVar Annotator: match by term: Distal 10q deletion syndrome	ClinVar	PMID:31690835

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VENTX	Pig	esophagus squamous cell carcinoma		ISO	VENTX (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:30431698

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VENTX	Pig	embryonic morphogenesis	involved_in	IBA	MGI:97168 more ...	150520179		GO_Central	GO_REF:0000033
VENTX	Pig	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:P70354 and ensembl:ENSMUSP00000133484	150520179		Ensembl	GO_REF:0000107
VENTX	Pig	positive regulation of transcription by RNA polymerase II	involved_in	ISO	VENTX (Homo sapiens)	9068941	PMID:21325273	NTNU_SB	PMID:21325273
VENTX	Pig	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VENTX	Pig	regulation of transcription by RNA polymerase II	involved_in	IEA	GO:0000981	150520179		GOC	GO_REF:0000108
VENTX	Pig	regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:P70354 and ensembl:ENSMUSP00000133484	150520179		Ensembl	GO_REF:0000107
VENTX	Pig	regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:106587 more ...	150520179		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VENTX	Pig	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VENTX	Pig	nucleus	located_in	IEA	UniProtKB:P70354 and ensembl:ENSMUSP00000133484	150520179		Ensembl	GO_REF:0000107
VENTX	Pig	nucleus	is_active_in	IBA	FB:FBgn0000492 more ...	150520179		GO_Central	GO_REF:0000033
VENTX	Pig	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
VENTX	Pig	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VENTX	Pig	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
VENTX	Pig	DNA binding	enables	IEA	InterPro:IPR001356 and InterPro:IPR020479	150520179		InterPro	GO_REF:0000002
VENTX	Pig	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VENTX	Pig	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	ISO	VENTX (Homo sapiens)	9068941	PMID:21325273	NTNU_SB	PMID:21325273
VENTX	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VENTX	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	MGI:97168 more ...	150520179		GO_Central	GO_REF:0000033
VENTX	Pig	histone acetyltransferase binding	enables	IEA	UniProtKB:P70354 and ensembl:ENSMUSP00000133484	150520179		Ensembl	GO_REF:0000107
VENTX	Pig	histone acetyltransferase regulator activity	enables	IEA	UniProtKB:P70354 and ensembl:ENSMUSP00000133484	150520179		Ensembl	GO_REF:0000107
VENTX	Pig	protein binding	enables	ISO	UniProtKB:A0A0C4DGF1 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
VENTX	Pig	protein binding	enables	ISO	PR:O89090	9068941	PMID:1909605	MGI	PMID:1909605
VENTX	Pig	protein binding	enables	ISO	UniProtKB:O75553 more ...	9068941	PMID:31515488	IntAct	PMID:31515488
VENTX	Pig	protein binding	enables	ISO	UniProtKB:O75553 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
VENTX	Pig	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IBA	MGI:97168 more ...	150520179		GO_Central	GO_REF:0000033
VENTX	Pig	sequence-specific DNA binding	enables	ISO	VENTX (Homo sapiens)	9068941	PMID:23332764	NTNU_SB	PMID:23332764
VENTX	Pig	sequence-specific double-stranded DNA binding	enables	ISO	VENTX (Homo sapiens)	9068941	PMID:28473536	ARUK-UCL	PMID:28473536

PMID:22301074	PMID:30032202

VENTX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	141,265,966 - 141,271,379 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	153,230,251 - 153,234,337 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VENTX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	133,237,855 - 133,241,928 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	133,237,855 - 133,241,928 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	135,051,359 - 135,055,432 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	134,901,398 - 134,905,423 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	134,940,288 - 134,944,314	NCBI
Celera	10	128,461,096 - 128,465,122 (-)	NCBI		Celera
Cytogenetic Map	10	q26.3	NCBI
HuRef	10	128,597,892 - 128,601,917 (+)	NCBI		HuRef
CHM1_1	10	135,332,231 - 135,337,304 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	134,193,345 - 134,197,419 (+)	NCBI		T2T-CHM13v2.0

Msx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	139,626,070 - 139,629,001 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	139,626,070 - 139,629,002 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	140,046,157 - 140,049,088 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	140,046,157 - 140,049,089 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	147,232,056 - 147,234,987 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	139,897,582 - 139,900,409 (-)	NCBI		MGSCv36	mm8
Celera	7	139,844,251 - 139,847,182 (-)	NCBI		Celera
Cytogenetic Map	7	F4	NCBI
cM Map	7	85.04	NCBI

Ventx
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	90,707,273 - 90,708,315 (-)	NCBI		GRCr8
mRatBN7.2	X	86,483,893 - 86,484,900 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	86,483,893 - 86,484,954 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	93,064,417 - 93,067,181 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	93,064,686 - 93,065,675 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	92,964,258 - 92,966,244 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	110,278,093 - 110,284,738 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	87,622,250 - 87,623,796 (-)	NCBI		Celera
Cytogenetic Map	X	q31	NCBI

Ventx
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955477	10,945,539 - 10,948,735 (-)	NCBI	ChiLan1.0	ChiLan1.0

VENTX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	145,358,390 - 145,361,771 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	145,363,746 - 145,367,128 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	10	134,144,329 - 134,149,277 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	134,144,411 - 134,149,277 (+)	Ensembl	panpan1.1		panPan2

VENTX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	40,836,688 - 40,840,145 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	40,836,403 - 40,840,127 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	40,892,938 - 40,896,442 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	41,474,254 - 41,477,565 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	41,474,254 - 41,477,129 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	40,956,347 - 40,960,315 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	40,946,496 - 40,949,807 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	41,349,114 - 41,352,425 (+)	NCBI		UU_Cfam_GSD_1.0

Ventx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	6,121,855 - 6,135,914 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936486	19,434,362 - 19,436,025 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VENTX
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666048	87,601,609 - 87,604,034 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ventx
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624737	13,415,558 - 13,416,906 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in VENTX
106 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	22	3	2	5	14	12	22	3	5	3


RefSeq Transcripts	XM_013994455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021073937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01052443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013994455 ⟹ XP_013849909

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	141,265,966 - 141,271,379 (-)	NCBI

Sequence:

show sequence

AGTAAACATGCATCGAATTTGGTTGCCGGTCCTGTGTTCTGAGATAGTAATTGGACATAAAGTCGTCATCCGCAAACCAATTTCATGGTTTATTTTGAAACTCAGCCAGGGTTTCCTCCATGGAGGGA
GGGAGTGGGGAGCAGGGCTTCTCTGCAGCACCCAAGAAGGTTTTTAAACCAAAGAGTCGTCTAGTTTTGGTAAAACAATCCGGATAAGTGCGTGCCTCTGTCCCGCCTTGGCTTCTCCTCCTCCGAGT
CGTGGGGGACCTTCTCTGCCTGGTCTGGGGGCCCCGGGGGGTTTGGGGGTTAAGTCCCCCAACCGGGGGCTTTTCCCGGGTCTCAGGTTCCCGGTCTCTGGACAATTTCGCCCAGCAAGTGTGAAGCG
AGAAAGGCTGACAGCCAATCCAACATCCAGAGATGGACTGGGGGCCCCTGACCAGGACCCGCCGGAAGGGTCCTGCCTGTGTCCCGGCCGTGCGTCCGAGGAGGTAAGAGGTCGGCCCCTCCGCCTTC
CCCGCGGCTCCAGACCCTGTCTAGGGACCTTCGCTGGGCCCTGCTGTCTGCACCTGGGGTCAGGTAGCGGGACACCTGGGAGAGCTCCTAAAAAGCCACTCAGGGTCAGAGCACAGCGGCCCGACTTC
AAGGTCATGGAAGCAGAATCCTCAGTCCGGGCGCAGCGTCCATGAAAAGCGGCCCCCAGGGTTCGGAGAGAGCGCCCGGGCCACGGCAGGCTCATGCCGAGGGTTCTGGCTCCGCGCTGGGGCGCAGG
GGGAAGAGCAGCCGGCGAGCGACAGAGCGACAACACGGCAGGAGGCGCGGGCGCCGCGTCTCTGATGGCGCTGAACTCTCTGTGCCGCTGGAGCCGCGCGCGGTCACCGGCTTGCGCTCAACCAGGTC
GCGCCCTCTCTGGGCTCCGCCGCGTGGGGAGGCCGGGGCCAGCTCCTCCTGCTCCACAGCTGCTCCAGCCGCCTGGGACAGGACCCAGGAGCGCAGCGCTCGGAATAGGACAGGCTGGCGCCGGGAGA
GTGGAGCGCGCCAGGCGGGCGGGCCTGGGGAGCCAGGGTCCCGCCCCTCCCTGCCCGTCCTGCCTCCCGGGTCGGCGCAGCCAATGAGCGCCTAGATCTACGCTGCAGCGACCGCGCGATTGGACAGC
CGACCACGACAGGGGCACCGCCCTTTTATAGGGCTCTGAGGGGCGGGGCGCCGCCGAGCCGGGGCCGTCTCGCCGAGTTTCGGCATGAACCCCGCTGGGCTCAGGACGTGCGGCGGGGACGGTGCGGG
GCCCGGCCCGCTGCCCTTCAGCGTCGAGTCGTTGCTGGAAGCAGAGCGCGGGCTAGGCTCGGAGCCCACGGAACCCCGGGAGGAGAGGCCGCGGGGCGCCGCGGAACCCAGGACTTGGTTTCCGCTGG
CCGCCCCCTCGTCCTCCCCACGCGCCCCCAGCCCCGCCCCCTGCCCCCTCCGGCCACACAAGAACCGCAAACCTCGGACGCCCTTCACCACCGCGCAGCTGCTGGCCCTGGAGCGCAAGTTCCGCCAG
AAGCAGTACCTGTCCATCGCCGAGCGCGCTGAGTTCTCCGGCAGCCTGAGCCTCTCCGAGACGCAGGTCAAGATCTGGTTTCAGAACCGCCGAGCCAAGGCCAAGCGACTGCAGGAGGCCGAGGTGGA
GAGGATGAAGCTGGCGGCCAGGCCGCTGCTGCACCCGTTTGCCCTGCCCTTCCCCCTGGGCACCCACCTGTACGGCTTCCCGGCGGTGTCCCGCGGTGCAGCAGGCTCCCTCCCGCAGGTACCGGGAC
GCCTCCCCTCGCCCCTGGCCGCCTACTGCAGCCATCGTCCTCCCTATGTTCCTGGAAAAATGAAAAGTCATGATGAATTTTAAAGGGAAGTTGACCCAGTTACTGAAGTGTGCTGCGAAGGCCTGGTG
GCGGGAAGGGGGACGGAAGCCAGACGCCGCCCATCCCGCCCGAGGTGTGTCCCGGTGAGGCCTGAGCCTGTGCTCTTTAAACTCAGAGCCCGACTCCAGTTGGATTCCTGAGGGGACAGGCCCGCCTG
TGGTCTGTAATTGTGCCAGAGACAGTGCGTGGGTTCCACTGCACCAGGGGAGCCAGCCAAGGGGCCGAGGGGAGCGACCCCCCCCCCGCGTCTCCCCGGCGCCTGCGCGGGCACTCGGATCCTTTACA
CCCTGGAGCCCCCACAGCCAGGGCTGGAGGAGGCTTCGCTGCATCAGTTTGCCACGTGTCTCTCCATGACCAGTTCTGTCCGGGACACCCACCTGGGAGCGGCCCCACCCAGGTCCCCACTGAGCCGG
TCCAGAGACCTTTGTCTGACTCAGGGCTCGGCACCCAGACCACCGAAGGGGGGTTGAGGCTCTGTGCGCCCGGAGCCCCTGAGAGCCCACCAGCTGGGTGCCCTTGCTGGGCAAGGCAGAGGCAGACG
TCCAAGACCAAGAAATCCCCCCTTCCTGAGCGGGCTCCTGCCTGGGGCCGGGGCACTGCCAGCTTCCTCCTTCAGCCACTGTGTCTCCAAGGCCTGGGGGCTGCCCCGAGCCGGCCGCAGCCAGGGTG
GGAGAACTCCCCCTCAGGACCCCGCACAGAAGGGTTCGAACTCAGTCCTGGCATCCACACCATTCCCGGTGGCGGCTGTTGGAGTCGGAGACAGCAGCTCTGCCAGCTGGACGGGGGCTGGCGGGCAG
TTCAGGGCAGTCCGTGCCTCTTGGAGGTGCAGGGGTCAAAGTGGGGAAGGTGGGGACTGTGGAGAACCCGGACAGAGACCCTGCCAGCAAGCCTAGTGTTGGGGGACTGCCCTGGGGCTCCCAGGTCA
GCGTCACCTCAGCAAGGGTGGCAGGGTCCAGGTTGGGCAGATCCATCACTGGTTCCTGGGTGGGGTCAACCTGGGCCCCCAGGGCCCCTCCTGGCACAGGAAGCTTGAAGGCCTCTGCTGGTCCTCAA
ACCAGCCTTGCCTGCTCTGTGTCTGGGGGTGCTGCTCTCGGCCCACCCCGGGAGTGGACCCCAGGCCGCAGGTCTTGTGCCTGTGGACACTCGGGGTGGGGGGTGTCAGTCCTATGTCGGTACCTCTG
GGGGAGGGACTCTGCAGTCTGTCCATGGATCTCAAAGGATCTAAAACAGTCGTTGTCAGGAGGGTAGCGGCCTCCTTGTGGCCTCCTAAAAATACAACTCTGGGTGCTTCTAAGCTGGGTCCTGGGAC
TGTGGCATCCACTGTTCTTGTCACATGTGGGATTTCATGTGTGCTTTTGTGGGTATGAAACATTTCATGGAGTCCTCCTGTGGCCCAGAGGGTCAAGGATCTGGTGCCACTGCAACGGCTTGGGCACA
GTCCAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021073937 ⟹ XP_020929596

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	141,265,966 - 141,271,379 (-)	NCBI

Sequence:

show sequence

AGTAAACATGCATCGAATTTGGTTGCCGGTCCTGTGTTCTGAGATAGTAATTGGACATAAAGTC
GTCATCCGCAAACCAATTTCATGGTTTATTTTGAAACTCAGCCAGGGTTTCCTCCATGGAGGGAGGGAGTGGGGAGCAGGGCTTCTCTGCAGCACCCAAGAAGGTTTTTAAACCAAAGAGTCGTCTAG
TTTTGGTAAAACAATCCGGATAAGTGCGTGCCTCTGTCCCGCCTTGGCTTCTCCTCCTCCGAGTCGTGGGGGACCTTCTCTGCCTGGTCTGGGGGCCCCGGGGGGTTTGGGGGTTAAGTCCCCCAACC
GGGGGCTTTTCCCGGGTCTCAGGTTCCCGGTCTCTGGACAATTTCGCCCAGCAAGTGTGAAGCGAGAAAGGCTGACAGCCAATCCAACATCCAGAGATGGACTGGGGGCCCCTGACCAGGACCCGCCG
GAAGGGTCCTGCCTGTGTCCCGGCCGTGCGTCCGAGGAGGTAAGAGGTCGGCCCCTCCGCCTTCCCCGCGGCTCCAGACCCTGTCTAGGGACCTTCGCTGGGCCCTGCTGTCTGCACCTGGGGTCAGG
TAGCGGGACACCTGGGAGAGCTCCTAAAAAGCCACTCAGGGTCAGAGCACAGCGGCCCGACTTCAAGGTCATGGAAGCAGAATCCTCAGTCCGGGCGCAGCGTCCATGAAAAGCGGCCCCCAGGGTTC
GGAGAGAGCGCCCGGGCCACGGCAGGCTCATGCCGAGGGTTCTGGCTCCGCGCTGGGGCGCAGGGGGAAGAGCAGCCGGCGAGCGACAGAGCGACAACACGGCAGGAGGCGCGGGCGCCGCGTCTCTG
ATGGCGCTGAACTCTCTGTGCCGCTGGAGCCGCGCGCGGTCACCGGCTTGCGCTCAACCAGGTCGCGCCCTCTCTGGGCTCCGCCGCGTGGGGAGGCCGGGGCCAGCTCCTCCTGCTCCACAGCTGCT
CCAGCCGCCTGGGACAGGACCCAGGAGCGCAGCGCTCGGAATAGGACAGGCTGGCGCCGGGAGAGTGGAGCGCGCCAGGCGGGCGGGCCTGGGGAGCCAGGGTCCCGCCCCTCCCTGCCCGTCCTGCC
TCCCGGGTCGGCGCAGCCAATGAGCGCCTAGATCTACGCTGCAGCGACCGCGCGATTGGACAGCCGACCACGACAGGGGCACCGCCCTTTTATAGGGCTCTGAGGGGCGGGGCGCCGCCGAGCCGGGG
CCGTCTCGCCGAGTTTCGGCATGAACCCCGCTGGGCTCAGGACGTGCGGCGGGGACGGTGCGGGGCCCGGCCCGCTGCCCTTCAGCGTCGAGTCGTTGCTGGAAGCAGAGCGCGGGCTAGGCTCGGAG
CCCACGGAACCCCGGGAGGAGAGGCCGCGGGGCGCCGCGGAACCCAGGACTTGGTTTCCGCTGGCCGCCCCCTCGTCCTCCCCACGTAAGTGCCCTGCCGCACGGTCCCAGGGTGCGAGAGGATCCCA
CCAAGCCCAAGGTCGGAGGACCAGGGCGGGAAGGGCGCTGTCCCTTGTAACTTTGGAGAGTAACCAGCCACTAAGGTGCGGCCTGAGCGCAGAGAAAGAACCAGCCCCCACGAGCCCGTCCGCCCCCT
CCCGCGCGCGCGAGCCCTGCAGCTGCTCCCCGTCCCACGCCGATCAGGCTTCTGCTGTACCTTGGGGCGGAGCGCGCAACCCAAGACCCCGGGCTTCTTGTCTCAGATTCTCTCCTGCCGAGCACCCC
TTCAGCCCCGTCAGTCCCCACGCGTGGTTAACTTCCGCTTCGCCGAGTCCCGCCTCTGCGGTTACCACTCAGTTCTTGCAGCGACTTCGCGCCCAGTCTCTCAGTTCGCCAAATGGGCAGAGGTCCCC
CTCCCTGGGGCGCAGGGCCACCGATCTGGGGAACAGAGCCCGAGGCTACCGCGACGCGCCATCGCCCCTGTGCCTCGCTTCTCTTACCCCAGAGGCTTTGGAGGTCTCCTCTGAGGGCCGCGGTCACC
CAGCCGCAACTTGCATCCGGCACCAGCCTTTGCGGTGATCCAGGAGTGCGGGAAAGGAGCGCGCGCTGCCGGGTCTCAGCGCCCGCTTTGTGCTCTTTACCCCCAGGCGCCCCCAGCCCCGCCCCCTG
CCCCCTCCGGCCACACAAGAACCGCAAACCTCGGACGCCCTTCACCACCGCGCAGCTGCTGGCCCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCCATCGCCGAGCGCGCTGAGTTCTCCGGCA
GCCTGAGCCTCTCCGAGACGCAGGTCAAGATCTGGTTTCAGAACCGCCGAGCCAAGGCCAAGCGACTGCAGGAGGCCGAGGTGGAGAGGATGAAGCTGGCGGCCAGGCCGCTGCTGCACCCGTTTGCC
CTGCCCTTCCCCCTGGGCACCCACCTGTACGGCTTCCCGGCGGTGTCCCGCGGTGCAGCAGGCTCCCTCCCGCAGGTACCGGGACGCCTCCCCTCGCCCCTGGCCGCCTACTGCAGCCATCGTCCTCC
CTATGTTCCTGGAAAAATGAAAAGTCATGATGAATTTTAAAGGGAAGTTGACCCAGTTACTGAAGTGTGCTGCGAAGGCCTGGTGGCGGGAAGGGGGACGGAAGCCAGACGCCGCCCATCCCGCCCGA
GGTGTGTCCCGGTGAGGCCTGAGCCTGTGCTCTTTAAACTCAGAGCCCGACTCCAGTTGGATTCCTGAGGGGACAGGCCCGCCTGTGGTCTGTAATTGTGCCAGAGACAGTGCGTGGGTTCCACTGCA
CCAGGGGAGCCAGCCAAGGGGCCGAGGGGAGCGACCCCCCCCCCGCGTCTCCCCGGCGCCTGCGCGGGCACTCGGATCCTTTACACCCTGGAGCCCCCACAGCCAGGGCTGGAGGAGGCTTCGCTGCA
TCAGTTTGCCACGTGTCTCTCCATGACCAGTTCTGTCCGGGACACCCACCTGGGAGCGGCCCCACCCAGGTCCCCACTGAGCCGGTCCAGAGACCTTTGTCTGACTCAGGGCTCGGCACCCAGACCAC
CGAAGGGGGGTTGAGGCTCTGTGCGCCCGGAGCCCCTGAGAGCCCACCAGCTGGGTGCCCTTGCTGGGCAAGGCAGAGGCAGACGTCCAAGACCAAGAAATCCCCCCTTCCTGAGCGGGCTCCTGCCT
GGGGCCGGGGCACTGCCAGCTTCCTCCTTCAGCCACTGTGTCTCCAAGGCCTGGGGGCTGCCCCGAGCCGGCCGCAGCCAGGGTGGGAGAACTCCCCCTCAGGACCCCGCACAGAAGGGTTCGAACTC
AGTCCTGGCATCCACACCATTCCCGGTGGCGGCTGTTGGAGTCGGAGACAGCAGCTCTGCCAGCTGGACGGGGGCTGGCGGGCAGTTCAGGGCAGTCCGTGCCTCTTGGAGGTGCAGGGGTCAAAGTG
GGGAAGGTGGGGACTGTGGAGAACCCGGACAGAGACCCTGCCAGCAAGCCTAGTGTTGGGGGACTGCCCTGGGGCTCCCAGGTCAGCGTCACCTCAGCAAGGGTGGCAGGGTCCAGGTTGGGCAGATC
CATCACTGGTTCCTGGGTGGGGTCAACCTGGGCCCCCAGGGCCCCTCCTGGCACAGGAAGCTTGAAGGCCTCTGCTGGTCCTCAAACCAGCCTTGCCTGCTCTGTGTCTGGGGGTGCTGCTCTCGGCC
CACCCCGGGAGTGGACCCCAGGCCGCAGGTCTTGTGCCTGTGGACACTCGGGGTGGGGGGTGTCAGTCCTATGTCGGTACCTCTGGGGGAGGGACTCTGCAGTCTGTCCATGGATCTCAAAGGATCTA
AAACAGTCGTTGTCAGGAGGGTAGCGGCCTCCTTGTGGCCTCCTAAAAATACAACTCTGGGTGCTTCTAAGCTGGGTCCTGGGACTGTGGCATCCACTGTTCTTGTCACATGTGGGATTTCATGTGTG
CTTTTGTGGGTATGAAACATTTCATGGAGTCCTCCTGTGGCCCAGAGGGTCAAGGATCTGGTGCCACTGCAACGGCTTGGGCACAGTCCAAAAAAAAA

hide sequence


Protein RefSeqs	XP_013849909	(Get FASTA)	NCBI Sequence Viewer
	XP_020929596	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000039546.3
	ENSSSCP00035044766.1
	ENSSSCP00055008789.1
	ENSSSCP00065045654.1

RefSeq Acc Id:	XP_013849909 ⟸ XM_013994455
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1TW80 (UniProtKB/TrEMBL), A0A8D1BG66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPAGLRTCGGDGAGPGPLPFSVESLLEAERGLGSEPTEPREERPRGAAEPRTWFPLAAPSSSPRAPSPAPCPLRPHKNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSGSLSLSETQVKIWFQ NRRAKAKRLQEAEVERMKLAARPLLHPFALPFPLGTHLYGFPAVSRGAAGSLPQVPGRLPSPLAAYCSHRPPYVPGKMKSHDEF hide sequence

RefSeq Acc Id:

XP_020929596 ⟸ XM_021073937

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRGPPPWGAGPPIWGTEPEATATRHRPCASLLLPQRLWRSPLRAAVTQPQLASGTSLCGDPGVRERSARCRVSAPALCSLPPGAPSPAPCPLRPHKNRKPRTPFTTAQLLALERKFRQKQYLSIAER
AEFSGSLSLSETQVKIWFQNRRAKAKRLQEAEVERMKLAARPLLHPFALPFPLGTHLYGFPAVSRGAAGSLPQVPGRLPSPLAAYCSHRPPYVPGKMKSHDEF

hide sequence

Protein Domains

Homeobox

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033363	UniProtKB/TrEMBL
	ENSSSCG00035076771	UniProtKB/TrEMBL
	ENSSSCG00055005729	UniProtKB/TrEMBL
	ENSSSCG00065074948	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000054100.3	UniProtKB/TrEMBL
	ENSSSCT00035104454.1	UniProtKB/TrEMBL
	ENSSSCT00055011135.1	UniProtKB/TrEMBL
	ENSSSCT00065103305.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
	Msh_Homeobox_Regulators	UniProtKB/TrEMBL
KEGG Report	ssc:100154934	UniProtKB/TrEMBL
NCBI Gene	VENTX	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN MSX	UniProtKB/TrEMBL
	HOMEOBOX PROTEIN MSX-3	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A287A6P3_PIG	UniProtKB/TrEMBL
	A0A8D1BG66	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1TW80	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A480JLL2	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD