VENTX (VENT homeobox) - Rat Genome Database

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Gene: VENTX (VENT homeobox) Chlorocebus sabaeus
Analyze
Symbol: VENTX
Name: VENT homeobox
RGD ID: 18629406
Description: ENCODES a protein that exhibits histone acetyltransferase binding (ortholog); histone acetyltransferase regulator activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein VENTX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604887,601,609 - 87,604,034 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VENTX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604887,601,609 - 87,604,034 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
VENTX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,237,855 - 133,241,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10133,237,855 - 133,241,928 (+)EnsemblGRCh38hg38GRCh38
GRCh3710135,051,359 - 135,055,432 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,901,398 - 134,905,423 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410134,940,288 - 134,944,314NCBI
Celera10128,461,096 - 128,465,122 (-)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,597,892 - 128,601,917 (+)NCBIHuRef
CHM1_110135,332,231 - 135,337,304 (+)NCBICHM1_1
T2T-CHM13v2.010134,193,345 - 134,197,419 (+)NCBIT2T-CHM13v2.0
Msx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,626,070 - 139,629,001 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,626,070 - 139,629,002 (-)EnsemblGRCm39 Ensembl
GRCm387140,046,157 - 140,049,088 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,046,157 - 140,049,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv377147,232,056 - 147,234,987 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,897,582 - 139,900,409 (-)NCBIMGSCv36mm8
Celera7139,844,251 - 139,847,182 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map785.04NCBI
Ventx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X90,707,273 - 90,708,315 (-)NCBIGRCr8
mRatBN7.2X86,483,893 - 86,484,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX86,483,893 - 86,484,954 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X93,064,417 - 93,067,181 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX93,064,686 - 93,065,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X92,964,258 - 92,966,244 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X110,278,093 - 110,284,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX87,622,250 - 87,623,796 (-)NCBICelera
Cytogenetic MapXq31NCBI
Ventx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547710,945,539 - 10,948,735 (-)NCBIChiLan1.0ChiLan1.0
VENTX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28145,358,390 - 145,361,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110145,363,746 - 145,367,128 (+)NCBINHGRI_mPanPan1
PanPan1.110134,144,329 - 134,149,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,144,411 - 134,149,277 (+)Ensemblpanpan1.1panPan2
VENTX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,836,688 - 40,840,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,836,403 - 40,840,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,892,938 - 40,896,442 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,474,254 - 41,477,565 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2841,474,254 - 41,477,129 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12840,956,347 - 40,960,315 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,946,496 - 40,949,807 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,349,114 - 41,352,425 (+)NCBIUU_Cfam_GSD_1.0
Ventx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,121,855 - 6,135,914 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648619,434,362 - 19,436,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VENTX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.114141,265,966 - 141,271,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,230,251 - 153,234,337 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ventx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473713,415,558 - 13,416,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 1 11 1
Below cutoff 12 6 15

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008019133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008019133   ⟹   XP_008017324
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604887,601,609 - 87,604,034 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008017324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014360
  ENSCSAP00000014360.1
RefSeq Acc Id: XP_008017324   ⟸   XM_008019133
- UniProtKB: A0A0D9S0H1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018352 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016450.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
NCBI Gene VENTX ENTREZGENE
PANTHER HOMEOBOX PROTEIN UniProtKB/TrEMBL
  HOMEOBOX PROTEIN VENTX UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A0D9S0H1 ENTREZGENE, UniProtKB/TrEMBL