DPEP2 (dipeptidase 2) - Rat Genome Database

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Gene: DPEP2 (dipeptidase 2) Sus scrofa
Analyze
Symbol: DPEP2
Name: dipeptidase 2
RGD ID: 14057831
Description: ENCODES a protein that exhibits exopeptidase activity (ortholog); INVOLVED IN leukotriene metabolic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN membrane (inferred); side of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100621778
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,593,546 - 28,599,051 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,593,542 - 28,599,076 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2626,020,128 - 26,025,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPEP2Pigautosomal dominant dyskeratosis congenita 6  ISORGD:13139628554872ClinVar Annotator: match by term: Dyskeratosis congenita, autosomal dominant 6ClinVarPMID:28492532
DPEP2PigChromosome 16q12 Duplication Syndrome  ISORGD:13139628554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPEP2Pigleukotriene D4 catabolic process involved_inIEAUniProtKB:Q9H4A9|ensembl:ENSP00000377430150520179 EnsemblGO_REF:0000107
DPEP2Pigleukotriene metabolic process involved_inISORGD:13139639068941 PMID:12738806UniProtPMID:12738806
DPEP2Pigproteolysis involved_inIEAInterPro:IPR000180|InterPro:IPR008257150520179 InterProGO_REF:0000002
DPEP2Pigproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPEP2Pigmembrane located_inIEAUniRule:UR000100391150520179 UniProtGO_REF:0000104
DPEP2Pigmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
DPEP2Pigside of membrane located_inIEAUniProtKB-KW:KW-0336150520179 UniProtGO_REF:0000043

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPEP2Pigdipeptidase activity enablesIEAUniProtKB-KW:KW-0224150520179 UniProtGO_REF:0000043
DPEP2Pigdipeptidase activity enablesIEAUniProtKB:Q9H4A9|ensembl:ENSP00000377430150520179 EnsemblGO_REF:0000107
DPEP2Pigdipeptidase activity enablesIEAEC:3.4.13.19150520179 UniProtGO_REF:0000003
DPEP2Pigdipeptidase activity enablesIEAARBA:ARBA00026909150520179 UniProtGO_REF:0000117
DPEP2Pigexopeptidase activity enablesISORGD:13139639068941 PMID:12738806MGIPMID:12738806
DPEP2Pighydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
DPEP2Pigmetal ion binding enablesIEAUniRule:UR000100391150520179 UniProtGO_REF:0000104
DPEP2Pigmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
DPEP2Pigmetallodipeptidase activity enablesIEAInterPro:IPR000180|InterPro:IPR008257150520179 InterProGO_REF:0000002
DPEP2Pigmetallopeptidase activity enablesIEAUniProtKB-KW:KW-0482150520179 UniProtGO_REF:0000043
DPEP2Pigpeptidase activity enablesIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
1 to 11 of 11 rows

PMID:14681463   PMID:22301074   PMID:30032202  



DPEP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,593,546 - 28,599,051 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,593,542 - 28,599,076 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2626,020,128 - 26,025,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DPEP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,987,390 - 68,000,619 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,987,394 - 68,000,586 (-)EnsemblGRCh38hg38GRCh38
GRCh371668,021,293 - 68,034,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,578,798 - 66,590,857 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,578,800 - 66,590,857NCBI
Celera1652,529,750 - 52,541,821 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,894,885 - 53,907,048 (-)NCBIHuRef
CHM1_11669,429,363 - 69,441,488 (-)NCBICHM1_1
T2T-CHM13v2.01673,783,178 - 73,796,408 (-)NCBIT2T-CHM13v2.0
Dpep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,711,577 - 106,732,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,711,577 - 106,723,055 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl8106,711,576 - 106,718,391 (-)EnsemblGRCm39 Ensembl
GRCm388105,984,945 - 106,006,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,984,944 - 105,991,759 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,984,945 - 105,996,423 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,508,957 - 108,520,323 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,874,186 - 108,885,552 (-)NCBIMGSCv36mm8
Celera8110,213,109 - 110,224,474 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.07NCBI
Dpep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,795,322 - 50,806,320 (-)NCBIGRCr8
mRatBN7.21933,883,557 - 33,896,487 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,885,478 - 33,891,954 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,701,008 - 40,707,443 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,354,322 - 41,360,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,653,038 - 43,659,469 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,964,098 - 37,975,154 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,964,105 - 37,970,537 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,831,084 - 48,851,920 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,832,224 - 35,838,659 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,837,105 - 35,843,540 (-)NCBI
Celera1933,313,021 - 33,319,456 (-)NCBICelera
Cytogenetic Map19q12NCBI
DPEP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,510,359 - 77,526,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,421,784 - 83,438,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,328,281 - 48,341,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,715,805 - 67,729,164 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,715,805 - 67,729,164 (-)Ensemblpanpan1.1panPan2
LOC489748
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,517,919 - 81,522,098 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,518,072 - 81,522,075 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,508,182 - 81,512,060 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,953,364 - 81,957,393 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,953,204 - 81,957,389 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,779,586 - 81,783,615 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,461,884 - 81,465,762 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,104,060 - 82,107,938 (+)NCBIUU_Cfam_GSD_1.0
DPEP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,439,237 - 59,447,400 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,440,951 - 59,447,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,172,991 - 22,187,738 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in DPEP2
124 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 3 22 3 5 10 10 22 1 6 1



Ensembl Acc Id: ENSSSCT00000027498   ⟹   ENSSSCP00000022909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl628,593,546 - 28,599,051 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059586   ⟹   ENSSSCP00000051448
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl628,593,542 - 28,599,368 (-)Ensembl
RefSeq Acc Id: XM_003355779   ⟹   XP_003355827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1628,593,542 - 28,599,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013988512   ⟹   XP_013843966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1628,593,542 - 28,598,998 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094120   ⟹   XP_020949779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1628,593,542 - 28,599,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094121   ⟹   XP_020949780
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1628,593,542 - 28,598,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001303628
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1628,593,765 - 28,599,076 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003355827   ⟸   XM_003355779
- Peptide Label: isoform X1
- UniProtKB: I3LFR7 (UniProtKB/TrEMBL),   A0A8D0SZK8 (UniProtKB/TrEMBL),   A0A8D1X056 (UniProtKB/TrEMBL),   A0A8D1IVT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949779   ⟸   XM_021094120
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013843966   ⟸   XM_013988512
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UFT4 (UniProtKB/TrEMBL),   A0A8D1X056 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949780   ⟸   XM_021094121
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSSSCP00000051448   ⟸   ENSSSCT00000059586



1 to 40 of 45 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000021105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015078228 UniProtKB/TrEMBL
  ENSSSCG00025064645 UniProtKB/TrEMBL
  ENSSSCG00030003489 UniProtKB/TrEMBL
  ENSSSCG00035039396 UniProtKB/TrEMBL
  ENSSSCG00040004320 UniProtKB/TrEMBL
  ENSSSCG00045031226 UniProtKB/TrEMBL
  ENSSSCG00050054717 UniProtKB/TrEMBL
  ENSSSCG00055010906 UniProtKB/TrEMBL
  ENSSSCG00060077789 UniProtKB/TrEMBL
  ENSSSCG00065069402 UniProtKB/TrEMBL
  ENSSSCG00070016595 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027498 ENTREZGENE
  ENSSSCT00000027498.4 UniProtKB/TrEMBL
  ENSSSCT00015105856.1 UniProtKB/TrEMBL
  ENSSSCT00015105892.1 UniProtKB/TrEMBL
  ENSSSCT00025088659.1 UniProtKB/TrEMBL
  ENSSSCT00030004552.1 UniProtKB/TrEMBL
  ENSSSCT00035052334.1 UniProtKB/TrEMBL
  ENSSSCT00040005687.1 UniProtKB/TrEMBL
  ENSSSCT00045053211.1 UniProtKB/TrEMBL
  ENSSSCT00050074640.1 UniProtKB/TrEMBL
  ENSSSCT00055021419.1 UniProtKB/TrEMBL
  ENSSSCT00060107229.1 UniProtKB/TrEMBL
  ENSSSCT00065095286.1 UniProtKB/TrEMBL
  ENSSSCT00070032716.1 UniProtKB/TrEMBL
Gene3D-CATH Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro Dipep_AS UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  Pept_M19 UniProtKB/TrEMBL
KEGG Report ssc:100621778 UniProtKB/TrEMBL
NCBI Gene LOC100621778 ENTREZGENE
PANTHER DIPEPTIDASE 2 UniProtKB/TrEMBL
  PTHR10443 UniProtKB/TrEMBL
Pfam Peptidase_M19 UniProtKB/TrEMBL
PROSITE RENAL_DIPEPTIDASE_1 UniProtKB/TrEMBL
  RENAL_DIPEPTIDASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF51556 UniProtKB/TrEMBL
UniProt A0A4X1UFT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SZK8 ENTREZGENE
1 to 40 of 45 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-03-04 DPEP2  dipeptidase 2  LOC100621778  dipeptidase 2  Symbol and/or name change 5135510 APPROVED