Symbol:
GATA6
Name:
GATA binding protein 6
RGD ID:
14047280
Description:
ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); double-stranded DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of miRNA transcription (ortholog); odontogenesis of dentin-containing tooth (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Aortic Coarctation (ortholog); atrial heart septal defect 9 (ortholog); atrioventricular septal defect (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH deoxynivalenol
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
GATA-6; GATA-binding factor 6; transcription factor GATA-6
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 107,282,849 - 107,314,626 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 107,282,709 - 107,314,725 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 99,758,773 - 99,790,688 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
GATA6 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 107,282,849 - 107,314,626 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 107,282,709 - 107,314,725 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 99,758,773 - 99,790,688 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GATA6 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 18 22,169,589 - 22,202,528 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 18 22,169,589 - 22,202,528 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 18 19,749,550 - 19,782,491 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 18 18,003,414 - 18,036,225 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 18 18,003,413 - 18,036,225 NCBI Celera 18 16,555,843 - 16,588,650 (+) NCBI Celera Cytogenetic Map 18 q11.2 NCBI HuRef 18 16,596,234 - 16,629,323 (+) NCBI HuRef CHM1_1 18 19,676,426 - 19,709,511 (+) NCBI CHM1_1 T2T-CHM13v2.0 18 22,354,655 - 22,387,589 (+) NCBI T2T-CHM13v2.0
Gata6 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 18 11,052,510 - 11,085,636 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 18 11,052,064 - 11,085,635 (+) Ensembl GRCm39 Ensembl GRCm38 18 11,052,510 - 11,085,636 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 18 11,052,064 - 11,085,635 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 18 11,052,508 - 11,085,633 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 18 11,052,506 - 11,085,628 (+) NCBI MGSCv36 mm8 Celera 18 11,079,782 - 11,114,690 (+) NCBI Celera Cytogenetic Map 18 A1 NCBI cM Map 18 5.63 NCBI
Gata6 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 18 2,460,909 - 2,492,322 (+) NCBI GRCr8 mRatBN7.2 18 2,188,121 - 2,219,532 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 18 2,188,121 - 2,219,532 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 18 2,424,615 - 2,456,020 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 18 3,212,329 - 3,243,727 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 18 2,426,505 - 2,457,910 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 18 2,415,821 - 2,447,087 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 18 2,416,552 - 2,446,338 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 18 2,436,500 - 2,465,966 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 18 2,504,264 - 2,534,648 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 18 2,504,263 - 2,534,648 (+) NCBI Celera 18 2,065,111 - 2,096,513 (+) NCBI Celera RH 3.4 Map 18 10.8 RGD Cytogenetic Map 18 p13 NCBI
GATA6 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 17 39,591,201 - 39,623,680 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 18 25,283,859 - 25,316,274 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 18 15,411,764 - 15,444,402 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 18 19,046,132 - 19,078,398 (+) NCBI panpan1.1 PanPan1.1 panPan2
GATA6 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 7 65,932,114 - 65,962,574 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 7 65,386,151 - 65,418,363 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 7 65,995,800 - 66,028,019 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 7 65,995,807 - 66,026,277 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 7 65,662,867 - 65,695,075 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 7 65,685,301 - 65,716,538 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 7 65,985,181 - 66,017,395 (-) NCBI UU_Cfam_GSD_1.0
Gata6 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404944 61,971,676 - 62,001,620 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936550 1,814,336 - 1,844,399 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936550 1,814,336 - 1,844,399 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GATA6 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 18 58,312,328 - 58,345,472 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 18 58,311,482 - 58,343,746 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666050 33,085,880 - 33,119,030 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gata6
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
10
4
3
3
5
14
12
3
3
6
1
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Ensembl Acc Id:
ENSSSCT00000004101 ⟹ ENSSSCP00000004009
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 6 107,282,849 - 107,314,626 (+) Ensembl
RefSeq Acc Id:
NM_214328 ⟹ NP_999493
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 107,284,327 - 107,314,644 (+) NCBI
Sequence:
GAGCTAGAAGTCAGCTTGGAGCAGCGCGGGACCGTGGATGGCCTTGACTGACGGCGGCTGGTGTCTGCCAAAGCGCTTAGGGGCCGCGGCTGCGGACGCCGGCGACTCCGGAGGCTTTCCAGCGCGGG
hide sequence
RefSeq Acc Id:
XM_005656112 ⟹ XP_005656169
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 107,282,709 - 107,314,644 (+) NCBI
Sequence:
GCCTGGCACCCTTCGGCGAGCGCTGTTTGTTTAGGGCTCGGTGAGTCCAATCAGGAGCGCAGGC
hide sequence
RefSeq Acc Id:
XM_005656113 ⟹ XP_005656170
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 107,282,960 - 107,314,725 (+) NCBI
Sequence:
TGCTCGAGCACCCCTCTTTCTTCCTCTGCACCCCCCACCCAACGCAGGCCCCTCGGCCTCGGCT
hide sequence
RefSeq Acc Id:
XM_005656114 ⟹ XP_005656171
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 107,283,654 - 107,314,725 (+) NCBI
Sequence:
CACTGCCTGTGCCCTGAAGGTCCGAGACTGCGGTCTCCGCCCAGGCGCCCCACCTCCCTGGGCT
hide sequence
RefSeq Acc Id:
XM_021093576 ⟹ XP_020949235
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 6 107,282,709 - 107,314,644 (+) NCBI
Sequence:
GCCTGGCACCCTTCGGCGAGCGCTGTTTGTTTAGGGCTCGGTGAGTCCAATCAGGAGCGCAGGCTGCAGTTTTCCGGCAGAGCAGTAAGAGGCGCCTCCTCTCTCCTTTTTATTCACCAGCAGCACCG
hide sequence
RefSeq Acc Id:
XP_005656169 ⟸ XM_005656112
- Peptide Label:
isoform X1
- UniProtKB:
F1SBC0 (UniProtKB/TrEMBL), A0A4X1VNF0 (UniProtKB/TrEMBL), A0A4X1VQI0 (UniProtKB/TrEMBL)
- Sequence:
MALTDGGWCLPKRLGAAAADAGDSGGFPAREPSTPPSPISSSSSCCSRGGERGPGGASNCRTPQLDTEAAAGPTARSLLLNPYASHPFGAPHGPSAPGISAPGGALSSWEDLLLFTDLDQAATASKLL
hide sequence
RefSeq Acc Id:
XP_020949235 ⟸ XM_021093576
- Peptide Label:
isoform X2
- UniProtKB:
A0A8D1KJG3 (UniProtKB/TrEMBL)
- Sequence:
MALTDGGWCLPKRLGAAAADAGDSGGFPAREPSTPPSPISSSSSCCSRGGERGPGGASNCRTPQLDTEAAAGPTARSLLLNPYASHPFGAPHGPSAPGISAPGGALSSWEDLLLFTDLDQAATASKLL
hide sequence
RefSeq Acc Id:
XP_005656170 ⟸ XM_005656113
- Peptide Label:
isoform X1
- UniProtKB:
F1SBC0 (UniProtKB/TrEMBL), A0A4X1VNF0 (UniProtKB/TrEMBL), A0A4X1VQI0 (UniProtKB/TrEMBL)
- Sequence:
MALTDGGWCLPKRLGAAAADAGDSGGFPAREPSTPPSPISSSSSCCSRGGERGPGGASNCRTPQ
hide sequence
RefSeq Acc Id:
XP_005656171 ⟸ XM_005656114
- Peptide Label:
isoform X1
- UniProtKB:
F1SBC0 (UniProtKB/TrEMBL), A0A4X1VNF0 (UniProtKB/TrEMBL), A0A4X1VQI0 (UniProtKB/TrEMBL)
- Sequence:
MALTDGGWCLPKRLGAAAADAGDSGGFPAREPSTPPSPISSSSSCCSRGGERGPGGASNCRTPQ
hide sequence
RefSeq Acc Id:
NP_999493 ⟸ NM_214328
- UniProtKB:
A0A4X1VQI0 (UniProtKB/TrEMBL)
- Sequence:
MALTDGGWCLPKRLGAAAADAGDSGGFPAREPSTPPSPISSSSSCCSRGGERGPGGASNCRTPQ
hide sequence
Ensembl Acc Id:
ENSSSCP00000004009 ⟸ ENSSSCT00000004101
