BIN3 (bridging integrator 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: BIN3 (bridging integrator 3) Sus scrofa
Analyze
Symbol: BIN3
Name: bridging integrator 3
RGD ID: 14038649
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN myoblast migration involved in skeletal muscle regeneration (ortholog); regulation of lamellipodium assembly (ortholog); skeletal muscle fiber development (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,874,300 - 6,889,133 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,874,281 - 6,926,950 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,354,594 - 7,403,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,874,300 - 6,889,133 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,874,281 - 6,926,950 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,354,594 - 7,403,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,620,418 - 22,669,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,620,418 - 22,669,148 (-)EnsemblGRCh38hg38GRCh38
GRCh37822,477,931 - 22,526,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,533,876 - 22,582,606 (-)NCBINCBI36Build 36hg18NCBI36
Build 34822,533,890 - 22,582,540NCBI
Celera821,439,785 - 21,488,652 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,021,078 - 21,070,156 (-)NCBIHuRef
CHM1_1822,680,143 - 22,728,895 (-)NCBICHM1_1
T2T-CHM13v2.0822,894,322 - 22,943,373 (-)NCBIT2T-CHM13v2.0
Bin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,337,538 - 70,375,413 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,337,554 - 70,375,655 (+)EnsemblGRCm39 Ensembl
GRCm381470,100,089 - 70,137,964 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,100,105 - 70,138,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,499,952 - 70,538,013 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,835,225 - 68,873,286 (+)NCBIMGSCv36mm8
Celera1467,640,607 - 67,678,945 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.21NCBI
Bin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,583,474 - 51,622,329 (+)NCBIGRCr8
mRatBN7.21545,173,725 - 45,212,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,173,732 - 45,212,604 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,291,591 - 49,330,460 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,403,086 - 50,441,954 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,262,410 - 47,301,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,799,339 - 51,818,697 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,779,839 - 51,818,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,525,398 - 55,544,850 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,519,884 - 50,539,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,535,662 - 50,555,015 (+)NCBI
Celera1544,872,895 - 44,892,253 (+)NCBICelera
Cytogenetic Map15p11NCBI
Bin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,042,885 - 46,085,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,042,885 - 46,085,029 (-)NCBIChiLan1.0ChiLan1.0
BIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,127,684 - 41,173,953 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,852,857 - 16,901,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,870,784 - 21,919,077 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,809,582 - 18,858,912 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,809,582 - 18,858,912 (-)Ensemblpanpan1.1panPan2
BIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,615,683 - 34,659,739 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,615,249 - 34,659,755 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,205,447 - 35,249,488 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02534,825,227 - 34,869,290 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2534,825,174 - 34,869,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12534,771,458 - 34,815,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,625,780 - 34,669,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02534,781,289 - 34,825,349 (+)NCBIUU_Cfam_GSD_1.0
BIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,700,664 - 20,748,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,701,390 - 20,725,210 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605221,478,444 - 21,526,859 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475818,121,125 - 18,163,044 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475818,121,125 - 18,163,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BIN3
2095 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1
Low 8 4 3 3 2 23 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000010556   ⟹   ENSSSCP00000010280
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,874,300 - 6,889,133 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066569   ⟹   ENSSSCP00000062955
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,874,530 - 6,885,404 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076983   ⟹   ENSSSCP00000066975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,874,308 - 6,923,340 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079725   ⟹   ENSSSCP00000065811
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,874,300 - 6,889,733 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085416   ⟹   ENSSSCP00000065484
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,874,533 - 6,905,429 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088696   ⟹   ENSSSCP00000065741
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,896,292 - 6,923,361 (-)Ensembl
RefSeq Acc Id: XM_003483383   ⟹   XP_003483431
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,874,281 - 6,923,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073387   ⟹   XP_020929046
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,874,281 - 6,926,950 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073388   ⟹   XP_020929047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,876,061 - 6,926,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073389   ⟹   XP_020929048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,874,281 - 6,923,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073390   ⟹   XP_020929049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,874,281 - 6,926,941 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003483431 (Get FASTA)   NCBI Sequence Viewer  
  XP_020929046 (Get FASTA)   NCBI Sequence Viewer  
  XP_020929047 (Get FASTA)   NCBI Sequence Viewer  
  XP_020929048 (Get FASTA)   NCBI Sequence Viewer  
  XP_020929049 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000010280
  ENSSSCP00000010280.4
  ENSSSCP00000062955.1
  ENSSSCP00005020613.1
  ENSSSCP00005020734.1
  ENSSSCP00015035682.1
  ENSSSCP00015035733.1
  ENSSSCP00015035827.1
  ENSSSCP00015035897.1
  ENSSSCP00015035950.1
  ENSSSCP00015036019.1
  ENSSSCP00025012949.1
  ENSSSCP00025012955.1
  ENSSSCP00025012967.1
  ENSSSCP00025012979.1
  ENSSSCP00030028384.1
  ENSSSCP00030028400.1
  ENSSSCP00030028436.1
  ENSSSCP00030028467.1
  ENSSSCP00035020134.1
  ENSSSCP00035020140.1
  ENSSSCP00035020143.1
  ENSSSCP00035020146.1
  ENSSSCP00040033353.1
  ENSSSCP00040033461.1
  ENSSSCP00040033497.1
  ENSSSCP00040033634.1
  ENSSSCP00045042163.1
  ENSSSCP00045042239.1
  ENSSSCP00045042355.1
  ENSSSCP00050047180.1
  ENSSSCP00050047218.1
  ENSSSCP00050047230.1
  ENSSSCP00055041016.1
  ENSSSCP00055041100.1
  ENSSSCP00055041157.1
  ENSSSCP00055041228.1
  ENSSSCP00060002305.1
  ENSSSCP00060002307.1
  ENSSSCP00060002312.1
  ENSSSCP00060002314.1
  ENSSSCP00065004578.1
  ENSSSCP00065004582.1
  ENSSSCP00065004591.1
  ENSSSCP00065004594.1
  ENSSSCP00070040166.1
  ENSSSCP00070040170.1
  ENSSSCP00070040176.1
RefSeq Acc Id: XP_020929046   ⟸   XM_021073387
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020929049   ⟸   XM_021073390
- Peptide Label: isoform X4
- UniProtKB: A0A8D1P6H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929048   ⟸   XM_021073389
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003483431   ⟸   XM_003483383
- Peptide Label: isoform X5
- UniProtKB: A0A480TRA0 (UniProtKB/TrEMBL),   A0A8D0UA32 (UniProtKB/TrEMBL),   A0A8D1P6H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929047   ⟸   XM_021073388
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000065741   ⟸   ENSSSCT00000088696
RefSeq Acc Id: ENSSSCP00000010280   ⟸   ENSSSCT00000010556
RefSeq Acc Id: ENSSSCP00000065811   ⟸   ENSSSCT00000079725
RefSeq Acc Id: ENSSSCP00000062955   ⟸   ENSSSCT00000066569
RefSeq Acc Id: ENSSSCP00000066975   ⟸   ENSSSCT00000076983
RefSeq Acc Id: ENSSSCP00000065484   ⟸   ENSSSCT00000085416
Protein Domains
BAR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021285 UniProtKB/TrEMBL
  ENSSSCG00015065189 UniProtKB/TrEMBL
  ENSSSCG00025022492 UniProtKB/TrEMBL
  ENSSSCG00030044493 UniProtKB/TrEMBL
  ENSSSCG00035037918 UniProtKB/TrEMBL
  ENSSSCG00040057067 UniProtKB/TrEMBL
  ENSSSCG00045034876 UniProtKB/TrEMBL
  ENSSSCG00050077568 UniProtKB/TrEMBL
  ENSSSCG00055025731 UniProtKB/TrEMBL
  ENSSSCG00060005265 UniProtKB/TrEMBL
  ENSSSCG00065008257 UniProtKB/TrEMBL
  ENSSSCG00070023850 UniProtKB/TrEMBL
  ENSSSCG00070023856 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010556 ENTREZGENE
  ENSSSCT00000010556.5 UniProtKB/TrEMBL
  ENSSSCT00000066569.2 UniProtKB/TrEMBL
  ENSSSCT00005033771.1 UniProtKB/TrEMBL
  ENSSSCT00005033959.1 UniProtKB/TrEMBL
  ENSSSCT00015087573.1 UniProtKB/TrEMBL
  ENSSSCT00015087676.1 UniProtKB/TrEMBL
  ENSSSCT00015087880.1 UniProtKB/TrEMBL
  ENSSSCT00015088035.1 UniProtKB/TrEMBL
  ENSSSCT00015088160.1 UniProtKB/TrEMBL
  ENSSSCT00015088343.1 UniProtKB/TrEMBL
  ENSSSCT00025030610.1 UniProtKB/TrEMBL
  ENSSSCT00025030626.1 UniProtKB/TrEMBL
  ENSSSCT00025030684.1 UniProtKB/TrEMBL
  ENSSSCT00025030727.1 UniProtKB/TrEMBL
  ENSSSCT00030062080.1 UniProtKB/TrEMBL
  ENSSSCT00030062117.1 UniProtKB/TrEMBL
  ENSSSCT00030062193.1 UniProtKB/TrEMBL
  ENSSSCT00030062252.1 UniProtKB/TrEMBL
  ENSSSCT00035050281.1 UniProtKB/TrEMBL
  ENSSSCT00035050303.1 UniProtKB/TrEMBL
  ENSSSCT00035050307.1 UniProtKB/TrEMBL
  ENSSSCT00035050311.1 UniProtKB/TrEMBL
  ENSSSCT00040077528.1 UniProtKB/TrEMBL
  ENSSSCT00040077742.1 UniProtKB/TrEMBL
  ENSSSCT00040077806.1 UniProtKB/TrEMBL
  ENSSSCT00040078067.1 UniProtKB/TrEMBL
  ENSSSCT00045060048.1 UniProtKB/TrEMBL
  ENSSSCT00045060149.1 UniProtKB/TrEMBL
  ENSSSCT00045060305.1 UniProtKB/TrEMBL
  ENSSSCT00050106801.1 UniProtKB/TrEMBL
  ENSSSCT00050106879.1 UniProtKB/TrEMBL
  ENSSSCT00050106910.1 UniProtKB/TrEMBL
  ENSSSCT00055051305.1 UniProtKB/TrEMBL
  ENSSSCT00055051420.1 UniProtKB/TrEMBL
  ENSSSCT00055051493.1 UniProtKB/TrEMBL
  ENSSSCT00055051590.1 UniProtKB/TrEMBL
  ENSSSCT00060006621.1 UniProtKB/TrEMBL
  ENSSSCT00060006626.1 UniProtKB/TrEMBL
  ENSSSCT00060006644.1 UniProtKB/TrEMBL
  ENSSSCT00060006647.1 UniProtKB/TrEMBL
  ENSSSCT00065011080.1 UniProtKB/TrEMBL
  ENSSSCT00065011088.1 UniProtKB/TrEMBL
  ENSSSCT00065011109.1 UniProtKB/TrEMBL
  ENSSSCT00065011114.1 UniProtKB/TrEMBL
  ENSSSCT00070047593.1 UniProtKB/TrEMBL
  ENSSSCT00070047597.1 UniProtKB/TrEMBL
  ENSSSCT00070047603.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  BIN3/RVS161-like UniProtKB/TrEMBL
  Bin3_BAR UniProtKB/TrEMBL
KEGG Report ssc:100153227 UniProtKB/TrEMBL
NCBI Gene BIN3 ENTREZGENE
PANTHER BRIDGING INTEGRATOR 3 UniProtKB/TrEMBL
  BRIDGING INTEGRATOR 3 UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
PROSITE BAR UniProtKB/TrEMBL
SMART BAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
UniProt A0A480TRA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VAS8_PIG UniProtKB/TrEMBL
  A0A4X1VH93_PIG UniProtKB/TrEMBL
  A0A5G2QLK4_PIG UniProtKB/TrEMBL
  A0A8D0IYD5_PIG UniProtKB/TrEMBL
  A0A8D0J286_PIG UniProtKB/TrEMBL
  A0A8D0UA32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J730_PIG UniProtKB/TrEMBL
  A0A8D1P6H2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1RMA2 UniProtKB/TrEMBL
VGNC ID VGNC:85826 ENTREZGENE