GAK (cyclin G associated kinase) - Rat Genome Database

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Pathways
Gene: GAK (cyclin G associated kinase) Sus scrofa
Analyze
Symbol: GAK
Name: cyclin G associated kinase
RGD ID: 13974522
Description: ENCODES a protein that exhibits cyclin binding (ortholog); INVOLVED IN cell development (ortholog); clathrin coat disassembly (ortholog); clathrin-dependent endocytosis (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); cervical cancer (ortholog); clear cell renal cell carcinoma (ortholog); FOUND IN clathrin-coated vesicle (inferred); cytosol (inferred); focal adhesion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-G-associated kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8240,822 - 296,956 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.18240,818 - 296,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28322 - 23,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GAK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8240,822 - 296,956 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.18240,818 - 296,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28322 - 23,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GAK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384849,277 - 932,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4849,275 - 932,411 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh374843,065 - 926,104 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364833,065 - 916,174 (-)NCBIBuild 36Build 36hg18NCBI36
Build 344832,895 - 915,805NCBI
Celera4750,124 - 863,080 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4813,547 - 897,389 (-)NCBIHuRef
CHM1_14842,855 - 925,384 (-)NCBICHM1_1
T2T-CHM13v2.04847,030 - 930,388 (-)NCBIT2T-CHM13v2.0
Gak
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,716,973 - 108,777,643 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,717,277 - 108,777,621 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385108,569,107 - 108,629,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,569,411 - 108,629,755 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv375108,998,433 - 109,058,758 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365108,809,716 - 108,870,041 (-)NCBIMGSCv36mm8
Celera5105,690,922 - 105,751,237 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.2NCBI
Gak
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,234,272 - 1,308,492 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl141,234,266 - 1,323,974 (+)EnsemblGRCr8
mRatBN7.2141,089,853 - 1,164,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,089,866 - 1,216,398 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14989,603 - 1,063,129 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,291,381 - 2,364,893 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014988,076 - 1,061,600 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd14982,267 - 1,055,786 (+)NCBI
Lyon_Normotensive14981,189 - 1,054,708 (+)NCBI
Lyon_Hypertensive14980,140 - 1,053,656 (+)NCBI
F344_StmMcwi141,261,860 - 1,335,142 (+)NCBI
Rnor_6.0142,100,104 - 2,174,332 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,100,106 - 2,174,318 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0142,095,637 - 2,168,946 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,630,890 - 1,710,373 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera141,129,213 - 1,203,494 (+)NCBICelera
RGSC_v3.1141,630,889 - 1,710,373 (+)NCBI
Cytogenetic Map14p22NCBI
Gak
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514387,179 - 434,077 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_004955514391,305 - 434,198 (-)NCBIChiLan1.0ChiLan1.0
GAK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,164,993 - 1,262,302 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,121,494 - 1,228,106 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04952,474 - 1,049,612 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14883,096 - 967,473 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4883,096 - 967,473 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
GAK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,575,537 - 91,630,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,574,751 - 91,630,663 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha394,040,859 - 94,095,630 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0392,574,135 - 92,629,637 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,573,478 - 92,631,424 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,745,453 - 91,800,982 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,799,161 - 91,854,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,183,004 - 92,238,533 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap19428,478 - 475,175 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440528568,552,411 - 68,599,133 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,253,471 - 22,300,932 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,254,109 - 22,300,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12748,884,203 - 48,972,379 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660514,214,320 - 4,318,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12747,852,548 - 47,935,691 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,852,588 - 47,935,874 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Gak
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475526,208,207 - 26,250,937 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462475526,208,334 - 26,250,533 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Gak
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11118,350,869 - 18,415,409 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in GAK
922 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021100830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021100837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_084971154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_084971155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_014812003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_014812004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_014812006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK397845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01016566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JBREVY020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000030183   ⟹   ENSSSCP00000026316
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8240,824 - 296,936 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000041624   ⟹   ENSSSCP00000057438
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8240,821 - 296,958 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053029   ⟹   ENSSSCP00000042161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8245,195 - 296,936 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000068188   ⟹   ENSSSCP00000067267
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8240,821 - 294,270 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000078495   ⟹   ENSSSCP00000064870
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8245,492 - 296,936 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000083246   ⟹   ENSSSCP00000066825
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8240,822 - 296,956 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000090161   ⟹   ENSSSCP00000071308
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8240,822 - 281,313 (-)Ensembl
RefSeq Acc Id: XM_021100830   ⟹   XP_020956489
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 296,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100831   ⟹   XP_020956490
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 296,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100832   ⟹   XP_020956491
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 293,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100833   ⟹   XP_020956492
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 279,980 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100834   ⟹   XP_020956493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 279,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100835   ⟹   XP_020956494
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18243,619 - 296,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100836   ⟹   XP_020956495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 296,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100837   ⟹   XP_020956496
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18240,818 - 296,934 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020956490   ⟸   XM_021100831
- Peptide Label: isoform X2
- UniProtKB: A0A5G2R4P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956489   ⟸   XM_021100830
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QQ26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956496   ⟸   XM_021100837
- Peptide Label: isoform X7
- UniProtKB: A0A5G2R4P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956495   ⟸   XM_021100836
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020956491   ⟸   XM_021100832
- Peptide Label: isoform X3
- UniProtKB: I3LQD7 (UniProtKB/TrEMBL),   A0A5G2R4P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956492   ⟸   XM_021100833
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020956493   ⟸   XM_021100834
- Peptide Label: isoform X4
- UniProtKB: A0A5G2R4P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956494   ⟸   XM_021100835
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSSSCP00000064870   ⟸   ENSSSCT00000078495
Ensembl Acc Id: ENSSSCP00000066825   ⟸   ENSSSCT00000083246
Ensembl Acc Id: ENSSSCP00000067267   ⟸   ENSSSCT00000068188
Ensembl Acc Id: ENSSSCP00000026316   ⟸   ENSSSCT00000030183
Ensembl Acc Id: ENSSSCP00000071308   ⟸   ENSSSCT00000090161
Ensembl Acc Id: ENSSSCP00000057438   ⟸   ENSSSCT00000041624
Ensembl Acc Id: ENSSSCP00000042161   ⟸   ENSSSCT00000053029

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021289 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030183.4 UniProtKB/TrEMBL
  ENSSSCT00000053029.3 UniProtKB/TrEMBL
  ENSSSCT00000078495.2 UniProtKB/TrEMBL
  ENSSSCT00000083246.2 UniProtKB/TrEMBL
  ENSSSCT00000090161.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  2.60.40.1110 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
  Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro C2_domain_sf UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
  Tensin_C2-dom UniProtKB/TrEMBL
  Tensin_phosphatase UniProtKB/TrEMBL
NCBI Gene GAK ENTREZGENE
PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED UniProtKB/TrEMBL
  CYCLIN G ASSOCIATED KINASE UniProtKB/TrEMBL
  CYCLIN-G-ASSOCIATED KINASE UniProtKB/TrEMBL
  SERINE/THREONINE PROTEIN KINASE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  PTEN_C2 UniProtKB/TrEMBL
PROSITE C2_TENSIN UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
  PPASE_TENSIN UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART PTEN_C2 UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A287ADR9_PIG UniProtKB/TrEMBL
  A0A5G2QLG1_PIG UniProtKB/TrEMBL
  A0A5G2QQ26 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R4P6 ENTREZGENE, UniProtKB/TrEMBL
  I3LQD7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QQS5 UniProtKB/TrEMBL
VGNC ID VGNC:88320 ENTREZGENE