PPIE (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 6 | 95,548,652 - 95,579,964 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 95,548,582 - 95,566,470 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 88,636,947 - 88,652,062 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PPIE (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 1 | 39,738,882 - 39,763,914 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 39,692,182 - 39,763,914 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 40,204,554 - 40,229,586 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 39,977,117 - 40,002,173 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 39,873,622 - 39,888,471 | NCBI | | | | | Celera | 1 | 38,486,281 - 38,511,350 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | p34.2 | NCBI | | | | | HuRef | 1 | 38,323,206 - 38,348,301 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 40,319,960 - 40,345,027 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 39,608,324 - 39,633,355 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Ppie (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 4 | 123,020,907 - 123,033,783 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 123,020,908 - 123,033,744 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 123,127,114 - 123,139,990 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 123,127,115 - 123,139,951 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 4 | 122,804,368 - 122,817,184 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 122,629,428 - 122,642,244 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 121,458,036 - 121,470,830 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | D2.2 | NCBI | | | | | cM Map | 4 | 57.39 | NCBI | | | | |
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Ppie (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 5 | 140,691,285 - 140,704,347 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 135,406,172 - 135,419,332 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 135,406,176 - 135,419,235 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 5 | 138,112,881 - 138,125,632 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 5 | 139,882,852 - 139,895,603 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 5 | 139,889,979 - 139,902,730 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 5 | 140,822,141 - 140,835,244 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 140,822,141 - 140,834,959 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 144,612,621 - 144,625,724 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 142,445,476 - 142,455,367 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 5 | 142,447,283 - 142,460,331 (-) | NCBI | | | | | Celera | 5 | 133,948,954 - 133,958,845 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q36 | NCBI | | | | |
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Ppie (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955452 | 17,242,286 - 17,254,860 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955452 | 17,242,255 - 17,256,776 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PPIE (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 1 | 187,057,737 - 187,129,294 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 186,195,378 - 186,267,325 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 39,029,412 - 39,054,500 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 40,355,598 - 40,373,495 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 40,355,598 - 40,380,472 (+) | Ensembl | panpan1.1 | | panPan2 | |
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PPIE (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 15 | 3,156,067 - 3,173,028 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 15 | 3,153,628 - 3,172,988 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 15 | 3,412,962 - 3,429,449 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 15 | 3,274,186 - 3,290,772 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 15 | 3,271,923 - 3,290,799 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 15 | 3,150,413 - 3,166,970 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 15 | 3,211,469 - 3,228,010 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 15 | 3,227,023 - 3,243,593 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Ppie (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405058 | 55,777,744 - 55,792,075 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936474 | 21,602,521 - 21,619,655 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936474 | 21,602,555 - 21,616,857 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
PPIE (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 20 | 93,345,338 - 93,360,739 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 93,345,400 - 93,360,398 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666033 | 23,687,722 - 23,703,115 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ppie (Heterocephalus glaber - naked mole-rat) |
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