Ppie (peptidylprolyl isomerase E) - Rat Genome Database

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Gene: Ppie (peptidylprolyl isomerase E) Ictidomys tridecemlineatus
Analyze
Symbol: Ppie
Name: peptidylprolyl isomerase E
RGD ID: 12539502
Description: ENCODES a protein that exhibits cyclosporin A binding (inferred); mRNA binding (inferred); peptidyl-prolyl cis-trans isomerase activity (inferred); INVOLVED IN mRNA splicing, via spliceosome (inferred); positive regulation of viral genome replication (inferred); protein folding (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peptidyl-prolyl cis-trans isomerase E; peptidylprolyl isomerase E, transcript variant X1; peptidylprolyl isomerase E, transcript variant X2; peptidylprolyl isomerase E, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,777,744 - 55,792,075 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,602,521 - 21,619,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,602,555 - 21,616,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppie
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,777,744 - 55,792,075 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,602,521 - 21,619,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,602,555 - 21,616,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPIE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38139,738,882 - 39,763,914 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl139,692,182 - 39,763,914 (+)EnsemblGRCh38hg38GRCh38
GRCh37140,204,554 - 40,229,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36139,977,117 - 40,002,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 34139,873,622 - 39,888,471NCBI
Celera138,486,281 - 38,511,350 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef138,323,206 - 38,348,301 (+)NCBIHuRef
CHM1_1140,319,960 - 40,345,027 (+)NCBICHM1_1
T2T-CHM13v2.0139,608,324 - 39,633,355 (+)NCBIT2T-CHM13v2.0
Ppie
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,020,907 - 123,033,783 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4123,020,908 - 123,033,744 (-)EnsemblGRCm39 Ensembl
GRCm384123,127,114 - 123,139,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,127,115 - 123,139,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv374122,804,368 - 122,817,184 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,629,428 - 122,642,244 (-)NCBIMGSCv36mm8
Celera4121,458,036 - 121,470,830 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.39NCBI
Ppie
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,691,285 - 140,704,347 (-)NCBIGRCr8
mRatBN7.25135,406,172 - 135,419,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,406,176 - 135,419,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,112,881 - 138,125,632 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05139,882,852 - 139,895,603 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05139,889,979 - 139,902,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05140,822,141 - 140,835,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5140,822,141 - 140,834,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,612,621 - 144,625,724 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,445,476 - 142,455,367 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,447,283 - 142,460,331 (-)NCBI
Celera5133,948,954 - 133,958,845 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ppie
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,242,286 - 17,254,860 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,242,255 - 17,256,776 (+)NCBIChiLan1.0ChiLan1.0
PPIE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,057,737 - 187,129,294 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,195,378 - 186,267,325 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,029,412 - 39,054,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,355,598 - 40,373,495 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,355,598 - 40,380,472 (+)Ensemblpanpan1.1panPan2
PPIE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1153,156,067 - 3,173,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl153,153,628 - 3,172,988 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,412,962 - 3,429,449 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0153,274,186 - 3,290,772 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl153,271,923 - 3,290,799 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1153,150,413 - 3,166,970 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0153,211,469 - 3,228,010 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0153,227,023 - 3,243,593 (-)NCBIUU_Cfam_GSD_1.0
PPIE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,548,652 - 95,579,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,548,582 - 95,566,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,636,947 - 88,652,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPIE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,345,338 - 93,360,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2093,345,400 - 93,360,398 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603323,687,722 - 23,703,115 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppie
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,222,047 - 22,237,113 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,222,103 - 22,237,113 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010444   ⟹   ENSSTOP00000009372
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647421,603,189 - 21,616,040 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000038870   ⟹   ENSSTOP00000029608
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647421,602,521 - 21,619,655 (+)Ensembl
RefSeq Acc Id: XM_005317858   ⟹   XP_005317915
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505855,777,744 - 55,791,601 (+)NCBI
SpeTri2.0NW_00493647421,602,555 - 21,616,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288435   ⟹   XP_040144369
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505855,777,744 - 55,792,075 (+)NCBI
RefSeq Acc Id: XM_040288436   ⟹   XP_040144370
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505855,777,774 - 55,792,075 (+)NCBI
RefSeq Acc Id: XM_040288437   ⟹   XP_040144371
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505855,777,881 - 55,792,075 (+)NCBI
RefSeq Acc Id: XP_005317915   ⟸   XM_005317858
- Peptide Label: isoform X3
- UniProtKB: A0A287D7U8 (UniProtKB/TrEMBL),   I3MFH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144369   ⟸   XM_040288435
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040144370   ⟸   XM_040288436
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144371   ⟸   XM_040288437
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000009372   ⟸   ENSSTOT00000010444
Ensembl Acc Id: ENSSTOP00000029608   ⟸   ENSSTOT00000038870
Protein Domains
PPIase cyclophilin-type   RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010445 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010444.3 UniProtKB/TrEMBL
  ENSSTOT00000038870.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro Cyclophilin-like_dom_sf UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_CS UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_dom UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PPIE UniProtKB/TrEMBL
  PPIE_RRM UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Ppie ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE UniProtKB/TrEMBL
  PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H UniProtKB/TrEMBL
Pfam Pro_isomerase UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PIRSF PPI_cyclophilin_E UniProtKB/TrEMBL
PRINTS CSAPPISMRASE UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF50891 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A287D7U8 ENTREZGENE, UniProtKB/TrEMBL
  I3MFH8 ENTREZGENE, UniProtKB/TrEMBL