SOX11 (SRY-box transcription factor 11)

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Gene: SOX11 (SRY-box transcription factor 11) Sus scrofa

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Symbol:

SOX11

Name:

SRY-box transcription factor 11

RGD ID:

13947265

Description:

ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN closure of optic fissure (ortholog); cornea development in camera-type eye (ortholog); embryonic digestive tract morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 9 (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SRY-box 11; transcription factor SOX-11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	129,798,854 - 129,800,197 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	129,797,438 - 129,800,568 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	138,751,621 - 138,754,531 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

Coffin-Siris syndrome (ISO)

Coffin-Siris syndrome 9 (ISO)

Craniosynostosis Syndrome, Autosomal Recessive (ISO)

genetic disease (ISO)

hypogonadism (ISO)

hypogonadotropic hypogonadism (ISO)

Klinefelter syndrome (ISO)

Neoplasm Invasiveness (ISO)

Pituitary Stalk Interruption Syndrome (ISO)

Salivary Gland Neoplasms (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IBA)

camera-type eye morphogenesis (IBA)

cell differentiation (IEA)

closure of optic fissure (IEA,ISS)

cornea development in camera-type eye (IEA,ISS)

embryonic digestive tract morphogenesis (IEA,ISS)

embryonic skeletal system morphogenesis (IEA,ISS)

eyelid development in camera-type eye (IEA,ISS)

glial cell development (IEA)

glial cell proliferation (IEA,ISS)

hard palate development (IEA,ISS)

kidney development (ISO)

lens morphogenesis in camera-type eye (IEA,ISS)

lung morphogenesis (IEA,ISS)

negative regulation of gene expression (IEA,ISS)

negative regulation of glial cell proliferation (IEA,ISS)

negative regulation of lymphocyte proliferation (IEA)

negative regulation of transcription by RNA polymerase II (IBA,IEA,ISS)

nervous system development (IEA,ISS)

neuroepithelial cell differentiation (IEA,ISS)

neuron differentiation (IBA,IEA)

noradrenergic neuron differentiation (IEA,ISS)

oligodendrocyte development (ISO)

outflow tract morphogenesis (IEA,ISS)

positive regulation of BMP signaling pathway (IEA,ISS)

positive regulation of DNA-templated transcription (IEA)

positive regulation of gene expression (IEA,ISS)

positive regulation of hippo signaling (IEA,ISS)

positive regulation of hormone secretion (IEA,ISS)

positive regulation of lens epithelial cell proliferation (IEA,ISS)

positive regulation of neurogenesis (IEA,ISS)

positive regulation of neuron differentiation (IEA,ISS)

positive regulation of ossification (IEA,ISS)

positive regulation of osteoblast differentiation (IEA,ISS)

positive regulation of stem cell proliferation (IEA,ISS)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

regulation of transforming growth factor beta receptor signaling pathway (IEA)

skeletal muscle cell differentiation (IEA,ISO)

soft palate development (IEA,ISS)

spinal cord development (IEA,ISS)

sympathetic nervous system development (IEA,ISS)

ventricular septum morphogenesis (IEA,ISS)

Cellular Component

nucleoplasm (IEA)

nucleus (IBA,IEA,ISS)

plasma membrane (IEA)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IEA,ISS)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IBA,IEA,ISS)

DNA-binding transcription factor activity (IEA,ISO,ISS)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA)

transcription cis-regulatory region binding (IEA,ISS)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SOX11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	129,798,854 - 129,800,197 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	129,797,438 - 129,800,568 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	138,751,621 - 138,754,531 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SOX11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	5,692,384 - 5,701,385 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	5,692,384 - 5,701,385 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	5,832,516 - 5,841,517 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	5,750,250 - 5,758,968 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	5,783,396 - 5,792,114	NCBI
Celera	2	5,748,512 - 5,756,851 (+)	NCBI		Celera
Cytogenetic Map	2	p25.2	NCBI
HuRef	2	5,676,397 - 5,685,112 (+)	NCBI		HuRef
CHM1_1	2	5,762,093 - 5,770,810 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	5,713,811 - 5,722,812 (+)	NCBI		T2T-CHM13v2.0

Sox11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	27,384,267 - 27,392,717 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	27,384,263 - 27,392,573 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	27,334,268 - 27,342,718 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	27,334,264 - 27,342,574 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	28,019,133 - 28,027,583 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	27,921,484 - 27,928,980 (-)	NCBI		MGSCv36	mm8
Celera	12	28,811,290 - 28,819,758 (-)	NCBI		Celera
Cytogenetic Map	12	A2	NCBI
cM Map	12	9.95	NCBI

Sox11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	49,736,773 - 49,738,794 (-)	NCBI		GRCr8
mRatBN7.2	6	44,008,333 - 44,010,354 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	44,008,340 - 44,010,354 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	44,315,859 - 44,317,880 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	44,630,739 - 44,632,760 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	44,063,910 - 44,065,931 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	46,629,967 - 46,631,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	46,629,974 - 46,631,983 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	55,343,067 - 55,345,088 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	45,141,366 - 45,143,387 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	45,144,498 - 45,146,513 (-)	NCBI
Celera	6	43,252,857 - 43,254,878 (-)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

Sox11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955487	2,679,145 - 2,680,521 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955487	2,678,961 - 2,680,869 (-)	NCBI	ChiLan1.0	ChiLan1.0

SOX11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	120,808,899 - 120,820,381 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	120,812,876 - 120,824,358 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	5,699,738 - 5,711,210 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	5,840,399 - 5,841,762 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SOX11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	17	3,570,850 - 3,572,822 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	3,680,433 - 3,682,409 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	3,680,517 - 3,682,010 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	3,573,068 - 3,575,034 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	3,576,503 - 3,578,454 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	3,580,950 - 3,582,922 (+)	NCBI		UU_Cfam_GSD_1.0

Sox11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	9,632,081 - 9,635,331 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004937107	203,120 - 207,185 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOX11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	101,982,551 - 101,991,305 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	101,989,895 - 101,991,220 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	10,348,860 - 10,357,867 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sox11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624846	4,044,893 - 4,046,248 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624846	4,043,010 - 4,046,660 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SOX11
44 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
3	3	20	1	1	5	5	20	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003354937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP245498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000009462 ⟹ ENSSSCP00000009219

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	129,798,854 - 129,800,197 (-)	Ensembl

RefSeq Acc Id:

XM_003354937 ⟹ XP_003354985

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	129,797,438 - 129,800,568 (-)	NCBI

Sequence:

show sequence

GGAGCGCGCGCGCCTGGGAGTGCTCGGGGTTCGGCGCTCGCGGCGGGAGCCACGAGCCGGAGAG
AGGGGTCCCGGGCTGCTTCGACCGCCACCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCTCTCCGGTCGGGGCTGCAGCTCCCCGCGCGCGGGCGGCCGTCGCCGCCGAA
GCCGCCGTAGCCGCTGTGTGCAGCCTGGAAGGGGGGGCGGGGGGGAGGGGGGGAGCCGCAGACG
CGGGGTGCCGAGGACTTTGCAACTTGCCCGGGAAGGTGGAGGGGCGAGAGGGGGAGGGGGAGTT
CCGCACGAGACCGAGCGGCCCGGGTTGGAGCGCCCAGCCCCAAAGCGGATCATGGTGCAGCAGG
CCGAGAGCTTGGAAGCGGAGAGCAACCTGCCCCGGGAGGCGCTGGACACGGAGGAGGGTGAATT
CATGGCTTGCAGCCCGGTGGCCCTGGACGAGAGCGACCCGGACTGGTGCAAGACGGCGTCGGGC
CATATCAAGAGGCCGATGAACGCGTTCATGGTGTGGTCCAAGATCGAGCGCAGGAAGATCATGG
AACAGTCTCCGGACATGCATAACGCTGAGATCTCCAAGAGGCTGGGCAAGCGGTGGAAAATGCT
GAAGGACAGCGAGAAGATCCCGTTCATCCGGGAGGCGGAGCGGCTGCGGCTCAAGCACATGGCC
GACTACCCCGACTACAAGTACCGGCCCCGGAAAAAGCCCAAAATGGACCCCTCGGCCAAGCCCA
GCGCCAGCCAGAGCCCCGAGAAGAACGCGGCGGGCGGCGGCAGCGGGGGCGCGGGCGGCGGCGC
GGGCGGCGCCAAGACCTCCAAGGGCTCGAGCAAGAAATGCGGCAAGCTCAAGGCCCCCGCGGCC
CCCGCGGCCGGCGGCGCCAAGGCGGGCGCGGGCAAGGCGGCCCAGCCGGGGGACTACGGCGGCG
CGGGCGACGACTACGTGCTCGGCAGCTTGCGCGTGAGCGGGGCGGGCGGCGGCGGCGCGGGCAA
GACGGTCAAGTGCGTGTTCCTGGATGAGGACGACGAGGACGACGAGGACGAGGACGAGCTGCAG
CTGCGGATCAAGCAGGAGGCGGACGAGGAGGACGAGGAGCCGCCGCACCCGCAGCTCCTGCAGC
CTCCCGGGCAGCAGCCGCCGCAGCTGCTGAGACGCTACAACGTCGCCAAAGTGCCCGCCAGCCC
CACGCTGAGCAGCTCGGCCGAGTCCCCCGAGGGCGCGAGCCTCTACGACGAGGTGCGGGCCGGC
GCGACCTCAGGCGCCGGGGGCGGCAGCCGCCTCTACTACAGCTTCAAGAACATCACCAAGCAGC
ACCCGCCGCCGCTGGCGCAGCCCGCGCTCTCGCCCGCGTCCTCGCGCTCTGTCTCCACCTCCTC
GTCCTCCTCGTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCGGTGAGGACGCCGACGACCTG
ATGTTCGACCTGAGCTTGAATTTCTCCCAAAGCGCGCACAGCGCCAGCGAGCAGCAGCTGGGGG
GCGGCGCGGCGGCGGGGAACCTGTCCTTGTCTCTGGTGGATAAGGATTTGGATTCGTTCAGCGA
GGGCAGCCTGGGCTCCCACTTCGAATTCCCCGACTACTGCACGCCGGAGCTGAGCGAGATGATC
GCGGGGGACTGGCTGGAGGCGAACTTCTCCGACTTGGTGTTCACGTATTGAGAGAGGCGCCCCG
CTTCTCGCTCTTTCTCTCGGCGGGTGCAGAGCAGGGTTCCTTGGGAGGAAGGTGGTCGTGATGA
TGCTGATGATAGCGATGGTGGTGGTGGTGTCGATGGTGGTGGTGGTAGGGTGGAGGGGGAGAGA
AGATGCTGATATTGATATGATGTCGTGACACAAAGAAATTGAAAAAGATGAAAATTTTGGTGGA
GTTAAAGTGAAATGAGTAGTTTTAAAACATTTTTTCCTGTCCTTTTTTTGTCCCCCCCCTCCTT
TATCGTGTCTCAAGGTAGTTGCATACCTAGTCTGGAGTTGTGATTTTTTTTTTTTCCCCCTCAA
ATGTGTTTTTGTAATTACGATTTCTTTTTCCTGAAATTCGCGATGGCAACAAAGGCGGAGGGGA
CAGGGCGGGGGAGGGGAGGGAGGACCCGCTCCGGAAGGCGCTGTTGGAAGCTTGTTGGTCTTTG
AAGTCTGGAAGACGTCTGCAGAGGATCGACCCTTTGGCAGCACAACTGTTAACGCTAGGGAGTT
GGTTGGAGATTTTTGGGGTTTTTTTCTTAAGCGATCTTAAAGAACTGGTGATTTTTAAAAAAAC
AGACAAAAAAAAAACAACAAACAAACAGAAACAAAAAAAGGGACCATGGCAAATTTTTTATTTT
ATTTTATTTTTTGGAGGGAGAAAACTGATGTCTTCTATGCATCCGATTCTTAACAAAACTGCAG
GGAGCTTGAAAAAATGCAGACTGTACAAACGCTTACAAAAAAAAAAAAAAAACTGTGAACTGAC
TTAAGATCAGAGTTTACTTTTCAGATCAAATTGTTTATGGTTTTACAAATGTGATTTCTACTTG
CCAACTTTTTTTTTGTAACTCGTTCCCTTATACCTCCTTGATTGAATACCAGACAGCCTAGACC
TCAGTACAAAAGGTATTGAAACATTTTTGATACATAACAGACCTCAGTCTTTTTTAAAAATTAA
TATATTTTCAGGCGTATTTTTGTACAGTGAAAAGGGAACATTCTTGCTGTGTTTTTTCAGTAAG
ACTTTCAGGCACTTCTTCCCTTTTGATTTCTTTTTTTCCTCTGTTTTTTAGCATGCAAGTATGT
TGGTACGTTATGTCCTGGTTTTAAAAAGGATTAAAATTTTAAAATAATCCTTGCATCTAAAGGC
CTTGTGGTTTAAAAAAAAAAAAAAGCAAACTTTTTTTTGTACAGCTATAGTAGAGATTTGTTCA
ATATTTGTAGGTAAAGATTTATTGAAAATGGTGATATAGACCTCAGAGCTGTTATCTTAGTTTA
AAGATTGTATATGTACTGTACTATAGTAGGACTATGTATCTCATACGCTGTGATATGTGGATGG
GGCCCCAGATGGAAGGTTTGAAACTGGATTCTCGATTTTTAGCAAAAAGGAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003354985	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000009219
	ENSSSCP00000009219.2
	ENSSSCP00015010557.1
	ENSSSCP00025024864.1
	ENSSSCP00030041563.1
	ENSSSCP00035002334.1
	ENSSSCP00040036439.1
	ENSSSCP00045002785.1
	ENSSSCP00050012260.1
	ENSSSCP00055049379.1
	ENSSSCP00060039076.1
	ENSSSCP00065040440.1

RefSeq Acc Id:

XP_003354985 ⟸ XM_003354937

- UniProtKB:

F1S9L1 (UniProtKB/TrEMBL), A0A8D0S848 (UniProtKB/TrEMBL), A0A8D0MYU5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIER
RKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKMDP
SAKPSASQSPEKNAAGGGSGGAGGGAGGAKTSKGSSKKCGKLKAPAAPAAGGAKAGAGKAAQPG
DYGGAGDDYVLGSLRVSGAGGGGAGKTVKCVFLDEDDEDDEDEDELQLRIKQEADEEDEEPPHP
QLLQPPGQQPPQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAGATSGAGGGSRLYYSFKN
ITKQHPPPLAQPALSPASSRSVSTSSSSSSSGSSSSSSSGGEDADDLMFDLSLNFSQSAHSASE
QQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY

hide sequence

Ensembl Acc Id:

ENSSSCP00000009219 ⟸ ENSSSCT00000009462

Protein Domains

HMG box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000008649	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015020437	UniProtKB/TrEMBL
	ENSSSCG00025043326	UniProtKB/TrEMBL
	ENSSSCG00030064540	UniProtKB/TrEMBL
	ENSSSCG00035005335	UniProtKB/TrEMBL
	ENSSSCG00040061481	UniProtKB/TrEMBL
	ENSSSCG00045002787	UniProtKB/TrEMBL
	ENSSSCG00050021927	UniProtKB/TrEMBL
	ENSSSCG00055030821	UniProtKB/TrEMBL
	ENSSSCG00060066094	UniProtKB/TrEMBL
	ENSSSCG00065067333	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000009462	ENTREZGENE
	ENSSSCT00000009462.5	UniProtKB/TrEMBL
	ENSSSCT00015026979.1	UniProtKB/TrEMBL
	ENSSSCT00025058704.1	UniProtKB/TrEMBL
	ENSSSCT00030090199.1	UniProtKB/TrEMBL
	ENSSSCT00035006692.1	UniProtKB/TrEMBL
	ENSSSCT00040083635.1	UniProtKB/TrEMBL
	ENSSSCT00045004359.1	UniProtKB/TrEMBL
	ENSSSCT00050029554.1	UniProtKB/TrEMBL
	ENSSSCT00055061522.1	UniProtKB/TrEMBL
	ENSSSCT00060090263.1	UniProtKB/TrEMBL
	ENSSSCT00065092411.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	HMG_box_dom	UniProtKB/TrEMBL
	HMG_box_dom_sf	UniProtKB/TrEMBL
	SOX-11/4	UniProtKB/TrEMBL
	SRY-related_HMG-box_TFs	UniProtKB/TrEMBL
KEGG Report	ssc:100514639	UniProtKB/TrEMBL
NCBI Gene	SOX11	ENTREZGENE
PANTHER	PTHR10270:SF113	UniProtKB/TrEMBL
	SOX TRANSCRIPTION FACTOR	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
PIRSF	SOX-12/11/4a	UniProtKB/TrEMBL
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47095	UniProtKB/TrEMBL
UniProt	A0A8D0MYU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0S848	ENTREZGENE, UniProtKB/TrEMBL
	F1S9L1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93351	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-06-18	SOX11	SRY-box transcription factor 11	SOX11	SRY-box 11	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM