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Gene: LIN28B (lin-28 homolog B) Sus scrofa

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Symbol:

LIN28B

Name:

lin-28 homolog B

RGD ID:

13921140

Description:

ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN miRNA catabolic process (inferred); negative regulation of gene expression (inferred); negative regulation of pre-miRNA processing (inferred); ASSOCIATED WITH disease of cellular proliferation (ortholog); Neoplastic Cell Transformation (ortholog); neuroblastoma (ortholog); FOUND IN cytosol (inferred); nucleolus (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

lin-28-like protein; protein lin-28 homolog B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIN28B (lin-28 homolog B)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Lin28b (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lin28b (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lin28b (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIN28B (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIN28B (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lin28b (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIN28B (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lin28b (lin-28 homolog B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	71,159,251 - 71,296,217 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	71,173,291 - 71,296,131 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	80,544,640 - 80,620,604 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

disease of cellular proliferation (ISO)

Neoplastic Cell Transformation (ISO)

neuroblastoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

miRNA catabolic process (IEA)

negative regulation of gene expression (IEA)

negative regulation of pre-miRNA processing (IEA)

negative regulation of primary miRNA processing (IEA)

positive regulation of miRNA catabolic process (IEA)

pre-miRNA processing (IEA)

regulatory ncRNA-mediated gene silencing (IEA)

RNA 3'-end processing (IEA)

RNA destabilization (IEA)

Cellular Component

cytosol (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LIN28B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	71,159,251 - 71,296,217 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	71,173,291 - 71,296,131 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	80,544,640 - 80,620,604 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIN28B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	104,937,026 - 105,083,332 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	104,936,616 - 105,083,332 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	105,388,840 - 105,531,207 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	105,511,616 - 105,637,899 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	106,027,398 - 106,153,711 (+)	NCBI		Celera
Cytogenetic Map	6	q16.3-q21	NCBI
HuRef	6	102,848,044 - 102,974,520 (+)	NCBI		HuRef
CHM1_1	6	105,666,790 - 105,793,230 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	106,113,007 - 106,259,422 (+)	NCBI		T2T-CHM13v2.0

Lin28b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	45,252,713 - 45,362,410 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	45,252,716 - 45,362,491 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	45,376,617 - 45,486,314 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	45,376,620 - 45,486,395 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	45,096,425 - 45,190,007 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	45,065,048 - 45,158,616 (-)	NCBI		MGSCv36	mm8
Celera	10	46,249,152 - 46,342,378 (-)	NCBI		Celera
Cytogenetic Map	10	B2	NCBI
cM Map	10	23.5	NCBI

Lin28b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	50,447,700 - 50,547,135 (-)	NCBI		GRCr8
mRatBN7.2	20	48,865,329 - 48,964,769 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	48,869,485 - 48,955,077 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	50,482,536 - 50,580,273 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	50,486,809 - 50,564,987 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	52,094,397 - 52,182,964 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	49,685,524 - 49,765,967 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	51,065,112 - 51,157,124 (+)	NCBI		Celera
Cytogenetic Map	20	q13	NCBI

Lin28b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955411	30,381,208 - 30,499,678 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIN28B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	124,960,620 - 125,103,365 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	122,847,067 - 122,989,850 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	102,755,256 - 102,897,739 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	106,646,991 - 106,772,374 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	106,640,448 - 106,772,374 (+)	Ensembl	panpan1.1		panPan2

LIN28B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	62,403,831 - 62,529,435 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	62,403,333 - 62,524,838 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	62,192,981 - 62,315,060 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	63,254,885 - 63,380,812 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	63,245,774 - 63,376,607 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	62,610,319 - 62,736,100 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	62,451,489 - 62,577,218 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	62,730,358 - 62,855,996 (+)	NCBI		UU_Cfam_GSD_1.0

Lin28b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	97,371,614 - 97,497,852 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	1,663,068 - 1,768,283 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	1,646,469 - 1,768,879 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIN28B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	68,721,209 - 68,859,257 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	68,725,392 - 68,839,811 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	41,068,949 - 41,187,159 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lin28b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624952	193,395 - 309,102 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LIN28B
2658 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system
10	1	1	1	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001315786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU407220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01129099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JF913470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000043008 ⟹ ENSSSCP00000054285

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	71,159,251 - 71,296,217 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000088401 ⟹ ENSSSCP00000061562

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	71,173,472 - 71,296,217 (+)	Ensembl

RefSeq Acc Id:

NM_001315786 ⟹ NP_001302715

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	71,174,509 - 71,295,216 (+)	NCBI

Sequence:

show sequence

ATGAACAGTTTGGGACTACTAACTGACTTTTTTGTCCTGTTCTACCCAGGCGGGGCAAGCAAAG
GTGGTGGAGAAGAGCCCGGGAAGCTGCCGGAGCAGGCAGAGGAGGAATCCCAGGTTTTGCACGG
AACTGGCCACTGTAAATGGTTCAACGTGCGAATGGGATTTGGATTCATCTCCATGATAAGCCGA
GAGGGAAGCCCCTTGGATATTCCAGTCGATGTATTTGTACACCAAAGCAAATTATTCATGGAAG
GATTTAGAAGCCTAAAAGAAGGAGAACCAGTGGAATTCACATTTAAAAAATCTTCCAAAGGCCT
TGAATCAATACGGGTAACAGGACCTGGTGGGAGCCCCTGTTTAGGAAGTGAAAGAAGACCCAAA
GGGAAGACACTACAAAAAAGAAAACCAAAGGGAGACAGATGCTACAACTGTGGCGGCCTTGATC
ATCATGCTAAGGAATGCAGTCTACCTCCTCAGCCAAAGAAGTGCCATTGCTGTCAGAGCATCAC
GCACATGGTGGCGAACTGCCCTCATAAAACTGTGGTGCAGGCGCCCACCAGTTCTCAGGGAAGA
CAGGAAGCAGAGCCCCAGCCATGCACGTCGACTTTCCCTCGAGAGGTGGGGGGAGGGCATGGCT
GTACATCACCACCGTTTCCTCAGGAGGCGAGGTCCGAGATCTCAGAGTGGCCAGGCAGGTCGCC
TCAAGAAGCTTCCTCCGTGAAGTCCTCTGCAGCGCCAGAAGAACAAAGCAAAAAGGGGCCTTCC
GTTCAAAAAAGGAAAAAGACATAA

hide sequence

RefSeq Acc Id:

XM_021079438 ⟹ XP_020935097

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	71,173,291 - 71,296,131 (+)	NCBI

Sequence:

show sequence

GATTCACAAGGACCCTCCATTGTGTTTAAGCAAAAGCACGAAATCGGCATTCTGATTTATCGTA
AAGAAGCGTCCCAAATTGTCTTTAAGATAACATGTTTGAGTTTTTCTTGTTCATTCATAAATTA
TTTTGATGTCAGCGTAGATGAAATGGCGATTGGTTATCTCTTCCTCTTGCCAGCCCCTTAAGGA
TCCGAGGTGAAATTAGTAGCAAGAAAGCATGTAATTGACAAAGTCACGTGTGCTCAGGGGGCCA
GAAACTGGAGAGAGAAGAGAAAAAAATCAAAAGAGGGAAAGCACATTAGACCATGCGAGCAAAA
TTTGTGATCGCACAAAATCAAGATGTTAGATTGATGCAGAAGATCACTCCGTTCCAAAGGGAAA
GTTTTCATCTCACGAGTTTGGAGCAGAGGGCCCGTGGGGCAACATGGCCGAAGGCGGGGCAAGC
AAAGGTGGTGGAGAAGAGCCCGGGAAGCTGCCGGAGCAGGCAGAGGAGGAATCCCAGGTTTTGC
ACGGAACTGGCCACTGTAAATGGTTCAACGTGCGAATGGGATTTGGATTCATCTCCATGATAAG
CCGAGAGGGAAGCCCCTTGGATATTCCAGTCGATGTATTTGTACACCAAAGCAAATTATTCATG
GAAGGATTTAGAAGCCTAAAAGAAGGAGAACCAGTGGAATTCACATTTAAAAAATCTTCCAAAG
GCCTTGAATCAATACGGGTAACAGGACCTGGTGGGAGCCCCTGTTTAGGAAGTGAAAGAAGACC
CAAAGGGAAGACACTACAAAAAAGAAAACCAAAGGGAGACAGATGCTACAACTGTGGCGGCCTT
GATCATCATGCTAAGGAATGCAGTCTACCTCCTCAGCCAAAGAAGTGCCATTGCTGTCAGAGCA
TCACGCACATGGTGGCGAACTGCCCTCATAAAACTGTGGTGCAGGCGCCCACCAGTTCTCAGGG
AAGACAGGAAGCAGAGCCCCAGCCATGCACGTCGACTTTCCCTCGAGAGGTGGGGGGAGGGCAT
GGCTGTACATCACCACCGTTTCCTCAGGAGGCGAGGTCCGAGATCTCAGAGTGGCCAGGCAGGT
CGCCTCAAGAAGCTTCCTCCGTGAAGTCCTCTGCAGCGCCAGAAGAACAAAGCAAAAAGGGGCC
TTCCGTTCAAAAAAGGAAAAAGACATAACCCTTCTTCTTAGCGTGTCGTTTTCTCTCCCTGGTT
GGGACGTCTACCTCATGCGAGTACAGGGGAACAGTATTTCACAAGAAGCAGCTGACCTGGGATT
TTAACTACTGTTGAGGAACTGTGAATTTTTTTAAACAGACAAATCACTCTAAGCAAATTAACCT
TTGAGCAGGGTGTCGTGTTGTATGTGACTCAGAGGACAAGATGCTGTGTATCGGATCGTGCATG
TGTGAGAGGGAGAGAGCCTGCGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCGGAGGAGTTTAT
AGAGAATGTAGACATGTATATAAAGAGGGCCTGTCTTTATATATGTGTGTCTAGAGCTAAAAGC
ACACACCCTCCCTCCCAGAATTGGACATTCCCAAGAATTGAAGACCCATGTGAAGCATTTTAGA
TGGTTAGGAAAATAACCCCTGGAGTTTTTCTTGAAATACCAGTCCCTGTAGGTTACATTAAGGA
AAAAACAACAACAAAAAAAATGTGACTGTTACCTTTTGTGTGAACCAAAGGATTCTCCAGATCG
CACAGCTGCCAATCATATGGTACTAAAGGTTTTTAAGACATCCGTTCTCCCAAGTTCAGGATTG
CCTCTTTTTCTTGCTATCTATAGAGTGTGTCCCTCGCTCCCATCCCCTTTGAAGGCAGTCCCTT
AACTCCATATGCCTCTGACTGCCATAAGCTCTTTTGAATCTGGGATACATAACTCCAGAAAAGA
CAATGAATGTGTACTTTCTGTGCCGATATTTCAAAAGTTTTTTAATTCCTATGTTTTAATTGTA
AATTAGATGCCTATTAAGAGAAGTGAAGGGGCGGGCCGTGTCTACATGTAGTGACTTGATTGTT
GTCAGTGGTATTTTGATACCAGCTCCTTATAATCTCTTACCTGTTGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001302715	(Get FASTA)	NCBI Sequence Viewer
	XP_020935097	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AEI54343	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000054285.2
	ENSSSCP00000061562
	ENSSSCP00000061562.1
	ENSSSCP00015028096.1
	ENSSSCP00015028132.1
	ENSSSCP00025015169.1
	ENSSSCP00025015194.1
	ENSSSCP00030046958.1
	ENSSSCP00030046967.1
	ENSSSCP00035001545.1
	ENSSSCP00035001548.1
	ENSSSCP00040016950.1
	ENSSSCP00040016966.1
	ENSSSCP00045047069.1
	ENSSSCP00060046895.1
	ENSSSCP00060046916.1
	ENSSSCP00070040083.1
	ENSSSCP00070040087.1
	ENSSSCP00070040089.1

RefSeq Acc Id:	XP_020935097 ⟸ XM_021079438
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VH17 (UniProtKB/TrEMBL), A0A5G2QAW5 (UniProtKB/TrEMBL), A0A8D1JG04 (UniProtKB/TrEMBL), A0A8D0P4C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGGASKGGGEEPGKLPEQAEEESQVLHGTGHCKWFNVRMGFGFISMISREGSPLDIPVDVFV HQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPKGDR CYNCGGLDHHAKECSLPPQPKKCHCCQSITHMVANCPHKTVVQAPTSSQGRQEAEPQPCTSTFP REVGGGHGCTSPPFPQEARSEISEWPGRSPQEASSVKSSAAPEEQSKKGPSVQKRKKT hide sequence

RefSeq Acc Id:	NP_001302715 ⟸ NM_001315786
- Peptide Label:	precursor
- UniProtKB:	F1RYQ5 (UniProtKB/TrEMBL), F8UV44 (UniProtKB/TrEMBL), A0A8D1JG04 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSLGLLTDFFVLFYPGGASKGGGEEPGKLPEQAEEESQVLHGTGHCKWFNVRMGFGFISMISR EGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPK GKTLQKRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHCCQSITHMVANCPHKTVVQAPTSSQGR QEAEPQPCTSTFPREVGGGHGCTSPPFPQEARSEISEWPGRSPQEASSVKSSAAPEEQSKKGPS VQKRKKT hide sequence

Ensembl Acc Id:

ENSSSCP00000061562 ⟸ ENSSSCT00000088401

Ensembl Acc Id:

ENSSSCP00000054285 ⟸ ENSSSCT00000043008

Protein Domains

CCHC-type CSD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000037612	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015052645	UniProtKB/TrEMBL
	ENSSSCG00025026799	UniProtKB/TrEMBL
	ENSSSCG00030072689	UniProtKB/TrEMBL
	ENSSSCG00035003694	UniProtKB/TrEMBL
	ENSSSCG00040029970	UniProtKB/TrEMBL
	ENSSSCG00045038287	UniProtKB/TrEMBL
	ENSSSCG00060077228	UniProtKB/TrEMBL
	ENSSSCG00070023800	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000043008.3	UniProtKB/TrEMBL
	ENSSSCT00000088401	ENTREZGENE
	ENSSSCT00000088401.2	UniProtKB/TrEMBL
	ENSSSCT00015070259.1	UniProtKB/TrEMBL
	ENSSSCT00015070336.1	UniProtKB/TrEMBL
	ENSSSCT00025036294.1	UniProtKB/TrEMBL
	ENSSSCT00025036342.1	UniProtKB/TrEMBL
	ENSSSCT00030101809.1	UniProtKB/TrEMBL
	ENSSSCT00030101824.1	UniProtKB/TrEMBL
	ENSSSCT00035004587.1	UniProtKB/TrEMBL
	ENSSSCT00035004594.1	UniProtKB/TrEMBL
	ENSSSCT00040040414.1	UniProtKB/TrEMBL
	ENSSSCT00040040474.1	UniProtKB/TrEMBL
	ENSSSCT00045066370.1	UniProtKB/TrEMBL
	ENSSSCT00060106279.1	UniProtKB/TrEMBL
	ENSSSCT00060106319.1	UniProtKB/TrEMBL
	ENSSSCT00070047490.1	UniProtKB/TrEMBL
	ENSSSCT00070047494.1	UniProtKB/TrEMBL
	ENSSSCT00070047496.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
	Zinc finger, CCHC-type	UniProtKB/TrEMBL
InterPro	CSD	UniProtKB/TrEMBL
	CSP_DNA-bd	UniProtKB/TrEMBL
	Lin-28_RNA-binding	UniProtKB/TrEMBL
	Lin-28A-like_Znf-CCHC_2	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100738513	UniProtKB/TrEMBL
NCBI Gene	LIN28B	ENTREZGENE
PANTHER	PROTEIN LIN-28	UniProtKB/TrEMBL
	PROTEIN LIN-28 HOMOLOG B	UniProtKB/TrEMBL
Pfam	CSD	UniProtKB/TrEMBL
	Lin-28A-like_zf-CCHC_2	UniProtKB/TrEMBL
	zf-CCHC	UniProtKB/TrEMBL
PRINTS	COLDSHOCK	UniProtKB/TrEMBL
PROSITE	CSD_2	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
SMART	CSP	UniProtKB/TrEMBL
	ZnF_C2HC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
	SSF57756	UniProtKB/TrEMBL
UniProt	A0A4X1VED0_PIG	UniProtKB/TrEMBL
	A0A4X1VH17	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QAW5	ENTREZGENE
	A0A8D0JPJ7_PIG	UniProtKB/TrEMBL
	A0A8D0P4C4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JG04	ENTREZGENE, UniProtKB/TrEMBL
	F1RYQ5	ENTREZGENE, UniProtKB/TrEMBL
	F8UV44	ENTREZGENE
UniProt Secondary	A0A287BCN2	UniProtKB/TrEMBL
	A0A5G2QAW5	UniProtKB/TrEMBL
	F8UV44	UniProtKB/TrEMBL
VGNC ID	VGNC:89729	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI