ARL2BP (ADP ribosylation factor like GTPase 2 binding protein) - Rat Genome Database

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Gene: ARL2BP (ADP ribosylation factor like GTPase 2 binding protein) Sus scrofa
Analyze
Symbol: ARL2BP
Name: ADP ribosylation factor like GTPase 2 binding protein
RGD ID: 13892266
Description: ENCODES a protein that exhibits transcription coactivator activity (inferred); INVOLVED IN positive regulation of tyrosine phosphorylation of STAT protein (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN centrosome (inferred); cilium (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 2-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,207,071 - 19,223,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,207,013 - 19,215,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,197,974 - 17,205,969 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15679890   PMID:30032202  


Genomics

Comparative Map Data
ARL2BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,207,071 - 19,223,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,207,013 - 19,215,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,197,974 - 17,205,969 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL2BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,245,259 - 57,253,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,245,259 - 57,253,635 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,279,171 - 57,287,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,836,539 - 55,845,046 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,836,538 - 55,845,046NCBI
Celera1641,778,726 - 41,787,233 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1643,148,688 - 43,157,185 (+)NCBIHuRef
CHM1_11658,687,284 - 58,695,791 (+)NCBICHM1_1
T2T-CHM13v2.01663,041,248 - 63,049,621 (+)NCBIT2T-CHM13v2.0
Arl2bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,393,228 - 95,401,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,393,228 - 95,401,053 (+)EnsemblGRCm39 Ensembl
GRCm38894,666,600 - 94,674,457 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,666,600 - 94,674,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,190,655 - 97,198,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,555,884 - 97,563,551 (+)NCBIMGSCv36mm8
Celera898,995,245 - 99,002,895 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.65NCBI
Arl2bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,342,895 - 10,352,529 (-)NCBIGRCr8
mRatBN7.21910,336,921 - 10,346,555 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,336,921 - 10,346,564 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,300,195 - 10,309,713 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,067,044 - 11,076,562 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,353,992 - 10,363,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,753,670 - 10,763,247 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,753,681 - 10,763,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,747,782 - 10,757,507 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,777,163 - 10,786,698 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1910,226,305 - 10,235,761 (-)NCBICelera
Cytogenetic Map19p13NCBI
Arl2bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543314,887,094 - 14,894,119 (+)NCBIChiLan1.0ChiLan1.0
ARL2BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,714,280 - 66,722,836 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,635,053 - 72,643,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,520,140 - 37,528,634 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,653,883 - 56,661,404 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,653,742 - 56,661,404 (+)Ensemblpanpan1.1panPan2
ARL2BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,127,139 - 59,133,993 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,128,323 - 59,133,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,754,660 - 55,762,075 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,664,788 - 59,672,205 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,665,634 - 59,672,310 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,496,410 - 56,503,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,503,458 - 57,510,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,397,522 - 58,404,950 (-)NCBIUU_Cfam_GSD_1.0
Arl2bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,236,986 - 50,245,702 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,343,336 - 9,352,065 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,343,333 - 9,352,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL2BP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,192,283 - 43,200,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,192,287 - 43,201,681 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,118,182 - 33,127,306 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl2bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,798,870 - 28,805,988 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARL2BP
252 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000003119   ⟹   ENSSSCP00000003038
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl619,207,063 - 19,215,011 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000075112   ⟹   ENSSSCP00000069536
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl619,207,071 - 19,223,194 (+)Ensembl
RefSeq Acc Id: XM_003126968   ⟹   XP_003127016
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1619,207,013 - 19,215,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013988521   ⟹   XP_013843975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1619,207,016 - 19,215,014 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003127016   ⟸   XM_003126968
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SDE4 (UniProtKB/TrEMBL),   A0A5G2QXD5 (UniProtKB/TrEMBL),   A0A8D1D0N8 (UniProtKB/TrEMBL),   A0A8D0JZ04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843975   ⟸   XM_013988521
- Peptide Label: isoform X2
- UniProtKB: A0A8D1D0N8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000069536   ⟸   ENSSSCT00000075112
Ensembl Acc Id: ENSSSCP00000003038   ⟸   ENSSSCT00000003119
Protein Domains
BART


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002819 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015050016 UniProtKB/TrEMBL
  ENSSSCG00025070507 UniProtKB/TrEMBL
  ENSSSCG00030059755 UniProtKB/TrEMBL
  ENSSSCG00035063012 UniProtKB/TrEMBL
  ENSSSCG00040010699 UniProtKB/TrEMBL
  ENSSSCG00045027967 UniProtKB/TrEMBL
  ENSSSCG00050037121 UniProtKB/TrEMBL
  ENSSSCG00055019074 UniProtKB/TrEMBL
  ENSSSCG00060076559 UniProtKB/TrEMBL
  ENSSSCG00065072937 UniProtKB/TrEMBL
  ENSSSCG00070000105 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000075112 ENTREZGENE
  ENSSSCT00000075112.2 UniProtKB/TrEMBL
  ENSSSCT00015066577.1 UniProtKB/TrEMBL
  ENSSSCT00025096791.1 UniProtKB/TrEMBL
  ENSSSCT00025096921.1 UniProtKB/TrEMBL
  ENSSSCT00030083408.1 UniProtKB/TrEMBL
  ENSSSCT00030083449.1 UniProtKB/TrEMBL
  ENSSSCT00030083476.1 UniProtKB/TrEMBL
  ENSSSCT00035084705.1 UniProtKB/TrEMBL
  ENSSSCT00035084708.1 UniProtKB/TrEMBL
  ENSSSCT00035084713.1 UniProtKB/TrEMBL
  ENSSSCT00040013917.1 UniProtKB/TrEMBL
  ENSSSCT00040013942.1 UniProtKB/TrEMBL
  ENSSSCT00040013965.1 UniProtKB/TrEMBL
  ENSSSCT00045047578.1 UniProtKB/TrEMBL
  ENSSSCT00045047642.1 UniProtKB/TrEMBL
  ENSSSCT00045047700.1 UniProtKB/TrEMBL
  ENSSSCT00050049952.1 UniProtKB/TrEMBL
  ENSSSCT00050049957.1 UniProtKB/TrEMBL
  ENSSSCT00055037285.1 UniProtKB/TrEMBL
  ENSSSCT00055037363.1 UniProtKB/TrEMBL
  ENSSSCT00055037437.1 UniProtKB/TrEMBL
  ENSSSCT00060105035.1 UniProtKB/TrEMBL
  ENSSSCT00060105068.1 UniProtKB/TrEMBL
  ENSSSCT00060105094.1 UniProtKB/TrEMBL
  ENSSSCT00065100314.1 UniProtKB/TrEMBL
  ENSSSCT00065100326.1 UniProtKB/TrEMBL
  ENSSSCT00070000149.1 UniProtKB/TrEMBL
  ENSSSCT00070000153.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1520.10 UniProtKB/TrEMBL
InterPro ARL2BP UniProtKB/TrEMBL
  BART_dom UniProtKB/TrEMBL
  BART_sf UniProtKB/TrEMBL
KEGG Report ssc:100515548 UniProtKB/TrEMBL
NCBI Gene ARL2BP ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN UniProtKB/TrEMBL
  PTHR15487 UniProtKB/TrEMBL
Pfam ARL2_Bind_BART UniProtKB/TrEMBL
UniProt A0A4X1SDE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QXD5 ENTREZGENE
  A0A8D0JZ04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XR17_PIG UniProtKB/TrEMBL
  A0A8D1D0N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D116_PIG UniProtKB/TrEMBL
  A0A8D1DDK1_PIG UniProtKB/TrEMBL
  A0A8D1R6J0_PIG UniProtKB/TrEMBL
  A0A8D1R827_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2QXD5 UniProtKB/TrEMBL
VGNC ID VGNC:85521 ENTREZGENE