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Gene: BARX1 (BARX homeobox 1) Sus scrofa

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Symbol:

BARX1

Name:

BARX homeobox 1

RGD ID:

13883964

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN animal organ development (inferred); anterior/posterior pattern specification (inferred); cell-cell signaling (inferred); ASSOCIATED WITH esophagus adenocarcinoma (ortholog); hiatus hernia (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein BarH-like 1

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BARX1 (BARX homeobox 1)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Barx1 (BarH-like homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Barx1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Barx1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BARX1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BARX1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Barx1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BARX1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Barx1 (BARX homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	43,284,464 - 43,288,281 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	44,604,095 - 44,607,784 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
BARX1	Pig	hiatus hernia		ISO	BARX1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hiatus hernia	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
BARX1	Pig	esophagus adenocarcinoma		ISO	BARX1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:24121790

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
BARX1	Pig	animal organ development	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	anterior/posterior pattern specification	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	cell-cell signaling	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	digestive system development	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	endothelial cell differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	negative regulation of Wnt signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
BARX1	Pig	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0004854 more ...	150520179		GO_Central	GO_REF:0000033
BARX1	Pig	regulation of transcription by RNA polymerase II	involved_in	IEA	GO:0000981	150520179		GOC	GO_REF:0000108
BARX1	Pig	spleen development	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	tissue development	acts_upstream_of_or_within	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107
BARX1	Pig	Wnt signaling pathway	acts_upstream_of	IEA	UniProtKB:Q9ER42 and ensembl:ENSMUSP00000021813	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
BARX1	Pig	nucleus	is_active_in	IBA	FB:FBgn0011758 more ...	150520179		GO_Central	GO_REF:0000033
BARX1	Pig	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
BARX1	Pig	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
BARX1	Pig	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
BARX1	Pig	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
BARX1	Pig	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
BARX1	Pig	DNA binding	enables	IEA	InterPro:IPR000047 more ...	150520179		InterPro	GO_REF:0000002
BARX1	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	FB:FBgn0004854 more ...	150520179		GO_Central	GO_REF:0000033
BARX1	Pig	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
BARX1	Pig	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IBA	PANTHER:PTN001551673 and UniProtKB:Q9UMQ3	150520179		GO_Central	GO_REF:0000033

PMID:22301074	PMID:30032202

BARX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	43,284,464 - 43,288,281 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	44,604,095 - 44,607,784 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BARX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	93,951,627 - 93,955,355 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	93,951,627 - 93,955,355 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	96,713,909 - 96,717,637 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	95,753,730 - 95,757,429 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	93,793,463 - 93,797,157	NCBI
Celera	9	67,155,476 - 67,159,081 (-)	NCBI		Celera
Cytogenetic Map	9	q22.32	NCBI
HuRef	9	66,390,835 - 66,397,692 (-)	NCBI		HuRef
CHM1_1	9	96,860,800 - 96,864,365 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	106,119,614 - 106,123,341 (-)	NCBI		T2T-CHM13v2.0

Barx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	48,816,512 - 48,819,983 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	48,816,474 - 48,819,983 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	48,663,036 - 48,666,507 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	48,662,998 - 48,666,507 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	48,758,405 - 48,761,876 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	48,675,232 - 48,678,457 (+)	NCBI		MGSCv36	mm8
Celera	13	49,753,525 - 49,756,996 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	24.9	NCBI

Barx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	16,196,764 - 16,200,239 (-)	NCBI		GRCr8
mRatBN7.2	17	15,990,412 - 15,993,887 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,990,412 - 15,993,887 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	15,869,942 - 15,873,394 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	17,474,921 - 17,478,373 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	15,796,731 - 15,800,183 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	14,824,721 - 14,828,196 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	14,824,734 - 14,828,329 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	16,875,794 - 16,879,269 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,993,765 - 21,997,240 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	21,993,839 - 21,997,209 (-)	NCBI
Celera	17	15,717,041 - 15,720,516 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Barx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955515	4,229,783 - 4,234,191 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955515	4,230,713 - 4,234,189 (+)	NCBI	ChiLan1.0	ChiLan1.0

BARX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	45,400,331 - 45,479,310 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	45,402,711 - 45,481,693 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	65,071,990 - 65,151,152 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	93,133,691 - 93,212,391 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

BARX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	98,036,444 - 98,039,818 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	98,036,227 - 98,039,845 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	98,432,652 - 98,436,038 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	98,654,250 - 98,657,636 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	98,654,081 - 98,657,631 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	98,269,046 - 98,272,432 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	98,005,186 - 98,008,562 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	98,759,696 - 98,763,082 (+)	NCBI		UU_Cfam_GSD_1.0

Barx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	8,938,453 - 8,946,971 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937000	88,529 - 92,147 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937000	88,529 - 96,794 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BARX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	104,299,516 - 104,307,613 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	104,303,265 - 104,306,251 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	92,615,149 - 92,618,888 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Barx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	2,679,590 - 2,683,079 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	2,679,590 - 2,683,155 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in BARX1
26 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	hemolymphoid system	mesoderm	respiratory system
2	1	2	1


RefSeq Transcripts	XM_013995792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013995793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP102259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000008854 ⟹ ENSSSCP00000008630

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	43,284,464 - 43,288,281 (-)	Ensembl

RefSeq Acc Id:

XM_013995792 ⟹ XP_013851246

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI

Sequence:

show sequence

CAGAGCCCCGCGCGCCCCGCCCGCGCCCTGTGCCTCCGCCCGGCCGGCCGGCGGGGGAGGGGGCATGAGCCGGCGCCCACGAGCCGCCCGGAGCTGCGGGCCGGCCTAGACCCCCGCGTGGGCCCCGC
GCCCCAGCCGCTGCTGCCGCCGAGCCCCGGGCACCGCGATGCAGCGGCCAGGGGAGCCGGGCGCAGCGCGCTTCGGGCCGCCCGAGGGCTGCGCTGACCACCGGCCGCACCGCTACCGCAGCTTCATG
ATCGAGGAAATCCTCACTGAGCCTCCGGGGCCCAAGGGCGCCGCGCCTGCCGCCGCCGCCGCCGCCGCGGGCGAGCTGCTCAAGTTCGGCGTGCAGGCGCTGCTGGCGGCGCGGCCCTTCCACAGCCA
CCTGGCGGTGCTGAAGGCTGAGCAGGCGGCAGTTTTTAAGTTCCCGCTGGCGCCGCTCGGCTGCTCCGGGCTGGGCTCGGCGCTGCTTGCCGCGGGGCCTGGGCTGCCCGGCGCTGCCGGCGCGCCGC
ACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCGTCAGGCGCGGGGGAGCCAGGCACCAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTCACCGAGCTGCAGCTGATGGGCCTAGAG
AAACGCTTTGAGAAGCAGAAGTACCTCTCCACGCCGGACAGATCTCGCCGAGTCCCTGGGTCTGAGCCAGTTGCAGGTGAAGACATGGTACCAGAATCGAAGGATGAAGTGGAAGAAAATAGTGCTGC
AGGGCGGCGGCCTGGAGTCTCCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATACCCACGAGCGAGCAGCTCACGGAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGTTGGGA
GAGGCCGGCGACCGGAGCCACGAGGACTGAGAGCCGCTGAGGGTGCGGACACGGGGACTCCCGCCCCCTGCAGTCCGCGGCCCCCACAACTCGCAGGATGCCGCGAGTCGGCCCTTCCGCGTTCACGC
CATTTGCTTTCTAAACTTTTTATTATTACTTTGAATGCGGACAGTTAGGGGCCAAACCAGGAAGGACAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACTCACGT
CCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCACGCGCATTCACGCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGCCGGGACGCCTCC
AGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGCCGCAAATGGCCCAACATGGCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTCTTACGAAGACGGTGATTTTT
TTTTTCCAATAAAATATTTTATGACA

hide sequence

RefSeq Acc Id:

XM_013995793 ⟹ XP_013851247

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI

Sequence:

show sequence

CAGAGCCCCGCGCGCCCCGCCCGCGCCCTGTGCCTCCGCCCGGCCGGCCGGCGGGGGAGGGGGC
ATGAGCCGGCGCCCACGAGCCGCCCGGAGCTGCGGGCCGGCCTAGACCCCCGCGTGGGCCCCGCGCCCCAGCCGCTGCTGCCGCCGAGCCCCGGGCACCGCGATGCAGCGGCCAGGGGAGCCGGGCGC
AGCGCGCTTCGGGCCGCCCGAGGGCTGCGCTGACCACCGGCCGCACCGCTACCGCAGCTTCATGATCGAGGAAATCCTCACTGAGCCTCCGGGGCCCAAGGGCGCCGCGCCTGCCGCCGCCGCCGCCG
CCGCGGGCGAGCTGCTCAAGTTCGGCGTGCAGGCGCTGCTGGCGGCGCGGCCCTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCGGCAGTTTTTAAGTTCCCGCTGGCGCCGCTCGGCTGC
TCCGGGCTGGGCTCGGCGCTGCTTGCCGCGGGGCCTGGGCTGCCCGGCGCTGCCGGCGCGCCGCACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCGTCAGGCGCGGGGGAGCCAGGCAC
CAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTCACCGAGCTGCAGCTGATGGGCCTAGAGAAACGCTTTGAGAAGCAGAAGTACCTCTCCACGCCGGACAGATCTCGCCGAGTCCCTGGGTCTG
AGCCAGTTGCAGGTGAAGACATGGTACCAGAATCGAAGGATGAAGTGGAAGAAAATAGTGCTGCAGGGCGGCGGCCTGGAGTCTCCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATACCCAC
GAGCGAGCAGCTCACGGAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGTTGGGAGAGGCCGGCGACCGGAGCCACGAGGACTGAGAGCCGCTGAGGTTAGGGGCCAAACCAGGAAGGA
CAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACTCACGTCCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCACGCGCATTCAC
GCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGCCGGGACGCCTCCAGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGCCGCAAATGGCCCAACATG
GCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTCTTACGAAGACGGTGATTTTTTTTTTCCAATAAAATATTTTATGACA

hide sequence

RefSeq Acc Id:

XM_021086996 ⟹ XP_020942655

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI

Sequence:

show sequence

CAGAGCCCCGCGCGCCCCGCCCGCGCCCTGTGCCTCCGCCCGGCCGGCCGGCGGGGGAGGGGGCATGAGCCGGCGCCCACGAGCCGCCCGGAGCTGCGGGCCGGCCTAGACCCCCGCGTGGGCCCCGC
GCCCCAGCCGCTGCTGCCGCCGAGCCCCGGGCACCGCGATGCAGCGGCCAGGGGAGCCGGGCGCAGCGCGCTTCGGGCCGCCCGAGGGCTGCGCTGACCACCGGCCGCACCGCTACCGCAGCTTCATG
ATCGAGGAAATCCTCACTGAGCCTCCGGGGCCCAAGGGCGCCGCGCCTGCCGCCGCCGCCGCCGCCGCGGGCGAGCTGCTCAAGTTCGGCGTGCAGGCGCTGCTGGCGGCGCGGCCCTTCCACAGCCA
CCTGGCGGTGCTGAAGGCTGAGCAGGCGGCAGTTTTTAAGTTCCCGCTGGCGCCGCTCGGCTGCTCCGGGCTGGGCTCGGCGCTGCTTGCCGCGGGGCCTGGGCTGCCCGGCGCTGCCGGCGCGCCGC
ACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCGTCAGGCGCGGGGGAGCCAGGCACCAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTCACCGAGCTGCAGCTGATGGGCCTAGAG
AAACGCTTTGAGAAGCAGAAGTACCTCTCCACGCCGGACAGAATAGATCTCGCCGAGTCCCTGGGTCTGAGCCAGTTGCAGGTGAAGACATGGTACCAGAATCGAAGGATGAAGTGGAAGAAAATAGT
GCTGCAGGGCGGCGGCCTGGAGTCTCCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATACCCACGAGCGAGCAGCTCACGGAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGT
TGGGAGAGGCCGGCGACCGGAGCCACGAGGACTGAGAGCCGCTGAGGGTGCGGACACGGGGACTCCCGCCCCCTGCAGTCCGCGGCCCCCACAACTCGCAGGATGCCGCGAGTCGGCCCTTCCGCGTT
CACGCCATTTGCTTTCTAAACTTTTTATTATTACTTTGAATGCGGACAGTTAGGGGCCAAACCAGGAAGGACAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACT
CACGTCCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCACGCGCATTCACGCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGCCGGGACG
CCTCCAGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGCCGCAAATGGCCCAACATGGCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTCTTACGAAGACGGTGA
TTTTTTTTTTCCAATAAAATATTTTATGACA

hide sequence

RefSeq Acc Id:

XM_021086997 ⟹ XP_020942656

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	43,284,609 - 43,288,269 (-)	NCBI

Sequence:

show sequence

CAGAGCCCCGCGCGCCCCGCCCGCGCCCTGTGCCTCCGCCCGGCCGGCCGGCGGGGGAGGGGGC
ATGAGCCGGCGCCCACGAGCCGCCCGGAGCTGCGGGCCGGCCTAGACCCCCGCGTGGGCCCCGCGCCCCAGCCGCTGCTGCCGCCGAGCCCCGGGCACCGCGATGCAGCGGCCAGGGGAGCCGGGCGC
AGCGCGCTTCGGGCCGCCCGAGGGCTGCGCTGACCACCGGCCGCACCGCTACCGCAGCTTCATGATCGAGGAAATCCTCACTGAGCCTCCGGGGCCCAAGGGCGCCGCGCCTGCCGCCGCCGCCGCCG
CCGCGGGCGAGCTGCTCAAGTTCGGCGTGCAGGCGCTGCTGGCGGCGCGGCCCTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCGGCAGTTTTTAAGTTCCCGCTGGCGCCGCTCGGCTGC
TCCGGGCTGGGCTCGGCGCTGCTTGCCGCGGGGCCTGGGCTGCCCGGCGCTGCCGGCGCGCCGCACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCGTCAGGCGCGGGGGAGCCAGGCAC
CAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTCACCGAGCTGCAGCTGATGGGCCTAGAGAAACGCTTTGAGAAGCAGAAGTACCTCTCCACGCCGGACAGAATAGATCTCGCCGAGTCCCTGG
GTCTGAGCCAGTTGCAGGTGAAGACATGGTACCAGAATCGAAGGATGAAGTGGAAGAAAATAGTGCTGCAGGGCGGCGGCCTGGAGTCTCCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATA
CCCACGAGCGAGCAGCTCACGGAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGTTGGGAGAGGCCGGCGACCGGAGCCACGAGGACTGAGAGCCGCTGAGGTTAGGGGCCAAACCAGG
AAGGACAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACTCACGTCCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCACGCGCA
TTCACGCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGCCGGGACGCCTCCAGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGCCGCAAATGGCCCA
ACATGGCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTCTTACGAAGACGGTGATTTTTTTTTTCCAATAAAATATTTTATGACA

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Protein RefSeqs	XP_013851246	(Get FASTA)	NCBI Sequence Viewer
	XP_013851247	(Get FASTA)	NCBI Sequence Viewer
	XP_020942655	(Get FASTA)	NCBI Sequence Viewer
	XP_020942656	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000008630
	ENSSSCP00000008630.3
	ENSSSCP00025004894.1
	ENSSSCP00030028662.1
	ENSSSCP00035023263.1
	ENSSSCP00040020720.1
	ENSSSCP00045007770.1
	ENSSSCP00050012106.1
	ENSSSCP00055041107.1
	ENSSSCP00060035438.1
	ENSSSCP00065007961.1
	ENSSSCP00070031388.1

RefSeq Acc Id:

XP_013851247 ⟸ XM_013995793

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLE
SSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRSRRVPGSEPVAGEDMVPESKDEVEENSAAGRRPGVSHQAQGEAQEELHTHERAAHGTGARQRSREAGRGVGRGRRPEPRGLRAA
EVRGQTRKDRP

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RefSeq Acc Id:

XP_013851246 ⟸ XM_013995792

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQAL
LAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLESSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRSRRVPGSEPVAGEDMVPESK
DEVEENSAAGRRPGVSHQAQGEAQEELHTHERAAHGTGARQRSREAGRGVGRGRRPEPRGLRAAEGADTGTPAPCSPRPPQLAGCRESALPRSRHLLSKLFIITLNADS

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RefSeq Acc Id:	XP_020942656 ⟸ XM_021086997
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1UMX0 (UniProtKB/TrEMBL), F1SUC6 (UniProtKB/TrEMBL), A0A8D1XLK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLE SSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAEALGEAGDRSHED hide sequence

RefSeq Acc Id:	XP_020942655 ⟸ XM_021086996
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1UMX0 (UniProtKB/TrEMBL), F1SUC6 (UniProtKB/TrEMBL), A0A8D1XLK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLE SSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAEALGEAGDRSHED hide sequence

Ensembl Acc Id:

ENSSSCP00000008630 ⟸ ENSSSCT00000008854

Protein Domains

Homeobox

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000008081	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025009328	UniProtKB/TrEMBL
	ENSSSCG00030044927	UniProtKB/TrEMBL
	ENSSSCG00035043570	UniProtKB/TrEMBL
	ENSSSCG00040037274	UniProtKB/TrEMBL
	ENSSSCG00045006848	UniProtKB/TrEMBL
	ENSSSCG00050021704	UniProtKB/TrEMBL
	ENSSSCG00055026011	UniProtKB/TrEMBL
	ENSSSCG00060059969	UniProtKB/TrEMBL
	ENSSSCG00065014571	UniProtKB/TrEMBL
	ENSSSCG00070018998	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000008854	ENTREZGENE
	ENSSSCT00000008854.5	UniProtKB/TrEMBL
	ENSSSCT00025012347.1	UniProtKB/TrEMBL
	ENSSSCT00030062681.1	UniProtKB/TrEMBL
	ENSSSCT00035057885.1	UniProtKB/TrEMBL
	ENSSSCT00040049905.1	UniProtKB/TrEMBL
	ENSSSCT00045011407.1	UniProtKB/TrEMBL
	ENSSSCT00050029240.1	UniProtKB/TrEMBL
	ENSSSCT00055051429.1	UniProtKB/TrEMBL
	ENSSSCT00060081820.1	UniProtKB/TrEMBL
	ENSSSCT00065019416.1	UniProtKB/TrEMBL
	ENSSSCT00070037538.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
	Homeobox_TF	UniProtKB/TrEMBL
	HTH_motif	UniProtKB/TrEMBL
NCBI Gene	BARX1	ENTREZGENE
PANTHER	BARX HOMEOBOX 1	UniProtKB/TrEMBL
	HOMEO BOX HB9 LIKE A-RELATED	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
	HTHREPRESSR	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1UMX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1XLK5	ENTREZGENE, UniProtKB/TrEMBL
	F1SUC6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:85757	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD