BARX1 (BARX homeobox 1) - Rat Genome Database

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Gene: BARX1 (BARX homeobox 1) Sus scrofa
Analyze
Symbol: BARX1
Name: BARX homeobox 1
RGD ID: 13883964
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN animal organ development (ortholog); anterior/posterior pattern specification (ortholog); cell-cell signaling (ortholog); ASSOCIATED WITH esophagus adenocarcinoma (ortholog); hiatus hernia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein BarH-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,284,464 - 43,288,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,604,095 - 44,607,784 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BARX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,284,464 - 43,288,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,604,095 - 44,607,784 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BARX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38993,951,627 - 93,955,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl993,951,627 - 93,955,355 (-)EnsemblGRCh38hg38GRCh38
GRCh37996,713,909 - 96,717,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36995,753,730 - 95,757,429 (-)NCBINCBI36Build 36hg18NCBI36
Build 34993,793,463 - 93,797,157NCBI
Celera967,155,476 - 67,159,081 (-)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef966,390,835 - 66,397,692 (-)NCBIHuRef
CHM1_1996,860,800 - 96,864,365 (-)NCBICHM1_1
T2T-CHM13v2.09106,119,614 - 106,123,341 (-)NCBIT2T-CHM13v2.0
Barx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,816,512 - 48,819,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,816,474 - 48,819,983 (+)EnsemblGRCm39 Ensembl
GRCm381348,663,036 - 48,666,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,662,998 - 48,666,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv371348,758,405 - 48,761,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361348,675,232 - 48,678,457 (+)NCBIMGSCv36mm8
Celera1349,753,525 - 49,756,996 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.9NCBI
Barx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,196,764 - 16,200,239 (-)NCBIGRCr8
mRatBN7.21715,990,412 - 15,993,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,990,412 - 15,993,887 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,869,942 - 15,873,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,474,921 - 17,478,373 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,796,731 - 15,800,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01714,824,721 - 14,828,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,824,734 - 14,828,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01716,875,794 - 16,879,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,993,765 - 21,997,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,993,839 - 21,997,209 (-)NCBI
Celera1715,717,041 - 15,720,516 (-)NCBICelera
Cytogenetic Map17p14NCBI
Barx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555154,229,783 - 4,234,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555154,230,713 - 4,234,189 (+)NCBIChiLan1.0ChiLan1.0
BARX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21145,400,331 - 45,479,310 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1945,402,711 - 45,481,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0965,071,990 - 65,151,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1993,133,691 - 93,212,391 (-)NCBIpanpan1.1PanPan1.1panPan2
BARX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,036,444 - 98,039,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,036,227 - 98,039,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,432,652 - 98,436,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,654,250 - 98,657,636 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,654,081 - 98,657,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,269,046 - 98,272,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,005,186 - 98,008,562 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,759,696 - 98,763,082 (+)NCBIUU_Cfam_GSD_1.0
Barx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,938,453 - 8,946,971 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493700088,529 - 92,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493700088,529 - 96,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BARX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112104,299,516 - 104,307,613 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12104,303,265 - 104,306,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603892,615,149 - 92,618,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Barx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248682,679,590 - 2,683,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248682,679,590 - 2,683,155 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BARX1
24 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
hemolymphoid system
mesoderm
respiratory system
2 1 2 1

Sequence


Ensembl Acc Id: ENSSSCT00000008854   ⟹   ENSSSCP00000008630
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl343,284,464 - 43,288,281 (-)Ensembl
RefSeq Acc Id: XM_013995792   ⟹   XP_013851246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013995793   ⟹   XP_013851247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086996   ⟹   XP_020942655
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086997   ⟹   XP_020942656
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013851247   ⟸   XM_013995793
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013851246   ⟸   XM_013995792
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020942656   ⟸   XM_021086997
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UMX0 (UniProtKB/TrEMBL),   F1SUC6 (UniProtKB/TrEMBL),   A0A8D1XLK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942655   ⟸   XM_021086996
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UMX0 (UniProtKB/TrEMBL),   F1SUC6 (UniProtKB/TrEMBL),   A0A8D1XLK5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008630   ⟸   ENSSSCT00000008854
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008081 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025009328 UniProtKB/TrEMBL
  ENSSSCG00030044927 UniProtKB/TrEMBL
  ENSSSCG00035043570 UniProtKB/TrEMBL
  ENSSSCG00040037274 UniProtKB/TrEMBL
  ENSSSCG00045006848 UniProtKB/TrEMBL
  ENSSSCG00050021704 UniProtKB/TrEMBL
  ENSSSCG00055026011 UniProtKB/TrEMBL
  ENSSSCG00060059969 UniProtKB/TrEMBL
  ENSSSCG00065014571 UniProtKB/TrEMBL
  ENSSSCG00070018998 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008854 ENTREZGENE
  ENSSSCT00000008854.5 UniProtKB/TrEMBL
  ENSSSCT00025012347.1 UniProtKB/TrEMBL
  ENSSSCT00030062681.1 UniProtKB/TrEMBL
  ENSSSCT00035057885.1 UniProtKB/TrEMBL
  ENSSSCT00040049905.1 UniProtKB/TrEMBL
  ENSSSCT00045011407.1 UniProtKB/TrEMBL
  ENSSSCT00050029240.1 UniProtKB/TrEMBL
  ENSSSCT00055051429.1 UniProtKB/TrEMBL
  ENSSSCT00060081820.1 UniProtKB/TrEMBL
  ENSSSCT00065019416.1 UniProtKB/TrEMBL
  ENSSSCT00070037538.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeobox_TF UniProtKB/TrEMBL
  HTH_motif UniProtKB/TrEMBL
NCBI Gene BARX1 ENTREZGENE
PANTHER BARX HOMEOBOX 1 UniProtKB/TrEMBL
  HOMEO BOX HB9 LIKE A-RELATED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
  HTHREPRESSR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A4X1UMX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XLK5 ENTREZGENE, UniProtKB/TrEMBL
  F1SUC6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85757 ENTREZGENE