BARX1 (BARX homeobox 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: BARX1 (BARX homeobox 1) Chlorocebus sabaeus
Analyze
Symbol: BARX1
Name: BARX homeobox 1
RGD ID: 18499704
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN animal organ development (ortholog); anterior/posterior pattern specification (ortholog); cell-cell signaling (ortholog); ASSOCIATED WITH esophagus adenocarcinoma (ortholog); hiatus hernia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein BarH-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112104,299,516 - 104,307,613 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12104,303,265 - 104,306,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603892,615,149 - 92,618,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BARX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112104,299,516 - 104,307,613 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12104,303,265 - 104,306,251 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603892,615,149 - 92,618,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BARX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38993,951,627 - 93,955,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl993,951,627 - 93,955,355 (-)EnsemblGRCh38hg38GRCh38
GRCh37996,713,909 - 96,717,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36995,753,730 - 95,757,429 (-)NCBINCBI36Build 36hg18NCBI36
Build 34993,793,463 - 93,797,157NCBI
Celera967,155,476 - 67,159,081 (-)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef966,390,835 - 66,397,692 (-)NCBIHuRef
CHM1_1996,860,800 - 96,864,365 (-)NCBICHM1_1
T2T-CHM13v2.09106,119,614 - 106,123,341 (-)NCBIT2T-CHM13v2.0
Barx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,816,512 - 48,819,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,816,474 - 48,819,983 (+)EnsemblGRCm39 Ensembl
GRCm381348,663,036 - 48,666,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,662,998 - 48,666,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv371348,758,405 - 48,761,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361348,675,232 - 48,678,457 (+)NCBIMGSCv36mm8
Celera1349,753,525 - 49,756,996 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.9NCBI
Barx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,196,764 - 16,200,239 (-)NCBIGRCr8
mRatBN7.21715,990,412 - 15,993,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,990,412 - 15,993,887 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,869,942 - 15,873,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,474,921 - 17,478,373 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,796,731 - 15,800,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01714,824,721 - 14,828,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,824,734 - 14,828,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01716,875,794 - 16,879,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,993,765 - 21,997,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,993,839 - 21,997,209 (-)NCBI
Celera1715,717,041 - 15,720,516 (-)NCBICelera
Cytogenetic Map17p14NCBI
Barx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555154,229,783 - 4,234,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555154,230,713 - 4,234,189 (+)NCBIChiLan1.0ChiLan1.0
BARX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21145,400,331 - 45,479,310 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1945,402,711 - 45,481,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0965,071,990 - 65,151,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1993,133,691 - 93,212,391 (-)NCBIpanpan1.1PanPan1.1panPan2
BARX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,036,444 - 98,039,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,036,227 - 98,039,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,432,652 - 98,436,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,654,250 - 98,657,636 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,654,081 - 98,657,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,269,046 - 98,272,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,005,186 - 98,008,562 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,759,696 - 98,763,082 (+)NCBIUU_Cfam_GSD_1.0
Barx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,938,453 - 8,946,971 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493700088,529 - 92,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493700088,529 - 96,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BARX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,284,464 - 43,288,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,284,609 - 43,288,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,604,095 - 44,607,784 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Barx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248682,679,590 - 2,683,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248682,679,590 - 2,683,155 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005080   ⟹   ENSCSAP00000003314
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl12104,303,265 - 104,306,251 (-)Ensembl
RefSeq Acc Id: XM_007969800   ⟹   XP_007967991
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.112104,299,516 - 104,306,464 (-)NCBI
Vero_WHO_p1.0NW_02366603892,615,149 - 92,618,888 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007967991 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003314
  ENSCSAP00000003314.1
RefSeq Acc Id: XP_007967991   ⟸   XM_007969800
- UniProtKB: A0A0D9R3X5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003314   ⟸   ENSCSAT00000005080


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005080.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeobox_TF UniProtKB/TrEMBL
  HTH_motif UniProtKB/TrEMBL
KEGG Report csab:103219777 UniProtKB/TrEMBL
NCBI Gene BARX1 ENTREZGENE
PANTHER BARX HOMEOBOX 1 UniProtKB/TrEMBL
  HOMEO BOX HB9 LIKE A-RELATED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
  HTHREPRESSR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A0D9R3X5 ENTREZGENE, UniProtKB/TrEMBL