GCN1 (GCN1 activator of EIF2AK4) - Rat Genome Database

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Gene: GCN1 (GCN1 activator of EIF2AK4) Sus scrofa
Analyze
Symbol: GCN1
Name: GCN1 activator of EIF2AK4
RGD ID: 13879618
Description: ENCODES a protein that exhibits molecular adaptor activity (inferred); protein kinase regulator activity (inferred); protein serine/threonine kinase activator activity (inferred); INVOLVED IN protein-RNA covalent cross-linking repair (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eIF-2-alpha kinase activator GCN1; GCN1 general control of amino-acid synthesis 1-like 1; GCN1, eIF2 alpha kinase activator homolog; GCN1L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,146,472 - 40,218,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,151,415 - 40,218,183 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,713,772 - 42,738,750 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IBA,IEA)
cytosolic ribosome  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,146,472 - 40,218,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,151,415 - 40,218,183 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,713,772 - 42,738,750 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,127,202 - 120,194,715 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,127,202 - 120,194,715 (-)EnsemblGRCh38hg38GRCh38
GRCh3712120,565,006 - 120,632,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,049,397 - 119,116,896 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412119,027,735 - 119,095,233NCBI
Celera12120,198,130 - 120,265,628 (-)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,574,069 - 117,641,060 (-)NCBIHuRef
CHM1_112120,532,993 - 120,600,505 (-)NCBICHM1_1
T2T-CHM13v2.012120,114,374 - 120,181,877 (-)NCBIT2T-CHM13v2.0
Gcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,703,177 - 115,760,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,703,313 - 115,760,713 (+)EnsemblGRCm39 Ensembl
GRCm385115,565,117 - 115,622,654 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,565,254 - 115,622,654 (+)EnsemblGRCm38mm10GRCm38
MGSCv375116,015,272 - 116,072,663 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,826,251 - 115,883,650 (+)NCBIMGSCv36mm8
Celera5112,670,413 - 112,723,868 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Gcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,652,273 - 46,715,119 (-)NCBIGRCr8
mRatBN7.21240,991,512 - 41,052,661 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,991,512 - 41,052,555 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,158,685 - 42,219,872 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,772,334 - 42,833,527 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,832,873 - 41,894,066 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,728,684 - 46,789,696 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,728,699 - 46,789,726 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,527,293 - 48,587,188 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,253,048 - 42,313,931 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1242,614,520 - 42,675,976 (-)NCBICelera
Cytogenetic Map12q16NCBI
Gcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,416,237 - 11,474,207 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,416,222 - 11,474,791 (+)NCBIChiLan1.0ChiLan1.0
GCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,189,519 - 128,257,684 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,185,896 - 128,253,056 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,702,791 - 117,769,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,078,302 - 121,143,180 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,078,302 - 121,140,829 (-)Ensemblpanpan1.1panPan2
GCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,087,380 - 16,146,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,087,382 - 16,146,813 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,092,431 - 16,151,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,355,070 - 16,414,547 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,355,009 - 16,414,538 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,316,165 - 16,375,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,393,481 - 16,452,480 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,434,569 - 16,493,880 (-)NCBIUU_Cfam_GSD_1.0
Gcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,219,903 - 146,287,212 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668724,031 - 785,533 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668718,961 - 786,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,479,321 - 115,545,465 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,477,825 - 115,545,418 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,561,750 - 129,628,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,446,373 - 13,510,508 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,446,352 - 13,510,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GCN1
1028 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 3 3 5 1 4 1 2 1
Low 4 1 1 19 1 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000010848   ⟹   ENSSSCP00000010565
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,151,424 - 40,218,090 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061657   ⟹   ENSSSCP00000050596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,146,472 - 40,218,107 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084620   ⟹   ENSSSCP00000062607
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,151,417 - 40,218,086 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086424   ⟹   ENSSSCP00000069003
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,151,429 - 40,218,086 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089362   ⟹   ENSSSCP00000066842
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1440,151,417 - 40,218,086 (-)Ensembl
RefSeq Acc Id: XM_021073134   ⟹   XP_020928793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11440,151,415 - 40,218,183 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020928793 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000010565
  ENSSSCP00000010565.5
  ENSSSCP00000050596.2
  ENSSSCP00000062607.1
  ENSSSCP00000066842.1
  ENSSSCP00000069003.1
  ENSSSCP00005045090.1
  ENSSSCP00005045107.1
  ENSSSCP00005045129.1
  ENSSSCP00005045145.1
  ENSSSCP00005045160.1
  ENSSSCP00005045184.1
  ENSSSCP00015030101.1
  ENSSSCP00025028205.1
  ENSSSCP00030011637.1
  ENSSSCP00030011645.1
  ENSSSCP00030011649.1
  ENSSSCP00030011659.1
  ENSSSCP00030011691.1
  ENSSSCP00030011722.1
  ENSSSCP00035019434.1
  ENSSSCP00035019436.1
  ENSSSCP00035019442.1
  ENSSSCP00035019450.1
  ENSSSCP00035019454.1
  ENSSSCP00035019457.1
  ENSSSCP00035019462.1
  ENSSSCP00040046974.1
  ENSSSCP00040047016.1
  ENSSSCP00040047051.1
  ENSSSCP00045004639.1
  ENSSSCP00045004654.1
  ENSSSCP00045004657.1
  ENSSSCP00045004660.1
  ENSSSCP00050007722.1
  ENSSSCP00055019491.1
  ENSSSCP00055019655.1
  ENSSSCP00055019803.1
  ENSSSCP00055020037.1
  ENSSSCP00055020200.1
  ENSSSCP00055020302.1
  ENSSSCP00055020504.1
  ENSSSCP00055020785.1
  ENSSSCP00065016482.1
  ENSSSCP00065016557.1
  ENSSSCP00065016560.1
  ENSSSCP00065016566.1
  ENSSSCP00065016571.1
  ENSSSCP00065016576.1
  ENSSSCP00065016588.1
  ENSSSCP00070011873.1
  ENSSSCP00070011916.1
  ENSSSCP00070011955.1
  ENSSSCP00070011967.1
GenBank Protein JAA53607 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020928793   ⟸   XM_021073134
- UniProtKB: A0A4X1T903 (UniProtKB/TrEMBL),   K9IW91 (UniProtKB/TrEMBL),   A0A8D0VX74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010565   ⟸   ENSSSCT00000010848
RefSeq Acc Id: ENSSSCP00000066842   ⟸   ENSSSCT00000089362
RefSeq Acc Id: ENSSSCP00000062607   ⟸   ENSSSCT00000084620
RefSeq Acc Id: ENSSSCP00000069003   ⟸   ENSSSCT00000086424
RefSeq Acc Id: ENSSSCP00000050596   ⟸   ENSSSCT00000061657
Protein Domains
TOG


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009898 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043916 UniProtKB/TrEMBL
  ENSSSCG00015056170 UniProtKB/TrEMBL
  ENSSSCG00025048486 UniProtKB/TrEMBL
  ENSSSCG00030018739 UniProtKB/TrEMBL
  ENSSSCG00035036668 UniProtKB/TrEMBL
  ENSSSCG00040074747 UniProtKB/TrEMBL
  ENSSSCG00045004014 UniProtKB/TrEMBL
  ENSSSCG00050013637 UniProtKB/TrEMBL
  ENSSSCG00055012460 UniProtKB/TrEMBL
  ENSSSCG00065028853 UniProtKB/TrEMBL
  ENSSSCG00070007329 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010848 ENTREZGENE
  ENSSSCT00000010848.5 UniProtKB/TrEMBL
  ENSSSCT00000061657.3 UniProtKB/TrEMBL
  ENSSSCT00000084620.2 UniProtKB/TrEMBL
  ENSSSCT00000086424.1 UniProtKB/TrEMBL
  ENSSSCT00000089362.2 UniProtKB/TrEMBL
  ENSSSCT00005072167.1 UniProtKB/TrEMBL
  ENSSSCT00005072186.1 UniProtKB/TrEMBL
  ENSSSCT00005072212.1 UniProtKB/TrEMBL
  ENSSSCT00005072228.1 UniProtKB/TrEMBL
  ENSSSCT00005072247.1 UniProtKB/TrEMBL
  ENSSSCT00005072280.1 UniProtKB/TrEMBL
  ENSSSCT00015075038.1 UniProtKB/TrEMBL
  ENSSSCT00025066039.1 UniProtKB/TrEMBL
  ENSSSCT00030026050.1 UniProtKB/TrEMBL
  ENSSSCT00030026066.1 UniProtKB/TrEMBL
  ENSSSCT00030026073.1 UniProtKB/TrEMBL
  ENSSSCT00030026087.1 UniProtKB/TrEMBL
  ENSSSCT00030026150.1 UniProtKB/TrEMBL
  ENSSSCT00030026229.1 UniProtKB/TrEMBL
  ENSSSCT00035048603.1 UniProtKB/TrEMBL
  ENSSSCT00035048606.1 UniProtKB/TrEMBL
  ENSSSCT00035048624.1 UniProtKB/TrEMBL
  ENSSSCT00035048643.1 UniProtKB/TrEMBL
  ENSSSCT00035048649.1 UniProtKB/TrEMBL
  ENSSSCT00035048661.1 UniProtKB/TrEMBL
  ENSSSCT00035048676.1 UniProtKB/TrEMBL
  ENSSSCT00040103561.1 UniProtKB/TrEMBL
  ENSSSCT00040103612.1 UniProtKB/TrEMBL
  ENSSSCT00040103653.1 UniProtKB/TrEMBL
  ENSSSCT00045006782.1 UniProtKB/TrEMBL
  ENSSSCT00045006804.1 UniProtKB/TrEMBL
  ENSSSCT00045006814.1 UniProtKB/TrEMBL
  ENSSSCT00045006821.1 UniProtKB/TrEMBL
  ENSSSCT00050018696.1 UniProtKB/TrEMBL
  ENSSSCT00055024565.1 UniProtKB/TrEMBL
  ENSSSCT00055024763.1 UniProtKB/TrEMBL
  ENSSSCT00055024945.1 UniProtKB/TrEMBL
  ENSSSCT00055025216.1 UniProtKB/TrEMBL
  ENSSSCT00055025429.1 UniProtKB/TrEMBL
  ENSSSCT00055025557.1 UniProtKB/TrEMBL
  ENSSSCT00055025806.1 UniProtKB/TrEMBL
  ENSSSCT00055026163.1 UniProtKB/TrEMBL
  ENSSSCT00065038982.1 UniProtKB/TrEMBL
  ENSSSCT00065039145.1 UniProtKB/TrEMBL
  ENSSSCT00065039152.1 UniProtKB/TrEMBL
  ENSSSCT00065039169.1 UniProtKB/TrEMBL
  ENSSSCT00065039178.1 UniProtKB/TrEMBL
  ENSSSCT00065039189.1 UniProtKB/TrEMBL
  ENSSSCT00065039212.1 UniProtKB/TrEMBL
  ENSSSCT00070014385.1 UniProtKB/TrEMBL
  ENSSSCT00070014441.1 UniProtKB/TrEMBL
  ENSSSCT00070014484.1 UniProtKB/TrEMBL
  ENSSSCT00070014496.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  Lipovitellin_superhlx_dom UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
NCBI Gene GCN1 ENTREZGENE
PANTHER PTHR23346:SF7 UniProtKB/TrEMBL
  TRANSLATIONAL ACTIVATOR GCN1-RELATED UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
SMART TOG UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF48431 UniProtKB/TrEMBL
UniProt A0A287B2G4_PIG UniProtKB/TrEMBL
  A0A4X1T7F0_PIG UniProtKB/TrEMBL
  A0A4X1T903 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T997_PIG UniProtKB/TrEMBL
  A0A4X1TB06_PIG UniProtKB/TrEMBL
  A0A5G2QKM0_PIG UniProtKB/TrEMBL
  A0A5G2QXY5_PIG UniProtKB/TrEMBL
  A0A5G2R8A8_PIG UniProtKB/TrEMBL
  A0A8D0M501_PIG UniProtKB/TrEMBL
  A0A8D0M511_PIG UniProtKB/TrEMBL
  A0A8D0M5W2_PIG UniProtKB/TrEMBL
  A0A8D0M5Y4_PIG UniProtKB/TrEMBL
  A0A8D0TRH2_PIG UniProtKB/TrEMBL
  A0A8D0VUQ9_PIG UniProtKB/TrEMBL
  A0A8D0VVV6_PIG UniProtKB/TrEMBL
  A0A8D0VX74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VX99_PIG UniProtKB/TrEMBL
  A0A8D0VXD8_PIG UniProtKB/TrEMBL
  A0A8D0ZTI4_PIG UniProtKB/TrEMBL
  A0A8D1G771_PIG UniProtKB/TrEMBL
  A0A8D1U1R5_PIG UniProtKB/TrEMBL
  A0A8D1Y7G1_PIG UniProtKB/TrEMBL
  F1RJK5_PIG UniProtKB/TrEMBL
  K9IW91 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88390 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-18 GCN1  GCN1 activator of EIF2AK4  GCN1  GCN1, eIF2 alpha kinase activator homolog  Symbol and/or name change 5135510 APPROVED