BRD1 (bromodomain containing 1) - Rat Genome Database

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Gene: BRD1 (bromodomain containing 1) Sus scrofa
Analyze
Symbol: BRD1
Name: bromodomain containing 1
RGD ID: 13851194
Description: ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (inferred); histone H4K12 acetyltransferase activity (inferred); histone H4K5 acetyltransferase activity (inferred); INVOLVED IN response to electrical stimulus (ortholog); response to immobilization stress (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); bipolar disorder (ortholog); FOUND IN dendrite (ortholog); perikaryon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromodomain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5770,654 - 808,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15774,307 - 808,016 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25111,001,215 - 111,004,246 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BRD1Pigautism spectrum disorder  ISOBRD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:11391650 more ...
BRD1Pigcongenital disorder of glycosylation Ig  ISOBRD1 (Homo sapiens)8554872ClinVar Annotator: match by term: ALG12-congenital disorder of glycosylationClinVarPMID:28492532
BRD1Pigintellectual disability  ISOBRD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
BRD1Pigmetachromatic leukodystrophy  ISOBRD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Metachromatic leukodystrophyClinVarPMID:10477432 more ...
BRD1PigPhelan-McDermid syndrome  ISOBRD1 (Homo sapiens)8554872ClinVar Annotator: match by term: Phelan-McDermid syndromeClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BRD1Pigadenoid cystic carcinoma  ISOBRD1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23685749


Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BRD1Pigdendrite  ISOBrd1 (Rattus norvegicus)9068941 RGDPMID:16924267 and REF_RGD_ID:9586096
BRD1Pighistone H3-K14 acetyltransferase complex part_ofIEAUniProtKB:G5E8P1 more ...150520179 EnsemblGO_REF:0000107
BRD1PigMOZ/MORF histone acetyltransferase complex part_ofIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1PigMOZ/MORF histone acetyltransferase complex part_ofIBAFB:FBgn0033155 more ...150520179 GO_CentralGO_REF:0000033
BRD1Pignuclear speck located_inIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pignucleus located_inIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pigperikaryon  ISOBrd1 (Rattus norvegicus)9068941 RGDPMID:16924267 and REF_RGD_ID:9586096

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BRD1Pighistone H3K14 acetyltransferase activity contributes_toIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pighistone H4K12 acetyltransferase activity contributes_toIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pighistone H4K5 acetyltransferase activity contributes_toIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pighistone H4K8 acetyltransferase activity contributes_toIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pighistone reader activity enablesIEAUniProtKB:G5E8P1 and ensembl:ENSMUSP00000105006150520179 EnsemblGO_REF:0000107
BRD1Pigmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
BRD1Pigprotein binding enablesISOUniProtKB:Q86U869068941 PMID:27142060IntActPMID:27142060
BRD1Pigprotein binding enablesISOUniProtKB:P23508 more ...9068941 PMID:32296183IntActPMID:32296183
BRD1Pigprotein binding enablesISOUniProtKB:P235089068941 PMID:33961781IntActPMID:33961781
BRD1Pigunmodified histone reader activity enablesIEAUniProtKB:O95696 and ensembl:ENSP00000385858150520179 EnsemblGO_REF:0000107
BRD1Pigzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BRD1Pighistone modification pathway   ISOBRD1 (Homo sapiens)9068941 RGDPMID:24686119 and REF_RGD_ID:9479075
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  



BRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5770,654 - 808,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15774,307 - 808,016 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25111,001,215 - 111,004,246 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382249,773,278 - 49,827,873 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2249,773,278 - 49,827,873 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,166,926 - 50,221,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,552,941 - 48,604,456 (-)NCBINCBI36Build 36hg18NCBI36
Build 342248,487,798 - 48,539,313NCBI
Celera2234,088,639 - 34,139,967 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,113,327 - 33,164,844 (-)NCBIHuRef
CHM1_12250,125,661 - 50,177,036 (-)NCBICHM1_1
T2T-CHM13v2.02250,277,574 - 50,332,170 (-)NCBIT2T-CHM13v2.0
Brd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,571,237 - 88,618,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,571,237 - 88,618,436 (-)EnsemblGRCm39 Ensembl
GRCm381588,687,034 - 88,734,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1588,687,034 - 88,734,233 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,517,465 - 88,564,649 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,526,617 - 88,561,996 (-)NCBIMGSCv36mm8
Celera1590,812,128 - 90,859,347 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.17NCBI
Brd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87121,653,859 - 121,701,700 (-)NCBIGRCr8
mRatBN7.27119,774,187 - 119,822,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7119,774,188 - 119,822,031 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,525,863 - 121,573,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07123,752,248 - 123,799,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07123,715,287 - 123,762,868 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07129,676,119 - 129,724,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7129,676,120 - 129,724,303 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,366,020 - 129,413,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47126,987,011 - 127,035,473 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,021,242 - 127,065,922 (-)NCBI
Celera7116,251,952 - 116,296,145 (-)NCBICelera
Cytogenetic Map7q34NCBI
Brd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541332,935,827 - 32,973,804 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541332,935,827 - 32,973,820 (-)NCBIChiLan1.0ChiLan1.0
BRD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22359,672,101 - 59,753,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,356,539 - 62,438,053 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02229,993,902 - 30,048,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12248,998,037 - 49,048,101 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2248,998,037 - 49,048,101 (-)Ensemblpanpan1.1panPan2
BRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,361,043 - 17,396,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1017,361,117 - 17,395,928 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1017,340,501 - 17,376,828 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01018,090,452 - 18,126,790 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1018,090,531 - 18,126,770 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,813,377 - 17,849,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01018,136,398 - 18,172,666 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01018,268,415 - 18,304,716 (+)NCBIUU_Cfam_GSD_1.0
Brd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945909,698 - 976,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629909,680 - 958,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629909,716 - 958,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,261,796 - 32,323,528 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,261,833 - 32,320,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604593,072,511 - 93,124,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752811,451 - 854,039 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752811,457 - 853,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in BRD1
560 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000036838   ⟹   ENSSSCP00000054302
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5770,654 - 808,006 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000040062   ⟹   ENSSSCP00000041410
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5770,654 - 808,006 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000042858   ⟹   ENSSSCP00000039699
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5770,654 - 808,006 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000060209   ⟹   ENSSSCP00000055953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl5776,340 - 807,681 (+)Ensembl
RefSeq Acc Id: XM_021091353   ⟹   XP_020947012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15774,697 - 808,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091354   ⟹   XP_020947013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15774,307 - 808,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091355   ⟹   XP_020947014
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15774,700 - 808,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091356   ⟹   XP_020947015
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15776,735 - 808,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091357   ⟹   XP_020947016
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15774,685 - 802,255 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002343840
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.15774,694 - 808,016 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020947013   ⟸   XM_021091354
- Peptide Label: isoform X1
- UniProtKB: A0A287ABZ8 (UniProtKB/TrEMBL),   A0A4X1URT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947016   ⟸   XM_021091357
- Peptide Label: isoform X4
- UniProtKB: A0A480JY69 (UniProtKB/TrEMBL),   A0A8D1I596 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947012   ⟸   XM_021091353
- Peptide Label: isoform X1
- UniProtKB: A0A287ABZ8 (UniProtKB/TrEMBL),   A0A4X1URT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947014   ⟸   XM_021091355
- Peptide Label: isoform X2
- UniProtKB: A0A8D1CZE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947015   ⟸   XM_021091356
- Peptide Label: isoform X3
- UniProtKB: A0A8D1CZE0 (UniProtKB/TrEMBL)
- Sequence:
Bromo   PHD-type   PWWP



1 to 40 of 81 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000032820 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025037456 UniProtKB/TrEMBL
  ENSSSCG00030035774 UniProtKB/TrEMBL
  ENSSSCG00035059071 UniProtKB/TrEMBL
  ENSSSCG00040055552 UniProtKB/TrEMBL
  ENSSSCG00045020977 UniProtKB/TrEMBL
  ENSSSCG00050066960 UniProtKB/TrEMBL
  ENSSSCG00055023868 UniProtKB/TrEMBL
  ENSSSCG00065012336 UniProtKB/TrEMBL
  ENSSSCG00070019030 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040062 ENTREZGENE
  ENSSSCT00000040062.2 UniProtKB/TrEMBL
  ENSSSCT00025050966.1 UniProtKB/TrEMBL
  ENSSSCT00030049630.1 UniProtKB/TrEMBL
  ENSSSCT00035079131.1 UniProtKB/TrEMBL
  ENSSSCT00035079153.1 UniProtKB/TrEMBL
  ENSSSCT00035079169.1 UniProtKB/TrEMBL
  ENSSSCT00040075275.1 UniProtKB/TrEMBL
  ENSSSCT00040075381.1 UniProtKB/TrEMBL
  ENSSSCT00040075520.1 UniProtKB/TrEMBL
  ENSSSCT00040075615.1 UniProtKB/TrEMBL
  ENSSSCT00045035783.1 UniProtKB/TrEMBL
  ENSSSCT00045035874.1 UniProtKB/TrEMBL
  ENSSSCT00045035966.1 UniProtKB/TrEMBL
  ENSSSCT00045036037.1 UniProtKB/TrEMBL
  ENSSSCT00050091248.1 UniProtKB/TrEMBL
  ENSSSCT00055047026.1 UniProtKB/TrEMBL
  ENSSSCT00065016415.1 UniProtKB/TrEMBL
  ENSSSCT00070037595.1 UniProtKB/TrEMBL
  ENSSSCT00070037603.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  BRPF2_ePHD UniProtKB/TrEMBL
  BRPF2_PHD UniProtKB/TrEMBL
  Enhancer_polycomb-like_N UniProtKB/TrEMBL
  EPHD UniProtKB/TrEMBL
1 to 40 of 81 rows