Ccdc107 (coiled-coil domain containing 107) - Rat Genome Database

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Gene: Ccdc107 (coiled-coil domain containing 107) Mus musculus
Analyze
Symbol: Ccdc107
Name: coiled-coil domain containing 107
RGD ID: 13792742
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110032O22Rik; coiled-coil domain-containing protein 107; RIKEN cDNA 1110032O22 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,493,365 - 43,495,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,492,900 - 43,495,921 (+)EnsemblGRCm39 Ensembl
GRCm38443,493,340 - 43,495,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,492,900 - 43,495,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,506,269 - 43,508,792 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,514,497 - 43,517,020 (+)NCBIMGSCv36mm8
Celera443,527,417 - 43,529,940 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:22039455   PMID:32554809  
PMID:38355793  


Genomics

Comparative Map Data
Ccdc107
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,493,365 - 43,495,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,492,900 - 43,495,921 (+)EnsemblGRCm39 Ensembl
GRCm38443,493,340 - 43,495,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,492,900 - 43,495,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,506,269 - 43,508,792 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,514,497 - 43,517,020 (+)NCBIMGSCv36mm8
Celera443,527,417 - 43,529,940 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.04NCBI
CCDC107
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,658,292 - 35,661,511 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,658,290 - 35,661,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37935,658,289 - 35,661,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,648,311 - 35,651,184 (+)NCBINCBI36Build 36hg18NCBI36
Celera935,591,860 - 35,594,733 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,613,896 - 35,617,109 (+)NCBIHuRef
CHM1_1935,658,115 - 35,661,328 (+)NCBICHM1_1
T2T-CHM13v2.0935,678,944 - 35,682,163 (+)NCBIT2T-CHM13v2.0
Ccdc107
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,545,273 - 62,548,711 (+)NCBIGRCr8
mRatBN7.2557,749,502 - 57,752,920 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,748,999 - 57,752,918 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,729,473 - 59,732,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,548,286 - 61,551,615 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,519,701 - 61,523,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,995,211 - 58,998,620 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,995,249 - 58,997,953 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,519,835 - 63,523,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,973,255 - 59,975,669 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera556,330,086 - 56,333,495 (+)NCBICelera
Cytogenetic Map5q22NCBI
Ccdc107
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472633,405 - 640,175 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955472636,633 - 640,198 (-)NCBIChiLan1.0ChiLan1.0
CCDC107
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,925,635 - 88,929,080 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,931,574 - 88,934,999 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,510,289 - 35,513,195 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,312,688 - 36,315,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,312,688 - 36,315,926 (+)Ensemblpanpan1.1panPan2
CCDC107
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,194,412 - 52,196,817 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,194,293 - 52,196,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,762,407 - 50,764,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01153,259,766 - 53,262,203 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,259,333 - 53,262,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,804,359 - 51,806,795 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,787,838 - 51,790,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,489,973 - 52,492,410 (+)NCBIUU_Cfam_GSD_1.0
Ccdc107
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,109,506 - 167,112,271 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,657,170 - 3,659,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,657,094 - 3,659,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,380,577 - 236,383,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,380,572 - 236,383,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,105,613 - 264,108,706 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC107
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,941,951 - 44,944,935 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,939,377 - 44,944,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603842,046,763 - 42,049,671 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc107
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,130,938 - 5,133,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248685,129,818 - 5,133,780 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc107
67 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:768
Count of miRNA genes:310
Interacting mature miRNAs:345
Transcripts:ENSMUST00000030181, ENSMUST00000107922, ENSMUST00000127324, ENSMUST00000137113, ENSMUST00000140005, ENSMUST00000143073
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000030181   ⟹   ENSMUSP00000030181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,493,362 - 43,495,921 (+)Ensembl
GRCm38.p6 Ensembl443,493,362 - 43,495,921 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107922   ⟹   ENSMUSP00000103555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,493,389 - 43,495,921 (+)Ensembl
GRCm38.p6 Ensembl443,493,389 - 43,495,921 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,493,377 - 43,493,810 (+)Ensembl
GRCm38.p6 Ensembl443,493,377 - 43,493,810 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,493,417 - 43,495,871 (+)Ensembl
GRCm38.p6 Ensembl443,493,417 - 43,495,871 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,493,417 - 43,495,864 (+)Ensembl
GRCm38.p6 Ensembl443,493,417 - 43,495,864 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,492,900 - 43,494,205 (+)Ensembl
GRCm38.p6 Ensembl443,492,900 - 43,494,205 (+)Ensembl
RefSeq Acc Id: NM_001037913   ⟹   NP_001033002
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,493,365 - 43,495,921 (+)NCBI
GRCm38443,493,365 - 43,495,921 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001033002 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH27414 (Get FASTA)   NCBI Sequence Viewer  
  BAB22454 (Get FASTA)   NCBI Sequence Viewer  
  BAB23140 (Get FASTA)   NCBI Sequence Viewer  
  EDL02475 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030181
  ENSMUSP00000030181.6
  ENSMUSP00000103555.3
GenBank Protein Q9DCC3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001033002   ⟸   NM_001037913
- Peptide Label: precursor
- UniProtKB: Q9DCC3 (UniProtKB/Swiss-Prot),   Q9CTB6 (UniProtKB/Swiss-Prot),   A2AIN4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000103555   ⟸   ENSMUST00000107922
Ensembl Acc Id: ENSMUSP00000030181   ⟸   ENSMUST00000030181

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DCC3-F1-model_v2 AlphaFold Q9DCC3 1-242 view protein structure

Promoters
RGD ID:6883222
Promoter ID:EPDNEW_M5062
Type:multiple initiation site
Name:Ccdc107_1
Description:Mus musculus coiled-coil domain containing 107 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38443,493,376 - 43,493,436EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913423 AgrOrtholog
Ensembl Genes ENSMUSG00000028461 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030181 ENTREZGENE
  ENSMUST00000030181.12 UniProtKB/Swiss-Prot
  ENSMUST00000107922.3 UniProtKB/Swiss-Prot
InterPro CCDC107 UniProtKB/Swiss-Prot
KEGG Report mmu:622404 UniProtKB/Swiss-Prot
MGD MGI:1913423 ENTREZGENE
NCBI Gene Ccdc107 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 107 UniProtKB/Swiss-Prot
  PTHR37345 UniProtKB/Swiss-Prot
PhenoGen Ccdc107 PhenoGen
UniProt A2AIN4 ENTREZGENE
  CC107_MOUSE UniProtKB/Swiss-Prot
  Q9CTB6 ENTREZGENE
  Q9DCC3 ENTREZGENE
UniProt Secondary A2AIN4 UniProtKB/Swiss-Prot
  Q9CTB6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Ccdc107  coiled-coil domain containing 107  1110032O22Rik  RIKEN cDNA 1110032O22 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 1110032O22Rik  RIKEN cDNA 1110032O22 gene  Ccdc107  coiled-coil domain containing 107  Symbol and/or name change 5135510 APPROVED