Symbol:
FAM171B
Name:
family with sequence similarity 171 member B
RGD ID:
1354368
HGNC Page
HGNC:29412
Description:
Predicted to be located in membrane. Predicted to be active in synapse.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
family with sequence similarity 171, member B; FLJ34104; KIAA1946
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Mus musculus (house mouse):
Fam171b (family with sequence similarity 171, member B)
HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Fam171b (family with sequence similarity 171, member B)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):
Fam171b (family with sequence similarity 171 member B)
NCBI
Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):
FAM171B (family with sequence similarity 171 member B)
NCBI
Ortholog
Canis lupus familiaris (dog):
FAM171B (family with sequence similarity 171 member B)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Fam171b (family with sequence similarity 171 member B)
NCBI
Ortholog
Sus scrofa (pig):
FAM171B (family with sequence similarity 171 member B)
HGNC
EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):
FAM171B (family with sequence similarity 171 member B)
NCBI
Ortholog
Heterocephalus glaber (naked mole-rat):
Fam171b (family with sequence similarity 171 member B)
NCBI
Ortholog
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Fam171b (family with sequence similarity 171, member B)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Fam171b (family with sequence similarity 171, member B)
Alliance
DIOPT (HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 186,694,060 - 186,765,959 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 186,694,060 - 186,765,959 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 187,558,787 - 187,630,686 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 187,267,034 - 187,336,759 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 187,384,294 - 187,454,016 NCBI Celera 2 181,154,411 - 181,224,139 (+) NCBI Celera Cytogenetic Map 2 q32.1 NCBI HuRef 2 179,418,653 - 179,488,386 (+) NCBI HuRef CHM1_1 2 187,564,785 - 187,634,506 (+) NCBI CHM1_1 T2T-CHM13v2.0 2 187,183,195 - 187,255,094 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
FAM171B Human 1,2-dichloroethane decreases expression ISO RGD:1615649 6480464 ethylene dichloride results in decreased expression of FAM171B mRNA CTD PMID:28189721|PMID:28960355 FAM171B Human 17beta-estradiol multiple interactions EXP 6480464 [Estradiol co-treated with Progesterone] results in increased expression of FAM171B mRNA; [Raloxifene Hydrochloride co-treated with more ... CTD PMID:20660070|PMID:21185374 FAM171B Human 17beta-estradiol decreases expression EXP 6480464 Estradiol results in decreased expression of FAM171B mRNA CTD PMID:31614463 FAM171B Human 17beta-estradiol multiple interactions ISO RGD:1562526 6480464 [estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of FAM171B mRNA CTD PMID:32741896 FAM171B Human 17beta-estradiol increases expression ISO RGD:1615649 6480464 Estradiol results in increased expression of FAM171B mRNA CTD PMID:19484750|PMID:39298647 FAM171B Human 17beta-estradiol 3-benzoate multiple interactions ISO RGD:1562526 6480464 [estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of FAM171B mRNA CTD PMID:32741896 FAM171B Human 2,2',4,4'-Tetrabromodiphenyl ether affects expression ISO RGD:1615649 6480464 2,2',4,4'-tetrabromodiphenyl ether affects the expression of FAM171B mRNA CTD PMID:30294300 FAM171B Human 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:1615649 6480464 Tetrachlorodibenzodioxin affects the expression of FAM171B mRNA CTD PMID:21570461|PMID:24680724 FAM171B Human 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO RGD:1562526 6480464 Tetrachlorodibenzodioxin results in increased expression of FAM171B mRNA CTD PMID:32109520 FAM171B Human 2-hydroxypropanoic acid increases expression EXP 6480464 Lactic Acid results in increased expression of FAM171B mRNA CTD PMID:30851411 FAM171B Human 3,3',5-triiodo-L-thyronine decreases expression EXP 6480464 Triiodothyronine results in decreased expression of FAM171B mRNA CTD PMID:23397585 FAM171B Human 3,4-methylenedioxymethamphetamine decreases expression ISO RGD:1615649 6480464 N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of FAM171B mRNA CTD PMID:20188158 FAM171B Human 3-isobutyl-1-methyl-7H-xanthine multiple interactions EXP 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 FAM171B Human 4,4'-sulfonyldiphenol increases expression ISO RGD:1615649 6480464 bisphenol S results in increased expression of FAM171B mRNA CTD PMID:39298647 FAM171B Human aflatoxin B1 decreases expression ISO RGD:1615649 6480464 Aflatoxin B1 results in decreased expression of FAM171B mRNA CTD PMID:19770486 FAM171B Human aflatoxin B1 increases methylation EXP 6480464 Aflatoxin B1 results in increased methylation of FAM171B intron CTD PMID:30157460 FAM171B Human aflatoxin B1 decreases methylation EXP 6480464 Aflatoxin B1 results in decreased methylation of FAM171B gene CTD PMID:27153756 FAM171B Human arsane affects methylation EXP 6480464 Arsenic affects the methylation of FAM171B gene CTD PMID:25304211 FAM171B Human arsenic atom affects methylation EXP 6480464 Arsenic affects the methylation of FAM171B gene CTD PMID:25304211 FAM171B Human arsenite(3-) decreases expression EXP 6480464 arsenite results in decreased expression of FAM171B mRNA CTD PMID:23974009 FAM171B Human benzo[a]pyrene decreases expression ISO RGD:1615649 6480464 Benzo(a)pyrene results in decreased expression of FAM171B mRNA CTD PMID:19770486 FAM171B Human benzo[a]pyrene affects methylation EXP 6480464 Benzo(a)pyrene affects the methylation of FAM171B promoter CTD PMID:27901495 FAM171B Human bisphenol A decreases expression ISO RGD:1562526 6480464 bisphenol A results in decreased expression of FAM171B mRNA CTD PMID:25181051 FAM171B Human bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of FAM171B mRNA CTD PMID:29275510 FAM171B Human bisphenol A increases expression ISO RGD:1562526 6480464 bisphenol A results in increased expression of FAM171B mRNA CTD PMID:30816183 FAM171B Human bisphenol F multiple interactions EXP 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 FAM171B Human cadmium dichloride decreases expression EXP 6480464 Cadmium Chloride results in decreased expression of FAM171B mRNA CTD PMID:38382870 FAM171B Human cantharidin increases expression ISO RGD:1615649 6480464 Cantharidin results in increased expression of FAM171B mRNA CTD PMID:36907384 FAM171B Human chlorpyrifos decreases expression ISO RGD:1615649 6480464 Chlorpyrifos results in decreased expression of FAM171B mRNA CTD PMID:37019170 FAM171B Human cisplatin multiple interactions EXP 6480464 [Cisplatin co-treated with jinfukang] results in increased expression of FAM171B mRNA CTD PMID:27392435 FAM171B Human cisplatin increases expression EXP 6480464 Cisplatin results in increased expression of FAM171B mRNA CTD PMID:27392435 FAM171B Human coumestrol multiple interactions EXP 6480464 [Coumestrol co-treated with resveratrol] results in decreased expression of FAM171B mRNA CTD PMID:19167446 FAM171B Human cyclosporin A increases expression EXP 6480464 Cyclosporine results in increased expression of FAM171B mRNA CTD PMID:20106945 FAM171B Human DDT decreases expression ISO RGD:1562526 6480464 DDT results in decreased expression of FAM171B mRNA CTD PMID:30207508 FAM171B Human dexamethasone multiple interactions EXP 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 FAM171B Human dichloroacetic acid decreases expression ISO RGD:1615649 6480464 Dichloroacetic Acid results in decreased expression of FAM171B mRNA CTD PMID:28962523 FAM171B Human diuron decreases expression ISO RGD:1562526 6480464 Diuron results in decreased expression of FAM171B mRNA CTD PMID:25152437 FAM171B Human dorsomorphin multiple interactions EXP 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 FAM171B Human epoxiconazole decreases expression ISO RGD:1615649 6480464 epoxiconazole results in decreased expression of FAM171B mRNA CTD PMID:35436446 FAM171B Human ethanol increases expression ISO RGD:1615649 6480464 Ethanol results in increased expression of FAM171B mRNA CTD PMID:30319688 FAM171B Human FR900359 increases phosphorylation EXP 6480464 FR900359 results in increased phosphorylation of FAM171B protein CTD PMID:37730182 FAM171B Human gentamycin increases expression ISO RGD:1562526 6480464 Gentamicins results in increased expression of FAM171B mRNA CTD PMID:33387578 FAM171B Human hydrogen peroxide multiple interactions EXP 6480464 [Hydrogen Peroxide co-treated with Theophylline] results in increased expression of FAM171B protein CTD PMID:18951874 FAM171B Human indometacin multiple interactions EXP 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 FAM171B Human lead(0) affects splicing EXP 6480464 Lead affects the splicing of FAM171B mRNA CTD PMID:28903495 FAM171B Human lead(0) affects expression EXP 6480464 Lead affects the expression of FAM171B mRNA CTD PMID:28903495 FAM171B Human manganese(II) chloride increases expression ISO RGD:1562526 6480464 manganese chloride results in increased expression of FAM171B mRNA CTD PMID:28801915 FAM171B Human methylisothiazolinone increases expression EXP 6480464 2-methyl-4-isothiazolin-3-one results in increased expression of FAM171B mRNA CTD PMID:31629900 FAM171B Human N-methyl-4-phenylpyridinium decreases expression EXP 6480464 1-Methyl-4-phenylpyridinium results in decreased expression of FAM171B mRNA CTD PMID:24810058 FAM171B Human N-methyl-4-phenylpyridinium increases expression ISO RGD:1562526 6480464 1-Methyl-4-phenylpyridinium results in increased expression of FAM171B mRNA CTD PMID:28801915 FAM171B Human nickel sulfate increases expression EXP 6480464 nickel sulfate results in increased expression of FAM171B mRNA CTD PMID:22714537 FAM171B Human okadaic acid increases expression EXP 6480464 Okadaic Acid results in increased expression of FAM171B mRNA CTD PMID:38832940 FAM171B Human ozone multiple interactions ISO RGD:1615649 6480464 [Air Pollutants results in increased abundance of Ozone] which results in decreased expression of FAM171B more ... CTD PMID:27106289 FAM171B Human paracetamol increases expression ISO RGD:1562526 6480464 Acetaminophen results in increased expression of FAM171B mRNA CTD PMID:33387578 FAM171B Human pioglitazone multiple interactions ISO RGD:1615649 6480464 [N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in decreased expression of FAM171B mRNA CTD PMID:27935865 FAM171B Human potassium chromate increases expression EXP 6480464 potassium chromate(VI) results in increased expression of FAM171B mRNA CTD PMID:22714537 FAM171B Human progesterone multiple interactions EXP 6480464 [Estradiol co-treated with Progesterone] results in increased expression of FAM171B mRNA CTD PMID:20660070 FAM171B Human propiconazole decreases expression ISO RGD:1615649 6480464 propiconazole results in decreased expression of FAM171B mRNA CTD PMID:21278054 FAM171B Human rac-lactic acid increases expression EXP 6480464 Lactic Acid results in increased expression of FAM171B mRNA CTD PMID:30851411 FAM171B Human raloxifene multiple interactions EXP 6480464 [Raloxifene Hydrochloride co-treated with Estradiol] results in increased expression of FAM171B mRNA CTD PMID:21185374 FAM171B Human resveratrol multiple interactions EXP 6480464 [Coumestrol co-treated with resveratrol] results in decreased expression of FAM171B mRNA CTD PMID:19167446 FAM171B Human rotenone decreases expression EXP 6480464 Rotenone results in decreased expression of FAM171B mRNA CTD PMID:29955902 FAM171B Human SB 431542 multiple interactions EXP 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 FAM171B Human sodium arsenite increases expression EXP 6480464 sodium arsenite results in increased expression of FAM171B mRNA CTD PMID:22714537|PMID:38568856 FAM171B Human tamoxifen increases expression ISO RGD:1615649 6480464 Tamoxifen results in increased expression of FAM171B mRNA CTD PMID:25123088 FAM171B Human testosterone multiple interactions ISO RGD:1562526 6480464 [estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of FAM171B mRNA CTD PMID:32741896 FAM171B Human tetrachloromethane increases expression ISO RGD:1615649 6480464 Carbon Tetrachloride results in increased expression of FAM171B mRNA CTD PMID:27339419|PMID:31919559 FAM171B Human theophylline multiple interactions EXP 6480464 [Hydrogen Peroxide co-treated with Theophylline] results in increased expression of FAM171B protein CTD PMID:18951874 FAM171B Human thioacetamide decreases expression ISO RGD:1562526 6480464 Thioacetamide results in decreased expression of FAM171B mRNA CTD PMID:34492290 FAM171B Human titanium dioxide decreases expression ISO RGD:1615649 6480464 titanium dioxide results in decreased expression of FAM171B mRNA CTD PMID:29264374 FAM171B Human Tributyltin oxide increases expression ISO RGD:1615649 6480464 bis(tri-n-butyltin)oxide results in increased expression of FAM171B mRNA CTD PMID:25270620 FAM171B Human trichloroethene increases expression ISO RGD:1562526 6480464 Trichloroethylene results in increased expression of FAM171B mRNA CTD PMID:33387578 FAM171B Human trichostatin A decreases expression EXP 6480464 trichostatin A results in decreased expression of FAM171B mRNA CTD PMID:24935251|PMID:26272509 FAM171B Human trichostatin A multiple interactions EXP 6480464 [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 FAM171B Human trovafloxacin decreases expression ISO RGD:1615649 6480464 trovafloxacin results in decreased expression of FAM171B mRNA CTD PMID:35537566 FAM171B Human urethane increases expression EXP 6480464 Urethane results in increased expression of FAM171B mRNA CTD PMID:28818685 FAM171B Human valproic acid increases expression EXP 6480464 Valproic Acid results in increased expression of FAM171B mRNA CTD PMID:19101580|PMID:23179753|PMID:27188386|PMID:28001369 FAM171B Human vincristine decreases expression EXP 6480464 Vincristine results in decreased expression of FAM171B mRNA CTD PMID:23649840 FAM171B Human zoledronic acid decreases expression EXP 6480464 zoledronic acid results in decreased expression of FAM171B mRNA CTD PMID:24714768
1,2-dichloroethane (ISO) 17beta-estradiol (EXP,ISO) 17beta-estradiol 3-benzoate (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 2-hydroxypropanoic acid (EXP) 3,3',5-triiodo-L-thyronine (EXP) 3,4-methylenedioxymethamphetamine (ISO) 3-isobutyl-1-methyl-7H-xanthine (EXP) 4,4'-sulfonyldiphenol (ISO) aflatoxin B1 (EXP,ISO) arsane (EXP) arsenic atom (EXP) arsenite(3-) (EXP) benzo[a]pyrene (EXP,ISO) bisphenol A (EXP,ISO) bisphenol F (EXP) cadmium dichloride (EXP) cantharidin (ISO) chlorpyrifos (ISO) cisplatin (EXP) coumestrol (EXP) cyclosporin A (EXP) DDT (ISO) dexamethasone (EXP) dichloroacetic acid (ISO) diuron (ISO) dorsomorphin (EXP) epoxiconazole (ISO) ethanol (ISO) FR900359 (EXP) gentamycin (ISO) hydrogen peroxide (EXP) indometacin (EXP) lead(0) (EXP) manganese(II) chloride (ISO) methylisothiazolinone (EXP) N-methyl-4-phenylpyridinium (EXP,ISO) nickel sulfate (EXP) okadaic acid (EXP) ozone (ISO) paracetamol (ISO) pioglitazone (ISO) potassium chromate (EXP) progesterone (EXP) propiconazole (ISO) rac-lactic acid (EXP) raloxifene (EXP) resveratrol (EXP) rotenone (EXP) SB 431542 (EXP) sodium arsenite (EXP) tamoxifen (ISO) testosterone (ISO) tetrachloromethane (ISO) theophylline (EXP) thioacetamide (ISO) titanium dioxide (ISO) Tributyltin oxide (ISO) trichloroethene (ISO) trichostatin A (EXP) trovafloxacin (ISO) urethane (EXP) valproic acid (EXP) vincristine (EXP) zoledronic acid (EXP)
FAM171B (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 186,694,060 - 186,765,959 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 186,694,060 - 186,765,959 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 187,558,787 - 187,630,686 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 187,267,034 - 187,336,759 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 187,384,294 - 187,454,016 NCBI Celera 2 181,154,411 - 181,224,139 (+) NCBI Celera Cytogenetic Map 2 q32.1 NCBI HuRef 2 179,418,653 - 179,488,386 (+) NCBI HuRef CHM1_1 2 187,564,785 - 187,634,506 (+) NCBI CHM1_1 T2T-CHM13v2.0 2 187,183,195 - 187,255,094 (+) NCBI T2T-CHM13v2.0
Fam171b (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 83,642,889 - 83,713,878 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 83,642,980 - 83,713,830 (+) Ensembl GRCm39 Ensembl GRCm38 2 83,812,563 - 83,883,534 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 83,812,636 - 83,883,486 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 83,652,885 - 83,721,515 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 83,613,567 - 83,682,197 (+) NCBI MGSCv36 mm8 MGSCv36 2 84,723,794 - 84,798,606 (+) NCBI MGSCv36 mm8 Celera 2 85,461,824 - 85,536,326 (+) NCBI Celera Cytogenetic Map 2 D NCBI cM Map 2 49.33 NCBI
Fam171b (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 89,337,566 - 89,392,973 (+) NCBI GRCr8 mRatBN7.2 3 68,930,755 - 68,986,113 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 68,930,822 - 68,986,127 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 3 71,210,048 - 71,265,419 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 71,210,301 - 71,262,615 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 77,735,454 - 77,790,821 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 67,037,142 - 67,092,329 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 3 68,301,422 - 68,356,773 (+) NCBI Celera Cytogenetic Map 3 q24 NCBI
Fam171b (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955403 11,509,969 - 11,532,616 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955403 11,512,731 - 11,532,550 (-) NCBI ChiLan1.0 ChiLan1.0
FAM171B (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 13 89,372,526 - 89,445,428 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2B 89,387,518 - 89,460,408 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2B 73,985,579 - 74,058,803 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2B 191,784,554 - 191,859,440 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 2B 191,786,078 - 191,859,440 (+) Ensembl panpan1.1 panPan2
FAM171B (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 36 28,934,725 - 28,961,613 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 36 28,905,006 - 28,961,832 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 36 28,801,621 - 28,860,554 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 36 29,128,551 - 29,188,402 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 36 29,128,551 - 29,188,377 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 36 29,185,301 - 29,245,138 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 36 29,120,471 - 29,180,586 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 36 29,288,267 - 29,348,107 (+) NCBI UU_Cfam_GSD_1.0
Fam171b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 146,106,419 - 146,177,805 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936506 10,660,196 - 10,731,659 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936506 10,662,513 - 10,731,653 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
FAM171B (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 15 91,719,511 - 91,798,010 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 15 91,724,228 - 91,798,012 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 15 101,733,215 - 101,806,942 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
FAM171B (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 10 72,229,785 - 72,301,767 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 10 72,229,841 - 72,301,902 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 127,204,559 - 127,276,880 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Fam171b (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 1056 Count of miRNA genes: 617 Interacting mature miRNAs: 721 Transcripts: ENST00000304698 Prediction methods: Miranda, Targetscan Result types: miRGate_prediction
407056965 GWAS705941_H blood protein measurement QTL GWAS705941 (human) 3e-13 blood protein amount (VT:0005416) blood protein measurement (CMO:0000028) 2 186736912 186736913 Human
SHGC-85093
Human Assembly Chr Position (strand) Source JBrowse GRCh37 2 187,578,277 - 187,578,548 UniSTS GRCh37 Build 36 2 187,286,522 - 187,286,793 RGD NCBI36 Celera 2 181,173,894 - 181,174,165 RGD Cytogenetic Map 2 q32.1 UniSTS HuRef 2 179,438,147 - 179,438,418 UniSTS
WI-17454
Human Assembly Chr Position (strand) Source JBrowse GRCh37 2 187,561,011 - 187,561,143 UniSTS GRCh37 Build 36 2 187,269,256 - 187,269,388 RGD NCBI36 Celera 2 181,156,636 - 181,156,768 RGD Cytogenetic Map 2 q32.1 UniSTS HuRef 2 179,420,876 - 179,421,008 UniSTS GeneMap99-GB4 RH Map 2 590.19 UniSTS Whitehead-RH Map 2 918.4 UniSTS
D2S2028
Human Assembly Chr Position (strand) Source JBrowse GRCh37 2 187,623,516 - 187,623,719 UniSTS GRCh37 Build 36 2 187,331,761 - 187,331,964 RGD NCBI36 Celera 2 181,219,141 - 181,219,344 RGD Cytogenetic Map 2 q32.1 UniSTS HuRef 2 179,483,388 - 179,483,591 UniSTS Whitehead-YAC Contig Map 2 UniSTS
WI-11078
Human Assembly Chr Position (strand) Source JBrowse GRCh37 2 187,630,456 - 187,630,630 UniSTS GRCh37 Build 36 2 187,338,701 - 187,338,875 RGD NCBI36 Celera 2 181,226,080 - 181,226,254 RGD Cytogenetic Map 2 q32.1 UniSTS HuRef 2 179,490,326 - 179,490,500 UniSTS GeneMap99-GB4 RH Map 2 591.54 UniSTS Whitehead-RH Map 2 919.8 UniSTS
D2S2500
Human Assembly Chr Position (strand) Source JBrowse GRCh37 2 187,604,970 - 187,605,151 UniSTS GRCh37 Build 36 2 187,313,215 - 187,313,396 RGD NCBI36 Celera 2 181,200,595 - 181,200,776 RGD Cytogenetic Map 2 q32.1 UniSTS HuRef 2 179,464,842 - 179,465,023 UniSTS GeneMap99-GB4 RH Map 2 590.19 UniSTS Whitehead-RH Map 2 917.2 UniSTS Whitehead-YAC Contig Map 2 UniSTS
D2S225
Human Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 2 q32.1 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
entire extraembryonic component
1204
2424
2788
2236
4961
1717
2337
4
615
1814
457
2268
7145
6328
51
3726
845
1729
1612
172
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Ensembl Acc Id:
ENST00000304698 ⟹ ENSP00000304108
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 186,694,060 - 186,765,959 (+) Ensembl
Ensembl Acc Id:
ENST00000612606 ⟹ ENSP00000478477
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 186,694,080 - 186,751,257 (+) Ensembl
RefSeq Acc Id:
NM_177454 ⟹ NP_803237
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 2 186,694,060 - 186,765,959 (+) NCBI GRCh37 2 187,558,789 - 187,630,686 (+) NCBI Build 36 2 187,267,034 - 187,336,759 (+) NCBI Archive Celera 2 181,154,411 - 181,224,139 (+) RGD HuRef 2 179,418,653 - 179,488,386 (+) RGD CHM1_1 2 187,564,785 - 187,634,506 (+) NCBI T2T-CHM13v2.0 2 187,183,195 - 187,255,094 (+) NCBI
Sequence:
GCAGATTGCGCGAGGGGGAGCGAGCGAGCGGGCGCTGCCAGGAGCCCGCAGCCCTGGCGCCCGCCGCCGCCCGGAGCCCCGCAATATGCCGCCGCGGCCCTCTGGCTCTAGGCCATGGCGAGGCTCTG CCGGCGTGTCCCCTGCACCCTGCTTCTCGGCCTGGCCGTGGTGCTGCTGAAAGCGCGGCTGGTCCCCGCGGCCGCCAGAGCGGAACTCAGCCGCTCCGACCTCAGCCTCATCCAACAGCAGCAGCAGC AGCAGCAACAACAACAACAACAGCAAAAGCAGCTGGAGGAGGCTGAGGAGGAGAGGACAGAGGTGCCTGGGGCAACCTCCACCTTGACGGTTCCAGTGTCTGTATTTATGTTGAAAGTCCAGGTGAAT GACATCATCAGTCGTCAGTACCTGAGCCAAGCAGTTGTAGAAGTGTTTGTAAACTACACGAAGACAAATTCCACAGTAACTAAAAGCAATGGAGCAGTGCTGATAAAAGTACCCTACAAATTAGGACT TAGTTTAACTATTATTGCTTACAAAGATGGCTACGTGTTGACCCCTCTGCCTTGGAAAACCAGAAGAATGCCAATATATTCATCAGTTACACTTTCACTGTTCCCGCAAAGCCAAGCAAATATATGGC TATTTGAAGACACTGTTTTAATTACTGGAAAATTAGCTGATGCCAAGTCTCAACCAAGTGTTCAGTTTTCAAAAGCCTTAATTAAACTTCCTGACAACCATCATATTAGCAACGTTACTGGCTATCTT ACAGTTCTACAACAGTTTTTGAAAGTGGACAATTTTCTGCATACAACTGGAATTACTCTCAATAAACCAGGTTTTGAAAACATTGAATTGACTCCTCTTGCTGCAATATGTGTGAAAATATATTCTGG AGGAAAAGAACTAAAGGTCAATGGCTCTATTCAAGTTTCTCTTCCTCTTCTACGTCTGAATGATATAAGTGCAGGGGATCGCATACCTGCTTGGACATTTGATATGAACACAGGTGCTTGGGTAAATC ATGGTCGGGGAATGGTCAAGGAACATAACAATCATTTAATCTGGACATATGATGCACCACATTTGGGGTACTGGATAGCAGCTCCACTTCCAGGAACTAGAGGTTCAGGTATAAATGAAGATTCCAAG GACATAACTGCCTACCACACAGTGTTTCTTACAGCCATATTAGGAGGAACAATAGTCATTGTCATTGGATTTTTTGCTGTACTACTTTGTTATTGCAGGGACAAGTGTGGTACTCCACAGAAAAGAGA AAGAAATATCACTAAACTTGAGGTCCTCAAGAGAGACCAGACAACTTCAACAACACACATAAATCATATCAGTACAGTTAAAGTTGCATTAAAAGCTGAGGACAAGTCGCAGTTATTCAATGCCAAAA ACTCCTCATATAGTCCTCAGAAAAAGGAACCATCAAAGGCAGAAACAGAAGAAAGAGTTTCCATGGTAAAAACTCGGGACGATTTTAAAATCTACAATGAAGATGTTTCATTTCTATCAGTCAATCAA AATAATTACTCAAGAAACCCAACACAGTCTTTGGAGCCCAATGTAGGGTCCAAACAACCTAAACATATTAACAACAATCTATCTTCATCTCTAGGTGATGCTCAAGATGAAAAGAGGTATCTCACAGG TAATGAGGAGGCGTATGGGCGTTCCCATATTCCTGAACAGCTTATGCATATTTACAGCCAACCCATTGCCATCCTTCAAACATCTGACCTTTTCTCCACACCGGAACAATTACATACTGCTAAGTCAG CTACTTTGCCAAGAAAGGGACAGTTAGTCTATGGCCAATTGATGGAACCAGTAAATCGAGAGAACTTTACGCAGACCTTGCCCAAAATGCCAATTCATTCTCATGCACAGCCCCCAGATGCCAGGGAA GAGGATATCATACTTGAAGGTCAACAGAGCCTGCCATCCCAGGCTTCAGATTGGAGCCGATACTCAAGCAGCTTACTGGAATCCGTCTCTGTTCCTGGAACACTAAATGAGGCTGTTGTAATGACTCC ATTTTCATCGGAACTTCAAGGAATTTCAGAACAGACCCTCCTGGAGCTGTCCAAAGGAAAGCCCTCCCCGCATCCCAGAGCCTGGTTTGTGTCTCTTGATGGAAAGCCAGTTGCACAAGTGAGGCACT CCTTTATAGACCTGAAAAAGGGCAAGAGAACCCAGAGCAATGACACCAGTCTGGACTCTGGGGTGGACATGAATGAGCTTCACTCAAGTAGAAAGCTCGAGAGGGAGAAAACATTCATCAAAAGCATG CATCAGCCCAAGATCCTTTACTTAGAAGATTTAGACCTAAGCAGCAGTGAGAGTGGAACCACCGTCTGTTCCCCTGAGGACCCAGCTTTAAGGCACATCCTAGATGGAGGGAGTGGAGTGATCATGGA GCACCCTGGAGAAGAGTCGCCAGGAAGGAAAAGCACTGTTGAAGATTTTGAAGCTAATACATCCCCCACTAAAAGAAGGGGCAGACCACCACTAGCCAAAAGAGATAGCAAGACTAACATCTGGAAGA AGCGAGAGGAACGCCCACTGATTCCCATAAATTAACTCCAATGGGGATTGTGTGTCTGCTGTCTCGTGCTGTTTATTCTTGCTTCTTGTTGTAAATTGCAGTACGAACTTAAGAAAATGAGACTGAGC AATCTCATGGTTCTTGGACATGTCTCAAGCAGAGTAAATGGTAATTCAGTAATCAGAGAGAAAGATACCAAGGAATGCTTTTTCTGGCCTATTCATTTATTTTTGGGTGATGAATTTACAGTATCTAA GTTTTCAAAATGTAAAATAGCTTCAAGATGTTAGTTATCTGAAAATGTTGCTCAGCCAGCCAGTTTGGCCTTGACTCTCTTAAGAATAACAGTGAAATATATACTCCTCAAGTTGCCTCCAAAAATGT TGCCTCTACCATGGTGACTACCCCATGGAACATTTAGAAACAAAACTGACTTCAGGCATCATATTATTTTAAATGTTACTATTACGTCTTCTTCTGCCTATACTTAAAAATAACTTGATAAATGACTT GGACTGATGTTACTCTGGAGTTATCACAAAGAAAATGTTGTTTGGTCTTTAAAGAGCATGTGTATTGTATCATCCCAAACGTAAATCCTACATTTATATAAGATGGGCAAGAAGCTACTTGGTCATTA GAGAGGGAGACACCAGCTCTTTGGTTGTTTTTGGATATAACTTTACAAAATAAGTAAGATGTTAATTTAGAAATTTGAGAAATTAATGCTCTAATACTGAGTTTTTATTTAAAAATTATTTTTTCTTC CCCTCAACAATGAAGCAAGCTTAGCTGTCAAGGGAAACTTTTTACAAATCTGAAAAAAACAATCTATGACTTTGGTTTAAGGCTCACTGATACTTTTAGGCTAAATTGGTTTTAATATATTTCTTCTA TTCTAAAAACCTGAACTCAGTCACTTAAAGGCTATGAAATTTAAAAAAAAAGTCGATGTGAAAGTTTCTTTTGAACACTAAAATAAAATATGTGCAGATAAAATATACATTGATTTGTTTTTCTTAAA TGTTGATGAGAAGAAAAAGAGATGCCATTTTCCTGAGGCTCAAAAATACCTTCAGGATAGTTGTATATCCAGTTATTGATTTTCTTAAAAGATGTGTAAGGAAAACAGTTTCAATTTCAGGGGAAAAG TAAAAGTTTTTCCCTAAGTCACTTAAAGCCTTTGCAACTTCTTTTTTCAGTTTTGTAAGTAATATATCTATGTTCTTTTCATTATAGCAAGCATTCAATGTGAACAACTTTTTAATTAACTCTGAATT ACCATTCATACATCCTAAAAATAAAAGCTCGTTATTCATTAAAATCAACTGATCCCATTTTTCTTAAAATTTCCCTGAAGGCAAATGTCTGAAGCACCTTTCCCTTGTGGGGGTAAAAATCCTAAATT GCTTTATTTTTCATTCCCTCCTATTCAACATGGGAGCAGCATAGAGACCCAAACCATGTAAACAAGTTCAGTGAACCAAAACAGCCACATTAGCTTCAGTAAAATTATAGCTAGATGTGCAATTTTTT CCTCCAACTTCTAACGTGTCAAATAACCTTCCTACTGTTCTGTGTTAACTGAAAGAACATAAAGACCCTAGGCAAATATTTGCTATATATTACCCCAATCCATAGAAGAAATAATGTTTTGGGTAATA CCTAGGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTAGTGATAAGGCTCATAACAATTAATTAGAGAAGGCTTCTTATTGGTCTTACACAGAAAGATACATCAAAAGCAGCATGACTCAAAATGATTT GGAAAAGGTTAAAGTTAGTGCTCTGCTGAAGTGCCTTTGATATAGACTTGCATTATTAGAAGGATATAACATCTTTTTTAAGTGTGCATTTTCTTTCAGTTAACCAAATTAAACAGATGTGCAGTTTT ATTAAAAATATAGACCTAGTGTTTCATGTTGGAACAATAAATATTGCATGTGAGTAGTATTTCTTGTTTTTTGAATACAGTATATATTGATAAATTGTTTATGTTGGAATGAAGTTAGAAACTATATA GCAAAACATTATATTTTAAGTGTTTATTTTTCCCACCTTTAAATAAAAATGTTTCATCTCAGCTTGGTAATGAAATACACATATTGGTATAAGGGTATACCATTCAGGTATGCCACTTATTTTATTCA TTTTTGTGTAAGGGAAATGAGATGATGTATCCCAAGGGCTTTTCTAGAACTACTTGTTTGCTTTCAGAATAAAACCTTATTATTTTTTACACTGCACATGCTGTTCTCAATTGGTAATTATAGGCAAT TTATCTTTTCTAATGATCAAAAGAGTGTGACTTCTCATTTGTGAGTAGTTCACAAATTTCCTGTTAAAAAGCTGAAACCATCTACTTTTTCTTAACCCAAGTGATAATAAACAATATTCACAACTTTC TTAAATTTTTAAATTGAAAACCAAGGTTTTTTCAAATATAAACCTAGATGATTTTGGTCACAAATTGTTAACATTTGTCGATCCTTTGTATATACTTTGGATATATATTAAAGGCAAAACTATCTCTT GACTAACTGATGGATTCATTTACTAAAGCACAGCTGTATGTATTTTTGAATACATATTATGATCTTGAGACTTTATAAATCAATTTTTATGACTTTATGCAGTTGTATAGGGATTATGCCCTTTCAGT TCTATAGGGATTATGCCCTTTTATAATACATAATATACCACAGAGATTACAAATGTTGAGGAATGAAAGCACTTCTTTGCTTTGGCAATCATTTTCAGACCACTATGTGTTTGAATCCTCTGGTATCA ATACGTATTATAGGGTTTTAGAGATCTGTGGGTCAAATGATGTCCCTCAAAACTTCCTAAAAAGGTGAAGCTCAAAGTCACACATTCTTATAAGGCGCATGAGTTTCTCATTTTCCCATGTACGAGCA TTGTAAAGGAATTCAGCTGTATTAATTTCTATTTCAGATCTAGAATTGACATTTTGCCTTCTTGTTTCCAGGTGTTTCTATTTTTTGTATTCTTTCAGAGAAATCTCATATTTCGGTGTATTTATTGC TGTTACTACTATATTTACTGCTGAAAACTGTAACAACCTGAAGATTTGTAAAATGTTAAACATAGTTCATTAAAAATAATAAAATAAATCTAAAATGTA
hide sequence
RefSeq Acc Id:
NP_803237 ⟸ NM_177454
- Peptide Label:
precursor
- UniProtKB:
Q8TF55 (UniProtKB/Swiss-Prot), Q8NB81 (UniProtKB/Swiss-Prot), Q8N970 (UniProtKB/Swiss-Prot), Q8N3K1 (UniProtKB/Swiss-Prot), Q8N1Y4 (UniProtKB/Swiss-Prot), Q53SK3 (UniProtKB/Swiss-Prot), Q8WYR8 (UniProtKB/Swiss-Prot), Q6P995 (UniProtKB/Swiss-Prot), A8K122 (UniProtKB/TrEMBL)
- Sequence:
MARLCRRVPCTLLLGLAVVLLKARLVPAAARAELSRSDLSLIQQQQQQQQQQQQQQKQLEEAEEERTEVPGATSTLTVPVSVFMLKVQVNDIISRQYLSQAVVEVFVNYTKTNSTVTKSNGAVLIKVP YKLGLSLTIIAYKDGYVLTPLPWKTRRMPIYSSVTLSLFPQSQANIWLFEDTVLITGKLADAKSQPSVQFSKALIKLPDNHHISNVTGYLTVLQQFLKVDNFLHTTGITLNKPGFENIELTPLAAICV KIYSGGKELKVNGSIQVSLPLLRLNDISAGDRIPAWTFDMNTGAWVNHGRGMVKEHNNHLIWTYDAPHLGYWIAAPLPGTRGSGINEDSKDITAYHTVFLTAILGGTIVIVIGFFAVLLCYCRDKCGT PQKRERNITKLEVLKRDQTTSTTHINHISTVKVALKAEDKSQLFNAKNSSYSPQKKEPSKAETEERVSMVKTRDDFKIYNEDVSFLSVNQNNYSRNPTQSLEPNVGSKQPKHINNNLSSSLGDAQDEK RYLTGNEEAYGRSHIPEQLMHIYSQPIAILQTSDLFSTPEQLHTAKSATLPRKGQLVYGQLMEPVNRENFTQTLPKMPIHSHAQPPDAREEDIILEGQQSLPSQASDWSRYSSSLLESVSVPGTLNEA VVMTPFSSELQGISEQTLLELSKGKPSPHPRAWFVSLDGKPVAQVRHSFIDLKKGKRTQSNDTSLDSGVDMNELHSSRKLEREKTFIKSMHQPKILYLEDLDLSSSESGTTVCSPEDPALRHILDGGS GVIMEHPGEESPGRKSTVEDFEANTSPTKRRGRPPLAKRDSKTNIWKKREERPLIPIN
hide sequence
Ensembl Acc Id:
ENSP00000478477 ⟸ ENST00000612606
Ensembl Acc Id:
ENSP00000304108 ⟸ ENST00000304698
RGD ID: 6862280
Promoter ID: EPDNEW_H4305
Type: initiation region
Name: FAM171B_1
Description: family with sequence similarity 171 member B
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Human Assembly Chr Position (strand) Source GRCh38 2 186,694,062 - 186,694,122 EPDNEW
RGD ID: 6797276
Promoter ID: HG_KWN:36291
Type: CpG-Island
SO ACC ID: SO:0000170
Source: MPROMDB
Tissues & Cell Lines: K562, Lymphoblastoid
Transcripts: ENST00000272804, OTTHUMT00000334679, UC002UPR.1
Position: Human Assembly Chr Position (strand) Source Build 36 2 187,266,806 - 187,267,306 (+) MPROMDB
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2015-11-24
FAM171B
family with sequence similarity 171 member B
family with sequence similarity 171, member B
Symbol and/or name change
5135510
APPROVED