FAM171B (family with sequence similarity 171 member B) - Rat Genome Database

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Gene: FAM171B (family with sequence similarity 171 member B) Pan paniscus
Analyze
Symbol: FAM171B
Name: family with sequence similarity 171 member B
RGD ID: 11730456
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21389,372,526 - 89,445,428 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B89,387,518 - 89,460,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B73,985,579 - 74,058,803 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B191,784,554 - 191,859,440 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B191,786,078 - 191,859,440 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
synapse  (ISO)

References

Genomics

Comparative Map Data
FAM171B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21389,372,526 - 89,445,428 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B89,387,518 - 89,460,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B73,985,579 - 74,058,803 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B191,784,554 - 191,859,440 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B191,786,078 - 191,859,440 (+)Ensemblpanpan1.1panPan2
FAM171B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382186,694,060 - 186,765,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2186,694,060 - 186,765,959 (+)EnsemblGRCh38hg38GRCh38
GRCh372187,558,787 - 187,630,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362187,267,034 - 187,336,759 (+)NCBINCBI36Build 36hg18NCBI36
Build 342187,384,294 - 187,454,016NCBI
Celera2181,154,411 - 181,224,139 (+)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2179,418,653 - 179,488,386 (+)NCBIHuRef
CHM1_12187,564,785 - 187,634,506 (+)NCBICHM1_1
T2T-CHM13v2.02187,183,195 - 187,255,094 (+)NCBIT2T-CHM13v2.0
Fam171b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39283,642,889 - 83,713,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl283,642,980 - 83,713,830 (+)EnsemblGRCm39 Ensembl
GRCm38283,812,563 - 83,883,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl283,812,636 - 83,883,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37283,652,885 - 83,721,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36283,613,567 - 83,682,197 (+)NCBIMGSCv36mm8
MGSCv36284,723,794 - 84,798,606 (+)NCBIMGSCv36mm8
Celera285,461,824 - 85,536,326 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.33NCBI
Fam171b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,337,566 - 89,392,973 (+)NCBIGRCr8
mRatBN7.2368,930,755 - 68,986,113 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,930,822 - 68,986,127 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0371,210,048 - 71,265,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,210,301 - 71,262,615 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0377,735,454 - 77,790,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,037,142 - 67,092,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera368,301,422 - 68,356,773 (+)NCBICelera
Cytogenetic Map3q24NCBI
Fam171b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540311,509,969 - 11,532,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540311,512,731 - 11,532,550 (-)NCBIChiLan1.0ChiLan1.0
FAM171B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13628,934,725 - 28,961,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3628,905,006 - 28,961,832 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3628,801,621 - 28,860,554 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03629,128,551 - 29,188,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3629,128,551 - 29,188,377 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13629,185,301 - 29,245,138 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03629,120,471 - 29,180,586 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03629,288,267 - 29,348,107 (+)NCBIUU_Cfam_GSD_1.0
Fam171b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303146,106,419 - 146,177,805 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650610,660,196 - 10,731,659 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650610,662,513 - 10,731,653 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM171B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1591,719,511 - 91,798,010 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11591,724,228 - 91,798,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215101,733,215 - 101,806,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM171B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11072,229,785 - 72,301,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1072,229,841 - 72,301,902 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040127,204,559 - 127,276,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam171b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248993,157,724 - 3,189,847 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000049181   ⟹   ENSPPAP00000026348
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B191,786,078 - 191,856,303 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000049205   ⟹   ENSPPAP00000026372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B191,786,240 - 191,859,440 (+)Ensembl
RefSeq Acc Id: XM_034954626   ⟹   XP_034810517
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21389,372,526 - 89,445,428 (+)NCBI
NHGRI_mPanPan12B89,387,518 - 89,460,408 (+)NCBI
Mhudiblu_PPA_v02B73,985,579 - 74,058,803 (+)NCBI
RefSeq Acc Id: XM_034954627   ⟹   XP_034810518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21389,411,018 - 89,445,428 (+)NCBI
NHGRI_mPanPan12B89,425,998 - 89,460,408 (+)NCBI
Mhudiblu_PPA_v02B74,024,056 - 74,058,803 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034810517 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810518 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000026348.1
  ENSPPAP00000026372.1
Reference Protein Sequences
RefSeq Acc Id: XP_034810517   ⟸   XM_034954626
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B9U2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810518   ⟸   XM_034954627
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BBA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000026348   ⟸   ENSPPAT00000049181
RefSeq Acc Id: ENSPPAP00000026372   ⟸   ENSPPAT00000049205
Protein Domains
FAM171 C-terminal   FAM171 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049181.1 UniProtKB/TrEMBL
  ENSPPAT00000049205.1 UniProtKB/TrEMBL
InterPro FAM171_C UniProtKB/TrEMBL
  FAM171_N UniProtKB/TrEMBL
  Uncharacterised_FAM171 UniProtKB/TrEMBL
NCBI Gene FAM171B ENTREZGENE
PANTHER PROTEIN FAM171B UniProtKB/TrEMBL
  PTHR31626 UniProtKB/TrEMBL
Pfam FAM171A1-2-B_C UniProtKB/TrEMBL
  UPF0560 UniProtKB/TrEMBL
UniProt A0A2R9B9U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BBA2 ENTREZGENE, UniProtKB/TrEMBL