ZNF639 (zinc finger protein 639) - Rat Genome Database

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Gene: ZNF639 (zinc finger protein 639) Homo sapiens
Analyze
Symbol: ZNF639
Name: zinc finger protein 639
RGD ID: 1353900
HGNC Page HGNC:30950
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of DNA-templated transcription; positive regulation of cell growth; and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 6230400O18Rik; ANC-2H01; ANC_2H01; Kruppel-like; ZASC1; zinc finger amplified in esophageal squamous cell carcinomas 1; zinc finger protein ANC_2H01; zinc finger protein ZASC1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,322,876 - 179,338,583 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,323,031 - 179,338,583 (+)EnsemblGRCh38hg38GRCh38
GRCh373179,040,664 - 179,056,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,524,245 - 180,536,014 (+)NCBINCBI36Build 36hg18NCBI36
Build 343180,524,252 - 180,536,022NCBI
Celera3177,472,559 - 177,484,329 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,444,494 - 176,456,448 (+)NCBIHuRef
CHM1_13179,004,438 - 179,016,198 (+)NCBICHM1_1
T2T-CHM13v2.03182,126,717 - 182,142,424 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IDA)
nucleus  (IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10737800   PMID:14522885   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16051665   PMID:16182284   PMID:16713569   PMID:19615732   PMID:20484494   PMID:20646234   PMID:21873635  
PMID:23508102   PMID:24204263   PMID:24453475   PMID:25416956   PMID:25814554   PMID:26186194   PMID:26496610   PMID:28514442   PMID:29987050   PMID:32296183   PMID:32814053   PMID:33301849  
PMID:33961781   PMID:34315543  


Genomics

Comparative Map Data
ZNF639
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,322,876 - 179,338,583 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,323,031 - 179,338,583 (+)EnsemblGRCh38hg38GRCh38
GRCh373179,040,664 - 179,056,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,524,245 - 180,536,014 (+)NCBINCBI36Build 36hg18NCBI36
Build 343180,524,252 - 180,536,022NCBI
Celera3177,472,559 - 177,484,329 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,444,494 - 176,456,448 (+)NCBIHuRef
CHM1_13179,004,438 - 179,016,198 (+)NCBICHM1_1
T2T-CHM13v2.03182,126,717 - 182,142,424 (+)NCBIT2T-CHM13v2.0
Zfp639
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,564,355 - 32,574,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl332,564,408 - 32,574,982 (+)EnsemblGRCm39 Ensembl
GRCm38332,510,264 - 32,520,833 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,510,259 - 32,520,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv37332,409,472 - 32,419,755 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36332,702,141 - 32,712,285 (+)NCBIMGSCv36mm8
Celera332,420,669 - 32,430,956 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.75NCBI
Zfp639
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,220,806 - 117,231,132 (+)NCBIGRCr8
mRatBN7.22115,292,431 - 115,305,798 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,292,516 - 115,303,628 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2121,908,616 - 121,916,521 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02120,021,250 - 120,029,155 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02114,722,328 - 114,730,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02118,906,479 - 118,917,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2118,910,587 - 118,916,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,564,008 - 138,574,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42118,718,400 - 118,725,490 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2110,405,404 - 110,413,313 (+)NCBICelera
Cytogenetic Map2q24NCBI
Znf639
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,516,973 - 8,522,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,513,192 - 8,522,689 (+)NCBIChiLan1.0ChiLan1.0
ZNF639
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22177,189,565 - 177,202,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13177,194,303 - 177,207,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,353,400 - 176,366,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,527,753 - 184,539,890 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,533,061 - 184,539,270 (+)Ensemblpanpan1.1panPan2
ZNF639
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13412,767,067 - 12,775,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,909,762 - 16,920,835 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03412,663,418 - 12,674,506 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3412,664,030 - 12,675,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13412,716,049 - 12,727,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03412,698,299 - 12,709,384 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03412,937,783 - 12,948,869 (+)NCBIUU_Cfam_GSD_1.0
Znf639
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,378,770 - 109,389,083 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365663,831,942 - 3,837,957 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365663,831,234 - 3,841,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF639
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,370,544 - 117,384,041 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,370,496 - 117,384,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF639
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11510,102,800 - 10,107,108 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606318,984,329 - 18,996,260 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf639
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473057,078,794 - 57,084,254 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473057,074,036 - 57,087,489 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF639
10 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3 copy number gain See cases [RCV000051725] Chr3:147521892..198096565 [GRCh38]
Chr3:147239679..197823436 [GRCh37]
Chr3:148722369..199307833 [NCBI36]
Chr3:3q24-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3 copy number gain See cases [RCV000051726] Chr3:157293378..198134727 [GRCh38]
Chr3:157011167..197861598 [GRCh37]
Chr3:158493861..199345995 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q26.32-29(chr3:178411707-198110319)x3 copy number gain See cases [RCV000051736] Chr3:178411707..198110319 [GRCh38]
Chr3:178129495..197837190 [GRCh37]
Chr3:179612189..199321587 [NCBI36]
Chr3:3q26.32-29		 pathogenic
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|See cases [RCV000051723] Chr3:137126982..198110178 [GRCh38]
Chr3:136845824..197837049 [GRCh37]
Chr3:138328514..199321446 [NCBI36]
Chr3:3q22.3-29		 pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29		 pathogenic
GRCh38/hg38 3q26.2-29(chr3:168167568-198110178)x3 copy number gain See cases [RCV000137106] Chr3:168167568..198110178 [GRCh38]
Chr3:167885356..197837049 [GRCh37]
Chr3:169368050..199321446 [NCBI36]
Chr3:3q26.2-29		 pathogenic
GRCh38/hg38 3q26.32-29(chr3:176439911-198118383)x3 copy number gain See cases [RCV000138009] Chr3:176439911..198118383 [GRCh38]
Chr3:176157699..197845254 [GRCh37]
Chr3:177640393..199329651 [NCBI36]
Chr3:3q26.32-29		 pathogenic|likely benign
GRCh38/hg38 3q26.32-29(chr3:176168525-198118383)x3 copy number gain See cases [RCV000138662] Chr3:176168525..198118383 [GRCh38]
Chr3:175886313..197845254 [GRCh37]
Chr3:177369007..199329651 [NCBI36]
Chr3:3q26.32-29		 pathogenic
GRCh38/hg38 3q26.1-26.33(chr3:165158611-180130168)x3 copy number gain See cases [RCV000139359] Chr3:165158611..180130168 [GRCh38]
Chr3:164876399..179847956 [GRCh37]
Chr3:166359093..181330650 [NCBI36]
Chr3:3q26.1-26.33		 pathogenic
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3 copy number gain See cases [RCV000139435] Chr3:152100512..198118383 [GRCh38]
Chr3:151818301..197845254 [GRCh37]
Chr3:153300991..199329651 [NCBI36]
Chr3:3q25.1-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3 copy number gain See cases [RCV000140849] Chr3:156321878..198113452 [GRCh38]
Chr3:156039667..197840323 [GRCh37]
Chr3:157522361..199324720 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3 copy number gain See cases [RCV000142310] Chr3:156118441..198125115 [GRCh38]
Chr3:155836230..197851986 [GRCh37]
Chr3:157318924..199336383 [NCBI36]
Chr3:3q25.31-29		 pathogenic
GRCh38/hg38 3q26.1-28(chr3:167717962-188365272)x3 copy number gain See cases [RCV000142107] Chr3:167717962..188365272 [GRCh38]
Chr3:167435750..188083060 [GRCh37]
Chr3:168918444..189565754 [NCBI36]
Chr3:3q26.1-28		 likely pathogenic
GRCh38/hg38 3q26.32-26.33(chr3:178391683-179786092)x3 copy number gain See cases [RCV000143712] Chr3:178391683..179786092 [GRCh38]
Chr3:178109471..179503880 [GRCh37]
Chr3:179592165..180986574 [NCBI36]
Chr3:3q26.32-26.33		 likely benign|uncertain significance
GRCh38/hg38 3q26.1-29(chr3:166137209-198125115)x3 copy number gain See cases [RCV000143694] Chr3:166137209..198125115 [GRCh38]
Chr3:165854997..197851986 [GRCh37]
Chr3:167337691..199336383 [NCBI36]
Chr3:3q26.1-29		 pathogenic
GRCh37/hg19 3q24-29(chr3:142995020-192997215)x4 copy number gain See cases [RCV000240256] Chr3:142995020..192997215 [GRCh37]
Chr3:3q24-29		 pathogenic
GRCh37/hg19 3q25.32-29(chr3:158980631-197766890)x3 copy number gain See cases [RCV000447464] Chr3:158980631..197766890 [GRCh37]
Chr3:3q25.32-29		 pathogenic
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333)x3 copy number gain See cases [RCV000446611] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33		 pathogenic
GRCh37/hg19 3q25.2-29(chr3:152356847-197851986)x3 copy number gain See cases [RCV000448608] Chr3:152356847..197851986 [GRCh37]
Chr3:3q25.2-29		 pathogenic
NC_000003.12:g.177772523_185716872dup duplication Currarino triad [RCV000417195] Chr3:177772523..185716872 [GRCh38]
Chr3:3q26.32-27.2		 likely pathogenic
GRCh37/hg19 3q26.32-26.33(chr3:178917597-179094773)x3 copy number gain See cases [RCV000448972] Chr3:178917597..179094773 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q26.32-26.33(chr3:178944833-179245494)x3 copy number gain See cases [RCV000448217] Chr3:178944833..179245494 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q26.32-26.33(chr3:178853769-179369934)x3 copy number gain See cases [RCV000511674] Chr3:178853769..179369934 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3q26.32-26.33(chr3:178940421-179278597)x3 copy number gain not provided [RCV000682333] Chr3:178940421..179278597 [GRCh37]
Chr3:3q26.32-26.33		 likely benign
GRCh37/hg19 3q26.32-26.33(chr3:178990782-179443371)x3 copy number gain not provided [RCV000682334] Chr3:178990782..179443371 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3q26.31-29(chr3:173281266-197838262)x3 copy number gain not provided [RCV000742968] Chr3:173281266..197838262 [GRCh37]
Chr3:3q26.31-29		 pathogenic
GRCh37/hg19 3q26.32-26.33(chr3:178944618-179278768)x3 copy number gain not provided [RCV000742989] Chr3:178944618..179278768 [GRCh37]
Chr3:3q26.32-26.33		 benign
GRCh37/hg19 3q26.32-26.33(chr3:178869440-179400345)x3 copy number gain See cases [RCV000790607] Chr3:178869440..179400345 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q26.2-28(chr3:169617690-190593854)x3 copy number gain not provided [RCV001005487] Chr3:169617690..190593854 [GRCh37]
Chr3:3q26.2-28		 pathogenic
GRCh37/hg19 3q26.33(chr3:179016729-181527320)x1 copy number loss not provided [RCV001259729] Chr3:179016729..181527320 [GRCh37]
Chr3:3q26.33		 pathogenic
GRCh37/hg19 3q26.31-27.3(chr3:175119199-187592480)x3 copy number gain not provided [RCV001795540] Chr3:175119199..187592480 [GRCh37]
Chr3:3q26.31-27.3		 pathogenic
GRCh37/hg19 3q26.2-26.33(chr3:168118411-179867071)x3 copy number gain not provided [RCV001827868] Chr3:168118411..179867071 [GRCh37]
Chr3:3q26.2-26.33		 likely pathogenic
GRCh37/hg19 3q26.32-26.33(chr3:178944833-179245494) copy number gain not specified [RCV002053390] Chr3:178944833..179245494 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333) copy number gain not specified [RCV002053382] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33		 pathogenic
NC_000003.11:g.(?_178947772)_(179144440_?)dup duplication Cowden syndrome [RCV001942966] Chr3:178947772..179144440 [GRCh37]
Chr3:3q26.32-26.33		 uncertain significance
GRCh37/hg19 3q26.31-29(chr3:171558472-197871052)x3 copy number gain Isolated anorectal malformation [RCV002286610] Chr3:171558472..197871052 [GRCh37]
Chr3:3q26.31-29		 likely pathogenic
NM_001303426.2(ZNF639):c.62C>A (p.Ser21Tyr) single nucleotide variant Inborn genetic diseases [RCV003304335] Chr3:179329621 [GRCh38]
Chr3:179047409 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.841G>A (p.Asp281Asn) single nucleotide variant Inborn genetic diseases [RCV002794219] Chr3:179333805 [GRCh38]
Chr3:179051593 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.317A>G (p.Asp106Gly) single nucleotide variant Inborn genetic diseases [RCV002973603] Chr3:179333281 [GRCh38]
Chr3:179051069 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.1351G>A (p.Asp451Asn) single nucleotide variant Inborn genetic diseases [RCV002869949] Chr3:179334315 [GRCh38]
Chr3:179052103 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.284A>G (p.Asp95Gly) single nucleotide variant Inborn genetic diseases [RCV002768311] Chr3:179333103 [GRCh38]
Chr3:179050891 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.199G>T (p.Asp67Tyr) single nucleotide variant Inborn genetic diseases [RCV002788937] Chr3:179333018 [GRCh38]
Chr3:179050806 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.1374G>C (p.Leu458Phe) single nucleotide variant Inborn genetic diseases [RCV002674795] Chr3:179334338 [GRCh38]
Chr3:179052126 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.161A>G (p.Asp54Gly) single nucleotide variant Inborn genetic diseases [RCV002668297] Chr3:179329720 [GRCh38]
Chr3:179047508 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.1450A>G (p.Thr484Ala) single nucleotide variant Inborn genetic diseases [RCV003193643] Chr3:179334414 [GRCh38]
Chr3:179052202 [GRCh37]
Chr3:3q26.33		 uncertain significance
NM_001303426.2(ZNF639):c.464C>G (p.Thr155Arg) single nucleotide variant Inborn genetic diseases [RCV003263335] Chr3:179333428 [GRCh38]
Chr3:179051216 [GRCh37]
Chr3:3q26.33		 uncertain significance
Single allele duplication not provided [RCV003448704] Chr3:176412210..197847235 [GRCh37]
Chr3:3q26.32-29		 pathogenic
Single allele duplication not provided [RCV003448680] Chr3:140154329..197847235 [GRCh37]
Chr3:3q23-29		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:918
Count of miRNA genes:560
Interacting mature miRNAs:606
Transcripts:ENST00000326361, ENST00000466264, ENST00000466663, ENST00000481587, ENST00000483460, ENST00000484866, ENST00000491818, ENST00000494234, ENST00000496856
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
STS-N90567  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,052,184 - 179,052,362UniSTSGRCh37
Build 363180,534,878 - 180,535,056RGDNCBI36
Celera3177,483,193 - 177,483,371RGD
Cytogenetic Map3q26.33UniSTS
HuRef3176,455,312 - 176,455,490UniSTS
GeneMap99-GB4 RH Map3671.06UniSTS
SHGC-77563  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,052,621 - 179,052,806UniSTSGRCh37
Build 363180,535,315 - 180,535,500RGDNCBI36
Celera3177,483,630 - 177,483,815RGD
Cytogenetic Map3q26.33UniSTS
HuRef3176,455,749 - 176,455,934UniSTS
TNG Radiation Hybrid Map399737.0UniSTS
GeneMap99-GB4 RH Map3671.06UniSTS
D3S2945E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,051,245 - 179,051,352UniSTSGRCh37
Build 363180,533,939 - 180,534,046RGDNCBI36
Celera3177,482,254 - 177,482,361RGD
Cytogenetic Map3q26.33UniSTS
HuRef3176,454,373 - 176,454,480UniSTS
D3S2959E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,050,855 - 179,051,131UniSTSGRCh37
Build 363180,533,549 - 180,533,825RGDNCBI36
Celera3177,481,864 - 177,482,140RGD
Cytogenetic Map3q26.33UniSTS
HuRef3176,453,983 - 176,454,259UniSTS
ANC_2H01__4300.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,051,725 - 179,052,610UniSTSGRCh37
Build 363180,534,419 - 180,535,304RGDNCBI36
Celera3177,482,734 - 177,483,619RGD
HuRef3176,454,853 - 176,455,738UniSTS
SHGC-77564  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373179,051,361 - 179,051,508UniSTSGRCh37
Build 363180,534,055 - 180,534,202RGDNCBI36
Celera3177,482,370 - 177,482,517RGD
Cytogenetic Map3q26.33UniSTS
HuRef3176,454,489 - 176,454,636UniSTS
TNG Radiation Hybrid Map399733.0UniSTS
GeneMap99-GB4 RH Map3671.06UniSTS
NCBI RH Map31624.0UniSTS
A002S03  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q26.33UniSTS
HuRef3176,455,328 - 176,455,431UniSTS
GeneMap99-GB4 RH Map3671.06UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1435 1266 847 131 868 119 1786 736 934 270 864 1217 26 1 450 1180 4 1
Low 1004 1652 879 493 1012 346 2571 1459 2800 149 596 396 149 754 1608 2 1
Below cutoff 73 71 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001303425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001303426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB097862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF003924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX188382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF799661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP260931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB457196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ323613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000326361   ⟹   ENSP00000325634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,323,763 - 179,338,583 (+)Ensembl
RefSeq Acc Id: ENST00000466264   ⟹   ENSP00000419650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,325,153 - 179,333,829 (+)Ensembl
RefSeq Acc Id: ENST00000466663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,329,634 - 179,333,730 (+)Ensembl
RefSeq Acc Id: ENST00000481587   ⟹   ENSP00000418628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,323,246 - 179,333,376 (+)Ensembl
RefSeq Acc Id: ENST00000483460
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,328,118 - 179,333,123 (+)Ensembl
RefSeq Acc Id: ENST00000484866   ⟹   ENSP00000418766
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,327,561 - 179,334,612 (+)Ensembl
RefSeq Acc Id: ENST00000491818   ⟹   ENSP00000418870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,323,076 - 179,333,613 (+)Ensembl
RefSeq Acc Id: ENST00000494234   ⟹   ENSP00000417232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,327,744 - 179,333,354 (+)Ensembl
RefSeq Acc Id: ENST00000496856   ⟹   ENSP00000417740
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,323,031 - 179,338,583 (+)Ensembl
RefSeq Acc Id: ENST00000621687   ⟹   ENSP00000477626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,328,294 - 179,334,422 (+)Ensembl
RefSeq Acc Id: NM_001303425   ⟹   NP_001290354
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,338,583 (+)NCBI
CHM1_13179,003,666 - 179,016,201 (+)NCBI
T2T-CHM13v2.03182,126,872 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001303426   ⟹   NP_001290355
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,338,583 (+)NCBI
CHM1_13179,003,666 - 179,016,201 (+)NCBI
T2T-CHM13v2.03182,126,872 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375800   ⟹   NP_001362729
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,126,872 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375802   ⟹   NP_001362731
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,453 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,127,294 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375803   ⟹   NP_001362732
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,126,872 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375804   ⟹   NP_001362733
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,126,872 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375805   ⟹   NP_001362734
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,453 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,127,294 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375806   ⟹   NP_001362735
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,322,876 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,126,717 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375807   ⟹   NP_001362736
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,453 - 179,338,583 (+)NCBI
T2T-CHM13v2.03182,127,294 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016331   ⟹   NP_057415
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,453 - 179,338,583 (+)NCBI
GRCh373179,041,551 - 179,053,325 (+)NCBI
Build 363180,524,245 - 180,536,014 (+)NCBI Archive
Celera3177,472,559 - 177,484,329 (+)RGD
HuRef3176,444,494 - 176,456,448 (+)ENTREZGENE
CHM1_13179,004,438 - 179,016,201 (+)NCBI
T2T-CHM13v2.03182,127,294 - 182,142,424 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017006550   ⟹   XP_016862039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,505 - 179,338,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017006553   ⟹   XP_016862042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,346 - 179,338,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047448257   ⟹   XP_047304213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,326,965 - 179,338,583 (+)NCBI
RefSeq Acc Id: XM_047448258   ⟹   XP_047304214
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,453 - 179,338,583 (+)NCBI
RefSeq Acc Id: XM_054346746   ⟹   XP_054202721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,127,346 - 182,142,424 (+)NCBI
RefSeq Acc Id: XM_054346747   ⟹   XP_054202722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,127,187 - 182,142,424 (+)NCBI
RefSeq Acc Id: XM_054346748   ⟹   XP_054202723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,130,806 - 182,142,424 (+)NCBI
RefSeq Acc Id: XM_054346749   ⟹   XP_054202724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03182,127,294 - 182,142,424 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001290354 (Get FASTA)   NCBI Sequence Viewer  
  NP_001290355 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362729 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362732 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362733 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362734 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362735 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362736 (Get FASTA)   NCBI Sequence Viewer  
  NP_057415 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862039 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862042 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304213 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304214 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202721 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202722 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202723 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202724 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF21240 (Get FASTA)   NCBI Sequence Viewer  
  AAH20500 (Get FASTA)   NCBI Sequence Viewer  
  AAH26181 (Get FASTA)   NCBI Sequence Viewer  
  ABD27860 (Get FASTA)   NCBI Sequence Viewer  
  BAC77610 (Get FASTA)   NCBI Sequence Viewer  
  CAC50572 (Get FASTA)   NCBI Sequence Viewer  
  EAW78413 (Get FASTA)   NCBI Sequence Viewer  
  EAW78414 (Get FASTA)   NCBI Sequence Viewer  
  EAW78415 (Get FASTA)   NCBI Sequence Viewer  
  EAW78416 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000325634
  ENSP00000325634.3
  ENSP00000417232.1
  ENSP00000417740
  ENSP00000417740.1
  ENSP00000418628.1
  ENSP00000418766
  ENSP00000418766.1
  ENSP00000418870.1
  ENSP00000419650.1
  ENSP00000477626
  ENSP00000477626.1
GenBank Protein Q9UID6 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_057415   ⟸   NM_016331
- UniProtKB: A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot),   Q9UID6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001290354   ⟸   NM_001303425
- UniProtKB: A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot),   Q9UID6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001290355   ⟸   NM_001303426
- UniProtKB: A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot),   Q9UID6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016862042   ⟸   XM_017006553
- Peptide Label: isoform X1
- UniProtKB: A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot),   Q9UID6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016862039   ⟸   XM_017006550
- Peptide Label: isoform X1
- UniProtKB: A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot),   Q9UID6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001362735   ⟸   NM_001375806
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362733   ⟸   NM_001375804
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362729   ⟸   NM_001375800
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362732   ⟸   NM_001375803
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362734   ⟸   NM_001375805
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362731   ⟸   NM_001375802
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001362736   ⟸   NM_001375807
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000477626   ⟸   ENST00000621687
RefSeq Acc Id: ENSP00000419650   ⟸   ENST00000466264
RefSeq Acc Id: ENSP00000418870   ⟸   ENST00000491818
RefSeq Acc Id: ENSP00000417232   ⟸   ENST00000494234
RefSeq Acc Id: ENSP00000418628   ⟸   ENST00000481587
RefSeq Acc Id: ENSP00000417740   ⟸   ENST00000496856
RefSeq Acc Id: ENSP00000325634   ⟸   ENST00000326361
RefSeq Acc Id: ENSP00000418766   ⟸   ENST00000484866
RefSeq Acc Id: XP_047304214   ⟸   XM_047448258
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047304213   ⟸   XM_047448257
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054202722   ⟸   XM_054346747
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054202724   ⟸   XM_054346749
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054202721   ⟸   XM_054346746
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054202723   ⟸   XM_054346748
- Peptide Label: isoform X1
- UniProtKB: Q9UID6 (UniProtKB/Swiss-Prot),   A9X3Z9 (UniProtKB/Swiss-Prot),   D3DNR3 (UniProtKB/Swiss-Prot)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UID6-F1-model_v2 AlphaFold Q9UID6 1-485 view protein structure

Promoters
RGD ID:6866338
Promoter ID:EPDNEW_H6334
Type:initiation region
Name:ZNF639_2
Description:zinc finger protein 639
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6335  EPDNEW_H6336  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,322,893 - 179,322,953EPDNEW
RGD ID:6866340
Promoter ID:EPDNEW_H6335
Type:initiation region
Name:ZNF639_1
Description:zinc finger protein 639
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6334  EPDNEW_H6336  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,323,031 - 179,323,091EPDNEW
RGD ID:6866342
Promoter ID:EPDNEW_H6336
Type:initiation region
Name:ZNF639_3
Description:zinc finger protein 639
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6334  EPDNEW_H6335  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383179,325,184 - 179,325,244EPDNEW
RGD ID:6801983
Promoter ID:HG_KWN:46830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000326361,   UC003FJQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363180,522,596 - 180,524,117 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30950 AgrOrtholog
COSMIC ZNF639 COSMIC
Ensembl Genes ENSG00000121864 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000326361 ENTREZGENE
  ENST00000326361.7 UniProtKB/Swiss-Prot
  ENST00000466264.5 UniProtKB/TrEMBL
  ENST00000481587.5 UniProtKB/TrEMBL
  ENST00000484866 ENTREZGENE
  ENST00000484866.5 UniProtKB/Swiss-Prot
  ENST00000491818.5 UniProtKB/TrEMBL
  ENST00000494234.5 UniProtKB/TrEMBL
  ENST00000496856 ENTREZGENE
  ENST00000496856.6 UniProtKB/Swiss-Prot
  ENST00000621687 ENTREZGENE
  ENST00000621687.1 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000121864 GTEx
HGNC ID HGNC:30950 ENTREZGENE
Human Proteome Map ZNF639 Human Proteome Map
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51193 UniProtKB/Swiss-Prot
NCBI Gene 51193 ENTREZGENE
OMIM 619214 OMIM
PANTHER OOCYTE ZINC FINGER PROTEIN XLCOF6-LIKE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER Y-CHROMOSOMAL PROTEIN 1 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA134990796 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A9X3Z9 ENTREZGENE
  C9IZP0_HUMAN UniProtKB/TrEMBL
  C9J3R1_HUMAN UniProtKB/TrEMBL
  D3DNR3 ENTREZGENE
  J3KR59_HUMAN UniProtKB/TrEMBL
  J3KR68_HUMAN UniProtKB/TrEMBL
  Q9UID6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A9X3Z9 UniProtKB/Swiss-Prot
  D3DNR3 UniProtKB/Swiss-Prot