ZNF639 (zinc finger protein 639) - Rat Genome Database

Name: ZNF639
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ZNF639 (zinc finger protein 639) Sus scrofa

Analyze

Symbol:

ZNF639

Name:

zinc finger protein 639

RGD ID:

13930051

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN negative regulation by host of viral transcription (inferred); negative regulation of DNA-templated transcription (inferred); positive regulation by host of viral transcription (inferred); ASSOCIATED WITH Cowden syndrome (ortholog); Currarino syndrome (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF639 (zinc finger protein 639)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Zfp639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Zfp639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf639 (zinc finger protein 639)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,370,544 - 117,384,041 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,370,496 - 117,384,046 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cowden syndrome (ISO)

Currarino syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation by host of viral transcription (IEA)

negative regulation of DNA-templated transcription (IBA,IEA)

positive regulation by host of viral transcription (IEA)

positive regulation of cell growth (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IBA,IEA)

symbiont entry into host cell (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IBA,IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

ZNF639
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,370,544 - 117,384,041 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	117,370,496 - 117,384,046 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZNF639
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,322,876 - 179,338,583 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,323,031 - 179,338,583 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	179,040,664 - 179,056,371 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,524,245 - 180,536,014 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	180,524,252 - 180,536,022	NCBI
Celera	3	177,472,559 - 177,484,329 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,444,494 - 176,456,448 (+)	NCBI		HuRef
CHM1_1	3	179,004,438 - 179,016,198 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,126,717 - 182,142,424 (+)	NCBI		T2T-CHM13v2.0

Zfp639
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,564,355 - 32,574,982 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,564,408 - 32,574,982 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	32,510,264 - 32,520,833 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,510,259 - 32,520,833 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	32,409,472 - 32,419,755 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	32,702,141 - 32,712,285 (+)	NCBI		MGSCv36	mm8
Celera	3	32,420,669 - 32,430,956 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.75	NCBI

Zfp639
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,220,806 - 117,231,132 (+)	NCBI		GRCr8
mRatBN7.2	2	115,292,431 - 115,305,798 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,292,516 - 115,303,628 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	121,908,616 - 121,916,521 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,021,250 - 120,029,155 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,722,328 - 114,730,177 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	118,906,479 - 118,917,491 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	118,910,587 - 118,916,563 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	138,564,008 - 138,574,696 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	118,718,400 - 118,725,490 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	110,405,404 - 110,413,313 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

Znf639
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,516,973 - 8,522,629 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	8,513,192 - 8,522,689 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF639
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,189,565 - 177,202,374 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,194,303 - 177,207,091 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,353,400 - 176,366,142 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,527,753 - 184,539,890 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,533,061 - 184,539,270 (+)	Ensembl	panpan1.1		panPan2

ZNF639
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	12,767,067 - 12,775,995 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	12,766,681 - 12,775,792 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	16,909,762 - 16,920,835 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,663,418 - 12,674,506 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,664,030 - 12,675,266 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	12,716,049 - 12,727,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,698,299 - 12,709,384 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	12,937,783 - 12,948,869 (+)	NCBI		UU_Cfam_GSD_1.0

Znf639
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,378,770 - 109,389,083 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,831,942 - 3,837,957 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,831,234 - 3,841,972 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF639
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	10,102,800 - 10,107,108 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666063	18,984,329 - 18,996,260 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf639
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,078,794 - 57,084,254 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	57,074,036 - 57,087,489 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ZNF639
127 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	2	3	5	2	20	2	3	3
Low		2				3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01049492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000060729 ⟹ ENSSSCP00000057966

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	117,370,544 - 117,384,041 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000093819 ⟹ ENSSSCP00000080296

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	117,370,610 - 117,383,758 (+)	Ensembl

RefSeq Acc Id:

NM_001244656 ⟹ NP_001231585

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	117,370,542 - 117,383,978 (+)	NCBI

Sequence:

show sequence

GAGGGGGCGCGGGCCGCCGGGCCCCCCCCGGCCCTGACTCTCACCTAGTCACCTCCCCTCCCTC
TCTGCGGACCTGGGAGGTGTGCGGCGCAGGCGCGGAGCGAGGCGGCATTTTTTTACCATCTGTG
AAAACCTCTCTGTAATTCATTTTTCCTCACTCCAGTATTAAGAATTATACCAAATTAAAACGAT
ATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTTTACACCCTTCTCGTTATTCAGATTCCT
CTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATTTTTTCTGATCATTGTTACAGTGTTTG
TTCTATGAGACAACCAGACTTAAAATATTTTGACAACAAAGATGATGATTCTGATACAGAGACA
TCAAATGACTTGCCAAAATTTACAGATGGAATCAAGGCCAGAAACAGAAATCAAAACTACCTGG
TTCCCAGTCCTGTACTTAGAATTCTAGACCACACTGCCTTTTCTACAGAAAAATCTGCTGATAT
TGAAATTTGTGATGAAGAGTGTGACTCCCCTGAGTCAGTCAACCAGCAGACTCAAGAGGAAAGC
GCTATAGAAGTTCACACTGCTGAAGATGTTCCAATTGCTGCAGAAGTGCATGCAATTTCTGAAG
ATTATGATATAGAGGCAGAAAACAATTCCTCTGAGAGTCTCCAAGACCAAACTGATGAAGAGCC
ACCAGCTAAACTTTGCAAAATTCTTGATAAGAGCCAAGCTTTGAATGTGACTGCCCAGCAGAAA
TGGCCTTTACTGAGAGCTAATAGCAGTGGCCTTTATAAATGTGAACTTTGTGAGTTCAACAGCA
AATACTTTTCTGATTTGAAGCAGCATATGATCTTGAAACATAAACGAACTGATTCAAATGTGTG
TCGAGTATGCAAAGAAAGTTTCTCTACCAACATGCTTCTGATTGAACATGCCAAACTGCATGAA
GAGGATCCCTACATTTGTAAATACTGTGATTATAAGACAGTTATTTTCGAGAACCTTAGCCAGC
ACATTGCTGACACCCATTTTAGTGATCATCTTTATTGGTGTGAGCAATGTGATGTACAGTTCTC
CTCAAGCAGTGAACTCTACTTGCATTTCCAGGAGCACAGCTGTGATGAACAGTACTTGTGTCAG
TTCTGTGAACATGAAACAAATGATCCAGAAGACTTGCACAGCCATGTGGTAAATGAGCATGCAT
GTAAGTTAATAGAGTTAAGTGATAAGTATAACAATGGAGAACACGGACAGTACAGCCTCTTAAG
CAAAATTACCTTTGACAAATGTAAAAACTTCTTTGTATGTCAAGTATGTGGTTTTCGGAGTAGA
CTTCATACAAACGTTAACAGGCATGTTGCTATTGAACATACTAAAATTTTTCCTCATGTTTGCG
ATGACTGTGGGAAAGGCTTTTCAAGTATGCTAGAATATTGCAAGCATTTAAATTCACATTTATC
AGAAGGCATTTATTTATGTCAGTACTGTGAATATTCAACAGGACAGATTGAAGATCTTAAAATT
CATCTAGATTTCAAACATTCAGCTGATTTACCTCATAAATGTAGTGACTGCTTGATGAGGTTTG
GAAATGAAAGGGAATTAATAAGTCACCTTCCAGTCCATGAGACTTCTTGATTGTTCTCTTTAAC
TTCCGTAATGTTGATGTAATATAATAAATTTGACTTTTTTGAAGATGTTAAAATGGATGATTTT
AAACAATTTATGAGAATTGTCTTTAACAAGTTTTTTAATTCTCCAATTTTTTTGGCATTGCTAG
CTTTTTCAATATGTAATTTATCCTAAATGTGGTATTTTTGATGCATTGTAGTTTGTAGTTTTTA
CCACTTTTGGTGACTGTCATCTTGTTTCTTGCATGTGCTCTGATTTCATAAATTGATAAGAAAC
AGATGTACTGAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021068464 ⟹ XP_020924123

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	117,370,496 - 117,384,046 (+)	NCBI

Sequence:

show sequence

CGGTCCCTCGCCCAGAAGGGACGTGCAGAGGCGCGGAGGTGCCTGCAGGGGGCGCGGGCCGCCG
GGCCACCCCTGGGGCTGGAGGCCGGTGGTCCCTCCCAGGCCGGTTATGTACTGCAGCCACGCCG
CCGGATCCCCGGCCCTGACTCTCACCTAGTCACCTCCCCTCCCTCTCTGCGGACCTGGGAGGTG
TGCGGCGCAGGCGCGGAGCGAGGCGGCATTTTTTTACCATCTGTGAAAACCTCTCTGTAATTCA
TTTTTCCTCACTCCAGTATTAAGAATTATACCAAATTAAAACGATATGAATGAGTATCCTAAAA
AAAGAAAAAGGAAGACTTTACACCCTTCTCGTTATTCAGATTCCTCTGGAATAAGCAGAATTGC
AGATGGATTCAATGGAATTTTTTCTGATCATTGTTACAGTGTTTGTTCTATGAGACAACCAGAC
TTAAAATATTTTGACAACAAAGATGATGATTCTGATACAGAGACATCAAATGACTTGCCAAAAT
TTACAGATGGAATCAAGGCCAGAAACAGAAATCAAAACTACCTGGTTCCCAGTCCTGTACTTAG
AATTCTAGACCACACTGCCTTTTCTACAGAAAAATCTGCTGATATTGAAATTTGTGATGAAGAG
TGTGACTCCCCTGAGTCAGTCAACCAGCAGACTCAAGAGGAAAGCGCTATAGAAGTTCACACTG
CTGAAGATGTTCCAATTGCTGCAGAAGTGCATGCAATTTCTGAAGATTATGATATAGAGGCAGA
AAACAATTCCTCTGAGAGTCTCCAAGACCAAACTGATGAAGAGCCACCAGCTAAACTTTGCAAA
ATTCTTGATAAGAGCCAAGCTTTGAATGTGACTGCCCAGCAGAAATGGCCTTTACTGAGAGCTA
ATAGCAGTGGCCTTTATAAATGTGAACTTTGTGAGTTCAACAGCAAATACTTTTCTGATTTGAA
GCAGCATATGATCTTGAAACATAAACGAACTGATTCAAATGTGTGTCGAGTATGCAAAGAAAGT
TTCTCTACCAACATGCTTCTGATTGAACATGCCAAACTGCATGAAGAGGATCCCTACATTTGTA
AATACTGTGATTATAAGACAGTTATTTTCGAGAACCTTAGCCAGCACATTGCTGACACCCATTT
TAGTGATCATCTTTATTGGTGTGAGCAATGTGATGTACAGTTCTCCTCAAGCAGTGAACTCTAC
TTGCATTTCCAGGAGCACAGCTGTGATGAACAGTACTTGTGTCAGTTCTGTGAACATGAAACAA
ATGATCCAGAAGACTTGCACAGCCATGTGGTAAATGAGCATGCATGTAAGTTAATAGAGTTAAG
TGATAAGTATAACAATGGAGAACACGGACAGTACAGCCTCTTAAGCAAAATTACCTTTGACAAA
TGTAAAAACTTCTTTGTATGTCAAGTATGTGGTTTTCGGAGTAGACTTCATACAAACGTTAACA
GGCATGTTGCTATTGAACATACTAAAATTTTTCCTCATGTTTGCGATGACTGTGGGAAAGGCTT
TTCAAGTATGCTAGAATATTGCAAGCATTTAAATTCACATTTATCAGAAGGCATTTATTTATGT
CAGTACTGTGAATATTCAACAGGACAGATTGAAGATCTTAAAATTCATCTAGATTTCAAACATT
CAGCTGATTTACCTCATAAATGTAGTGACTGCTTGATGAGGTTTGGAAATGAAAGGGAATTAAT
AAGTCACCTTCCAGTCCATGAGACTTCTTGATTGTTCTCTTTAACTTCCGTAATGTTGATGTAA
TATAATAAATTTGACTTTTTTGAAGATGTTAAAATGGATGATTTTAAACAATTTATGAGAATTG
TCTTTAACAAGTTTTTTAATTCTCCAATTTTTTTGGCATTGCTAGCTTTTTCAATATGTAATTT
ATCCTAAATGTGGTATTTTTGATGCATTGTAGTTTGTAGTTTTTACCACTTTTGGTGACTGTCA
TCTTGTTTCTTGCATGTGCTCTGATTTCATAAATTGATAAGAAACAGATGTACTGAAGAAACTA
GACTACGGTTTTCCTTCTGTAAACATAGGTGCTATAAACTTTTTCTTCTTTAAACTCAAAA

hide sequence

RefSeq Acc Id:

XM_021068465 ⟹ XP_020924124

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	117,370,734 - 117,384,046 (+)	NCBI

Sequence:

show sequence

GGCCCGGGGCCTAGCGGGCTGGGCGTAGGGCGCGCGGGGAGGGAGTGGGGCCAGCCCCGCTGAG
CGCCCGGGAGCGCGAGGGCCGGAGCGGCGCTGCCCGCGGGCAGGGCCGCGCGGCCTCTCCGCCC
GCCCTCGGGCGCCTGGGCTGCCGCCGCCTCGGAGCTGCGCCTGGGATGGCTAGGCGGGCCTAGG
GCACTGGCATTTTTTTACCATCTGTGAAAACCTCTCTGTAATTCATTTTTCCTCACTCCAGTAT
TAAGAATTATACCAAATTAAAACGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTTT
ACACCCTTCTCGTTATTCAGATTCCTCTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATT
TTTTCTGATCATTGTTACAGTGTTTGTTCTATGAGACAACCAGACTTAAAATATTTTGACAACA
AAGATGATGATTCTGATACAGAGACATCAAATGACTTGCCAAAATTTACAGATGGAATCAAGGC
CAGAAACAGAAATCAAAACTACCTGGTTCCCAGTCCTGTACTTAGAATTCTAGACCACACTGCC
TTTTCTACAGAAAAATCTGCTGATATTGAAATTTGTGATGAAGAGTGTGACTCCCCTGAGTCAG
TCAACCAGCAGACTCAAGAGGAAAGCGCTATAGAAGTTCACACTGCTGAAGATGTTCCAATTGC
TGCAGAAGTGCATGCAATTTCTGAAGATTATGATATAGAGGCAGAAAACAATTCCTCTGAGAGT
CTCCAAGACCAAACTGATGAAGAGCCACCAGCTAAACTTTGCAAAATTCTTGATAAGAGCCAAG
CTTTGAATGTGACTGCCCAGCAGAAATGGCCTTTACTGAGAGCTAATAGCAGTGGCCTTTATAA
ATGTGAACTTTGTGAGTTCAACAGCAAATACTTTTCTGATTTGAAGCAGCATATGATCTTGAAA
CATAAACGAACTGATTCAAATGTGTGTCGAGTATGCAAAGAAAGTTTCTCTACCAACATGCTTC
TGATTGAACATGCCAAACTGCATGAAGAGGATCCCTACATTTGTAAATACTGTGATTATAAGAC
AGTTATTTTCGAGAACCTTAGCCAGCACATTGCTGACACCCATTTTAGTGATCATCTTTATTGG
TGTGAGCAATGTGATGTACAGTTCTCCTCAAGCAGTGAACTCTACTTGCATTTCCAGGAGCACA
GCTGTGATGAACAGTACTTGTGTCAGTTCTGTGAACATGAAACAAATGATCCAGAAGACTTGCA
CAGCCATGTGGTAAATGAGCATGCATGTAAGTTAATAGAGTTAAGTGATAAGTATAACAATGGA
GAACACGGACAGTACAGCCTCTTAAGCAAAATTACCTTTGACAAATGTAAAAACTTCTTTGTAT
GTCAAGTATGTGGTTTTCGGAGTAGACTTCATACAAACGTTAACAGGCATGTTGCTATTGAACA
TACTAAAATTTTTCCTCATGTTTGCGATGACTGTGGGAAAGGCTTTTCAAGTATGCTAGAATAT
TGCAAGCATTTAAATTCACATTTATCAGAAGGCATTTATTTATGTCAGTACTGTGAATATTCAA
CAGGACAGATTGAAGATCTTAAAATTCATCTAGATTTCAAACATTCAGCTGATTTACCTCATAA
ATGTAGTGACTGCTTGATGAGGTTTGGAAATGAAAGGGAATTAATAAGTCACCTTCCAGTCCAT
GAGACTTCTTGATTGTTCTCTTTAACTTCCGTAATGTTGATGTAATATAATAAATTTGACTTTT
TTGAAGATGTTAAAATGGATGATTTTAAACAATTTATGAGAATTGTCTTTAACAAGTTTTTTAA
TTCTCCAATTTTTTTGGCATTGCTAGCTTTTTCAATATGTAATTTATCCTAAATGTGGTATTTT
TGATGCATTGTAGTTTGTAGTTTTTACCACTTTTGGTGACTGTCATCTTGTTTCTTGCATGTGC
TCTGATTTCATAAATTGATAAGAAACAGATGTACTGAAGAAACTAGACTACGGTTTTCCTTCTG
TAAACATAGGTGCTATAAACTTTTTCTTCTTTAAACTCAAAA

hide sequence

RefSeq Acc Id:

XM_021068466 ⟹ XP_020924125

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	117,370,972 - 117,384,046 (+)	NCBI

Sequence:

show sequence

CTGCGGGAGAGAGCAGGGAAGACCGGATGGCGTCTTTTAAACTGAAATCCTGCTTTCGTTTTCT
GGCGGGATGGCGCTCCCCTCCCCCATTCCGAAGGCAGTTCCACCCCCTGCGAAGACTGCCTCTG
CCCCCCGCGGCTTTTTTCTGAACGCTGACTTTGGGGTCGGGGCTTGGGAAGCCCCGCTAGTCGC
CGGGCTGCGGTGGGGCGGGTGCGTGGCGCGGAGATGGAGACGGCTGCGTCCCGGTGGTTCTTGC
GCGGCCCCTCCGGGCGTCTGGCCCCAAACGCCACGCTGGCCCTCAGGCCTTGCTGGGTGGCATC
TTGACCCTCCGGCGGCGCATCCTGTGCACGCACGGAGAACCGCAACCTTCAGGCGAAGGTCCCG
GCTCTACGTCTCCAGCCAGTAGTCTAAGCCACTTGTTAGGGTGCCTATAACCCCTTTTGGTTTT
GTTTTTCAGTACAACCTAGGGACACGAGTTATTTGAAGCAGGTTATTTCTTAGCAAAGAGAAAA
GCAAGAACGGACACTAAGTTGGATATATAGCGGGCACTAGTTCAAGTTTTCCTGTCGCATTTTT
TTTATTTTCATTTCTTTTAAAAATCTGGAAAATATATGCTTGTTTCAAAATGAGGGTAGAAAAG
AACATGCTTTTAAAACTCTTTAGGGTAAATCTGTAGGGTTTTTTTTTTATTGTAAATGCTTGTC
TTATGTTTATACCAAATAGGAAGAGAATATTTACATTGCACGAAAGGCTTCAGAAAGGTTGAAC
TATTTAAGTGGTGACTGCCTGTTATCTGTAGTGTGTTTTGTATGCAGACGTTCTTATTGTTGAA
AAAAAATGACAGATGGAAAGATGCTGACAAGTGTTTTGCATTTTTTTACCATCTGTGAAAACCT
CTCTGTAATTCATTTTTCCTCACTCCAGTATTAAGAATTATACCAAATTAAAACGATATGAATG
AGTATCCTAAAAAAAGAAAAAGGAAGACTTTACACCCTTCTCGTTATTCAGATTCCTCTGGAAT
AAGCAGAATTGCAGATGGATTCAATGGAATTTTTTCTGATCATTGTTACAGTGTTTGTTCTATG
AGACAACCAGACTTAAAATATTTTGACAACAAAGATGATGATTCTGATACAGAGACATCAAATG
ACTTGCCAAAATTTACAGATGGAATCAAGGCCAGAAACAGAAATCAAAACTACCTGGTTCCCAG
TCCTGTACTTAGAATTCTAGACCACACTGCCTTTTCTACAGAAAAATCTGCTGATATTGAAATT
TGTGATGAAGAGTGTGACTCCCCTGAGTCAGTCAACCAGCAGACTCAAGAGGAAAGCGCTATAG
AAGTTCACACTGCTGAAGATGTTCCAATTGCTGCAGAAGTGCATGCAATTTCTGAAGATTATGA
TATAGAGGCAGAAAACAATTCCTCTGAGAGTCTCCAAGACCAAACTGATGAAGAGCCACCAGCT
AAACTTTGCAAAATTCTTGATAAGAGCCAAGCTTTGAATGTGACTGCCCAGCAGAAATGGCCTT
TACTGAGAGCTAATAGCAGTGGCCTTTATAAATGTGAACTTTGTGAGTTCAACAGCAAATACTT
TTCTGATTTGAAGCAGCATATGATCTTGAAACATAAACGAACTGATTCAAATGTGTGTCGAGTA
TGCAAAGAAAGTTTCTCTACCAACATGCTTCTGATTGAACATGCCAAACTGCATGAAGAGGATC
CCTACATTTGTAAATACTGTGATTATAAGACAGTTATTTTCGAGAACCTTAGCCAGCACATTGC
TGACACCCATTTTAGTGATCATCTTTATTGGTGTGAGCAATGTGATGTACAGTTCTCCTCAAGC
AGTGAACTCTACTTGCATTTCCAGGAGCACAGCTGTGATGAACAGTACTTGTGTCAGTTCTGTG
AACATGAAACAAATGATCCAGAAGACTTGCACAGCCATGTGGTAAATGAGCATGCATGTAAGTT
AATAGAGTTAAGTGATAAGTATAACAATGGAGAACACGGACAGTACAGCCTCTTAAGCAAAATT
ACCTTTGACAAATGTAAAAACTTCTTTGTATGTCAAGTATGTGGTTTTCGGAGTAGACTTCATA
CAAACGTTAACAGGCATGTTGCTATTGAACATACTAAAATTTTTCCTCATGTTTGCGATGACTG
TGGGAAAGGCTTTTCAAGTATGCTAGAATATTGCAAGCATTTAAATTCACATTTATCAGAAGGC
ATTTATTTATGTCAGTACTGTGAATATTCAACAGGACAGATTGAAGATCTTAAAATTCATCTAG
ATTTCAAACATTCAGCTGATTTACCTCATAAATGTAGTGACTGCTTGATGAGGTTTGGAAATGA
AAGGGAATTAATAAGTCACCTTCCAGTCCATGAGACTTCTTGATTGTTCTCTTTAACTTCCGTA
ATGTTGATGTAATATAATAAATTTGACTTTTTTGAAGATGTTAAAATGGATGATTTTAAACAAT
TTATGAGAATTGTCTTTAACAAGTTTTTTAATTCTCCAATTTTTTTGGCATTGCTAGCTTTTTC
AATATGTAATTTATCCTAAATGTGGTATTTTTGATGCATTGTAGTTTGTAGTTTTTACCACTTT
TGGTGACTGTCATCTTGTTTCTTGCATGTGCTCTGATTTCATAAATTGATAAGAAACAGATGTA
CTGAAGAAACTAGACTACGGTTTTCCTTCTGTAAACATAGGTGCTATAAACTTTTTCTTCTTTA
AACTCAAAA

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Protein Sequences


Protein RefSeqs	NP_001231585	(Get FASTA)	NCBI Sequence Viewer
	XP_020924123	(Get FASTA)	NCBI Sequence Viewer
	XP_020924124	(Get FASTA)	NCBI Sequence Viewer
	XP_020924125	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000057966
	ENSSSCP00000057966.2
	ENSSSCP00000080296
	ENSSSCP00000080296.1
	ENSSSCP00005010537.1
	ENSSSCP00005010558.1
	ENSSSCP00005010573.1
	ENSSSCP00015029647.1
	ENSSSCP00025040825.1
	ENSSSCP00030017610.1
	ENSSSCP00035007797.1
	ENSSSCP00040025499.1
	ENSSSCP00045014394.1
	ENSSSCP00050012878.1
	ENSSSCP00055020755.1
	ENSSSCP00060036926.1
	ENSSSCP00065031685.1
	ENSSSCP00065031687.1
	ENSSSCP00065031689.1
	ENSSSCP00065031691.1
	ENSSSCP00070036149.1

RefSeq Acc Id:	XP_020924123 ⟸ XM_021068464
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1V4T2 (UniProtKB/TrEMBL), A0A8W4FLE3 (UniProtKB/TrEMBL), A0A8D1LSA4 (UniProtKB/TrEMBL), A0A8D1C4Q5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNEYPKKRKRKTLHPSRYSDSSGISRIADGFNGIFSDHCYSVCSMRQPDLKYFDNKDDDSDTET SNDLPKFTDGIKARNRNQNYLVPSPVLRILDHTAFSTEKSADIEICDEECDSPESVNQQTQEES AIEVHTAEDVPIAAEVHAISEDYDIEAENNSSESLQDQTDEEPPAKLCKILDKSQALNVTAQQK WPLLRANSSGLYKCELCEFNSKYFSDLKQHMILKHKRTDSNVCRVCKESFSTNMLLIEHAKLHE EDPYICKYCDYKTVIFENLSQHIADTHFSDHLYWCEQCDVQFSSSSELYLHFQEHSCDEQYLCQ FCEHETNDPEDLHSHVVNEHACKLIELSDKYNNGEHGQYSLLSKITFDKCKNFFVCQVCGFRSR LHTNVNRHVAIEHTKIFPHVCDDCGKGFSSMLEYCKHLNSHLSEGIYLCQYCEYSTGQIEDLKI HLDFKHSADLPHKCSDCLMRFGNERELISHLPVHETS hide sequence

RefSeq Acc Id:

NP_001231585 ⟸ NM_001244656

- UniProtKB:

A0A4X1V4T2 (UniProtKB/TrEMBL), A0A8W4FLE3 (UniProtKB/TrEMBL), A0A8D1LSA4 (UniProtKB/TrEMBL), A0A8D1C4Q5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNEYPKKRKRKTLHPSRYSDSSGISRIADGFNGIFSDHCYSVCSMRQPDLKYFDNKDDDSDTET
SNDLPKFTDGIKARNRNQNYLVPSPVLRILDHTAFSTEKSADIEICDEECDSPESVNQQTQEES
AIEVHTAEDVPIAAEVHAISEDYDIEAENNSSESLQDQTDEEPPAKLCKILDKSQALNVTAQQK
WPLLRANSSGLYKCELCEFNSKYFSDLKQHMILKHKRTDSNVCRVCKESFSTNMLLIEHAKLHE
EDPYICKYCDYKTVIFENLSQHIADTHFSDHLYWCEQCDVQFSSSSELYLHFQEHSCDEQYLCQ
FCEHETNDPEDLHSHVVNEHACKLIELSDKYNNGEHGQYSLLSKITFDKCKNFFVCQVCGFRSR
LHTNVNRHVAIEHTKIFPHVCDDCGKGFSSMLEYCKHLNSHLSEGIYLCQYCEYSTGQIEDLKI
HLDFKHSADLPHKCSDCLMRFGNERELISHLPVHETS

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RefSeq Acc Id:	XP_020924124 ⟸ XM_021068465
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1V4T2 (UniProtKB/TrEMBL), A0A8W4FLE3 (UniProtKB/TrEMBL), A0A8D1LSA4 (UniProtKB/TrEMBL), A0A8D1C4Q5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNEYPKKRKRKTLHPSRYSDSSGISRIADGFNGIFSDHCYSVCSMRQPDLKYFDNKDDDSDTET SNDLPKFTDGIKARNRNQNYLVPSPVLRILDHTAFSTEKSADIEICDEECDSPESVNQQTQEES AIEVHTAEDVPIAAEVHAISEDYDIEAENNSSESLQDQTDEEPPAKLCKILDKSQALNVTAQQK WPLLRANSSGLYKCELCEFNSKYFSDLKQHMILKHKRTDSNVCRVCKESFSTNMLLIEHAKLHE EDPYICKYCDYKTVIFENLSQHIADTHFSDHLYWCEQCDVQFSSSSELYLHFQEHSCDEQYLCQ FCEHETNDPEDLHSHVVNEHACKLIELSDKYNNGEHGQYSLLSKITFDKCKNFFVCQVCGFRSR LHTNVNRHVAIEHTKIFPHVCDDCGKGFSSMLEYCKHLNSHLSEGIYLCQYCEYSTGQIEDLKI HLDFKHSADLPHKCSDCLMRFGNERELISHLPVHETS hide sequence

RefSeq Acc Id:	XP_020924125 ⟸ XM_021068466
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1V4T2 (UniProtKB/TrEMBL), A0A8W4FLE3 (UniProtKB/TrEMBL), A0A8D1LSA4 (UniProtKB/TrEMBL), A0A8D1C4Q5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNEYPKKRKRKTLHPSRYSDSSGISRIADGFNGIFSDHCYSVCSMRQPDLKYFDNKDDDSDTET SNDLPKFTDGIKARNRNQNYLVPSPVLRILDHTAFSTEKSADIEICDEECDSPESVNQQTQEES AIEVHTAEDVPIAAEVHAISEDYDIEAENNSSESLQDQTDEEPPAKLCKILDKSQALNVTAQQK WPLLRANSSGLYKCELCEFNSKYFSDLKQHMILKHKRTDSNVCRVCKESFSTNMLLIEHAKLHE EDPYICKYCDYKTVIFENLSQHIADTHFSDHLYWCEQCDVQFSSSSELYLHFQEHSCDEQYLCQ FCEHETNDPEDLHSHVVNEHACKLIELSDKYNNGEHGQYSLLSKITFDKCKNFFVCQVCGFRSR LHTNVNRHVAIEHTKIFPHVCDDCGKGFSSMLEYCKHLNSHLSEGIYLCQYCEYSTGQIEDLKI HLDFKHSADLPHKCSDCLMRFGNERELISHLPVHETS hide sequence

RefSeq Acc Id:

ENSSSCP00000057966 ⟸ ENSSSCT00000060729

RefSeq Acc Id:

ENSSSCP00000080296 ⟸ ENSSSCT00000093819

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038443	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005011437	UniProtKB/TrEMBL
	ENSSSCG00015055206	UniProtKB/TrEMBL
	ENSSSCG00025067704	UniProtKB/TrEMBL
	ENSSSCG00030027370	UniProtKB/TrEMBL
	ENSSSCG00035016760	UniProtKB/TrEMBL
	ENSSSCG00040045185	UniProtKB/TrEMBL
	ENSSSCG00045012294	UniProtKB/TrEMBL
	ENSSSCG00050022888	UniProtKB/TrEMBL
	ENSSSCG00055013271	UniProtKB/TrEMBL
	ENSSSCG00060062568	UniProtKB/TrEMBL
	ENSSSCG00065053115	UniProtKB/TrEMBL
	ENSSSCG00070021617	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000060729	ENTREZGENE
	ENSSSCT00000060729.3	UniProtKB/TrEMBL
	ENSSSCT00000093819	ENTREZGENE
	ENSSSCT00000093819.1	UniProtKB/TrEMBL
	ENSSSCT00005017614.1	UniProtKB/TrEMBL
	ENSSSCT00005017657.1	UniProtKB/TrEMBL
	ENSSSCT00005017689.1	UniProtKB/TrEMBL
	ENSSSCT00015073851.1	UniProtKB/TrEMBL
	ENSSSCT00025093026.1	UniProtKB/TrEMBL
	ENSSSCT00030038299.1	UniProtKB/TrEMBL
	ENSSSCT00035021477.1	UniProtKB/TrEMBL
	ENSSSCT00040060715.1	UniProtKB/TrEMBL
	ENSSSCT00045020905.1	UniProtKB/TrEMBL
	ENSSSCT00050030882.1	UniProtKB/TrEMBL
	ENSSSCT00055026128.1	UniProtKB/TrEMBL
	ENSSSCT00060085354.1	UniProtKB/TrEMBL
	ENSSSCT00065072724.1	UniProtKB/TrEMBL
	ENSSSCT00065072728.1	UniProtKB/TrEMBL
	ENSSSCT00065072730.1	UniProtKB/TrEMBL
	ENSSSCT00065072732.1	UniProtKB/TrEMBL
	ENSSSCT00070042966.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	ssc:100623119	UniProtKB/TrEMBL
NCBI Gene	ZNF639	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER Y-CHROMOSOMAL PROTEIN 1	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287BP60_PIG	UniProtKB/TrEMBL
	A0A4X1V4T2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0ILT1_PIG	UniProtKB/TrEMBL
	A0A8D1C4Q5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1LSA4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FLE3	ENTREZGENE
UniProt Secondary	A0A8W4FLE3	UniProtKB/TrEMBL
VGNC ID	VGNC:95282	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar