ZNF639 (zinc finger protein 639) - Rat Genome Database

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Gene: ZNF639 (zinc finger protein 639) Canis lupus familiaris
Analyze
Symbol: ZNF639
Name: zinc finger protein 639
RGD ID: 12098358
Description: ENCODES a protein that exhibits transcription cis-regulatory region binding (ortholog); INVOLVED IN negative regulation by host of viral transcription (inferred); negative regulation of transcription, DNA-templated (inferred); positive regulation by host of viral transcription (inferred); ASSOCIATED WITH Currarino syndrome (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13412,767,067 - 12,775,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,909,762 - 16,920,835 (+)NCBI
ROS_Cfam_1.03412,663,418 - 12,674,506 (+)NCBI
UMICH_Zoey_3.13412,716,049 - 12,727,098 (+)NCBI
UNSW_CanFamBas_1.03412,698,299 - 12,709,384 (+)NCBI
UU_Cfam_GSD_1.03412,937,783 - 12,948,869 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ZNF639
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13412,767,067 - 12,775,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,909,762 - 16,920,835 (+)NCBI
ROS_Cfam_1.03412,663,418 - 12,674,506 (+)NCBI
UMICH_Zoey_3.13412,716,049 - 12,727,098 (+)NCBI
UNSW_CanFamBas_1.03412,698,299 - 12,709,384 (+)NCBI
UU_Cfam_GSD_1.03412,937,783 - 12,948,869 (+)NCBI
ZNF639
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3179,323,031 - 179,338,583 (+)EnsemblGRCh38hg38GRCh38
GRCh383179,322,876 - 179,338,583 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373179,040,664 - 179,056,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,524,245 - 180,536,014 (+)NCBINCBI36hg18NCBI36
Build 343180,524,252 - 180,536,022NCBI
Celera3177,472,559 - 177,484,329 (+)NCBI
Cytogenetic Map3q26.33NCBI
HuRef3176,444,494 - 176,456,448 (+)NCBIHuRef
CHM1_13179,003,666 - 179,016,201 (+)NCBICHM1_1
Zfp639
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,564,355 - 32,574,982 (+)NCBIGRCm39mm39
GRCm39 Ensembl332,564,408 - 32,574,982 (+)Ensembl
GRCm38332,510,264 - 32,520,833 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,510,259 - 32,520,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv37332,409,472 - 32,419,755 (+)NCBIGRCm37mm9NCBIm37
MGSCv36332,702,141 - 32,712,285 (+)NCBImm8
Celera332,420,669 - 32,430,956 (+)NCBICelera
Cytogenetic Map3A3NCBI
Zfp639
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22115,292,431 - 115,305,798 (+)NCBI
Rnor_6.0 Ensembl2118,910,587 - 118,916,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02118,906,479 - 118,917,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02138,564,008 - 138,574,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42118,718,400 - 118,725,490 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2110,405,404 - 110,413,313 (+)NCBICelera
Cytogenetic Map2q24NCBI
Znf639
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,516,973 - 8,522,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,513,192 - 8,522,689 (+)NCBIChiLan1.0ChiLan1.0
ZNF639
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13184,527,753 - 184,539,890 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,533,061 - 184,539,270 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03176,353,400 - 176,366,142 (+)NCBIMhudiblu_PPA_v0panPan3
Znf639
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,378,770 - 109,389,083 (+)NCBI
SpeTri2.0NW_0049365663,831,234 - 3,841,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF639
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,370,543 - 117,386,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,370,496 - 117,384,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF639
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11510,102,800 - 10,107,108 (-)NCBI
Vero_WHO_p1.0NW_02366606318,984,329 - 18,996,260 (-)NCBI
Znf639
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473057,074,036 - 57,087,489 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 21 5 6 5 6 6 12 10 5
Low 1 1 1 1 8 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014110443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038445595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038583414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_535809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000017922   ⟹   ENSCAFP00000016596
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081873   ⟹   ENSCAFP00000054269
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)Ensembl
RefSeq Acc Id: XM_014110443   ⟹   XP_013965918
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13412,767,500 - 12,775,995 (+)NCBI
Dog10K_Boxer_Tasha3416,910,579 - 16,920,835 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038445593   ⟹   XP_038301521
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03412,663,480 - 12,674,506 (+)NCBI
RefSeq Acc Id: XM_038445594   ⟹   XP_038301522
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03412,663,418 - 12,674,506 (+)NCBI
RefSeq Acc Id: XM_038445595   ⟹   XP_038301523
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03412,664,278 - 12,674,506 (+)NCBI
RefSeq Acc Id: XM_038462826   ⟹   XP_038318754
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3416,909,824 - 16,920,835 (+)NCBI
RefSeq Acc Id: XM_038462827   ⟹   XP_038318755
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3416,909,762 - 16,920,835 (+)NCBI
RefSeq Acc Id: XM_038519772   ⟹   XP_038375700
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13412,716,111 - 12,727,098 (+)NCBI
RefSeq Acc Id: XM_038519773   ⟹   XP_038375701
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13412,716,049 - 12,727,098 (+)NCBI
RefSeq Acc Id: XM_038519774   ⟹   XP_038375702
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13412,716,894 - 12,727,098 (+)NCBI
RefSeq Acc Id: XM_038583411   ⟹   XP_038439339
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03412,937,845 - 12,948,869 (+)NCBI
RefSeq Acc Id: XM_038583412   ⟹   XP_038439340
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03412,937,783 - 12,948,869 (+)NCBI
RefSeq Acc Id: XM_038583414   ⟹   XP_038439342
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03412,938,641 - 12,948,869 (+)NCBI
RefSeq Acc Id: XM_038647825   ⟹   XP_038503753
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03412,698,361 - 12,709,384 (+)NCBI
RefSeq Acc Id: XM_038647826   ⟹   XP_038503754
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03412,698,299 - 12,709,384 (+)NCBI
RefSeq Acc Id: XM_038647827   ⟹   XP_038503755
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03412,699,156 - 12,709,384 (+)NCBI
RefSeq Acc Id: XM_535809   ⟹   XP_535809
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13412,767,067 - 12,775,995 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_535809   ⟸   XM_535809
- Sequence:
RefSeq Acc Id: XP_013965918   ⟸   XM_014110443
- Sequence:
RefSeq Acc Id: ENSCAFP00000054269   ⟸   ENSCAFT00000081873
RefSeq Acc Id: ENSCAFP00000016596   ⟸   ENSCAFT00000017922
RefSeq Acc Id: XP_038375701   ⟸   XM_038519773
RefSeq Acc Id: XP_038375700   ⟸   XM_038519772
RefSeq Acc Id: XP_038375702   ⟸   XM_038519774
RefSeq Acc Id: XP_038503754   ⟸   XM_038647826
RefSeq Acc Id: XP_038503753   ⟸   XM_038647825
RefSeq Acc Id: XP_038503755   ⟸   XM_038647827
RefSeq Acc Id: XP_038301522   ⟸   XM_038445594
RefSeq Acc Id: XP_038301521   ⟸   XM_038445593
RefSeq Acc Id: XP_038301523   ⟸   XM_038445595
RefSeq Acc Id: XP_038318755   ⟸   XM_038462827
RefSeq Acc Id: XP_038318754   ⟸   XM_038462826
RefSeq Acc Id: XP_038439340   ⟸   XM_038583412
RefSeq Acc Id: XP_038439339   ⟸   XM_038583411
RefSeq Acc Id: XP_038439342   ⟸   XM_038583414
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000016596 UniProtKB/TrEMBL
  ENSCAFP00000054269 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017922 UniProtKB/TrEMBL
  ENSCAFT00000081873 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report cfa:478636 UniProtKB/TrEMBL
NCBI Gene ZNF639 ENTREZGENE
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A5F4CNA0_CANLF UniProtKB/TrEMBL
  E2R8J0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48782 ENTREZGENE