Znf639 (zinc finger protein 639) - Rat Genome Database

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Gene: Znf639 (zinc finger protein 639) Ictidomys tridecemlineatus
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Symbol: Znf639
Name: zinc finger protein 639
RGD ID: 12450170
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); protein self-association (ortholog); INVOLVED IN negative regulation by host of viral transcription (ortholog); negative regulation of transcription, DNA-templated (ortholog); positive regulation by host of viral transcription (ortholog); ASSOCIATED WITH Currarino syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,378,770 - 109,389,083 (+)NCBI
SpeTri2.0NW_0049365663,831,234 - 3,841,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Znf639
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,378,770 - 109,389,083 (+)NCBI
SpeTri2.0NW_0049365663,831,234 - 3,841,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF639
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3179,323,031 - 179,338,583 (+)EnsemblGRCh38hg38GRCh38
GRCh383179,322,876 - 179,338,583 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373179,040,664 - 179,056,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,524,245 - 180,536,014 (+)NCBINCBI36hg18NCBI36
Build 343180,524,252 - 180,536,022NCBI
Celera3177,472,559 - 177,484,329 (+)NCBI
Cytogenetic Map3q26.33NCBI
HuRef3176,444,494 - 176,456,448 (+)NCBIHuRef
CHM1_13179,004,438 - 179,016,198 (+)NCBICHM1_1
Zfp639
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,564,355 - 32,574,982 (+)NCBIGRCm39mm39
GRCm39 Ensembl332,564,408 - 32,574,982 (+)Ensembl
GRCm38332,510,264 - 32,520,833 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,510,259 - 32,520,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv37332,409,472 - 32,419,755 (+)NCBIGRCm37mm9NCBIm37
MGSCv36332,702,141 - 32,712,285 (+)NCBImm8
Celera332,420,669 - 32,430,956 (+)NCBICelera
Cytogenetic Map3A3NCBI
Zfp639
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22115,292,431 - 115,305,798 (+)NCBI
Rnor_6.0 Ensembl2118,910,587 - 118,916,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02118,906,479 - 118,917,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02138,564,008 - 138,574,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42118,718,400 - 118,725,490 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2110,405,404 - 110,413,313 (+)NCBICelera
Cytogenetic Map2q24NCBI
Znf639
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,516,973 - 8,522,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,513,192 - 8,522,689 (+)NCBIChiLan1.0ChiLan1.0
ZNF639
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13184,527,753 - 184,539,890 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,533,061 - 184,539,270 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03176,353,400 - 176,366,142 (+)NCBIMhudiblu_PPA_v0panPan3
ZNF639
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13412,767,067 - 12,775,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,766,681 - 12,775,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,909,762 - 16,920,835 (+)NCBI
ROS_Cfam_1.03412,663,418 - 12,674,506 (+)NCBI
UMICH_Zoey_3.13412,716,049 - 12,727,098 (+)NCBI
UNSW_CanFamBas_1.03412,698,299 - 12,709,384 (+)NCBI
UU_Cfam_GSD_1.03412,937,783 - 12,948,869 (+)NCBI
ZNF639
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,370,543 - 117,386,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,370,496 - 117,384,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF639
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11510,102,800 - 10,107,108 (-)NCBI
Vero_WHO_p1.0NW_02366606318,984,329 - 18,996,260 (-)NCBI
Znf639
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473057,074,036 - 57,087,489 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330295   ⟹   XP_005330352
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602109,378,770 - 109,389,083 (+)NCBI
SpeTri2.0NW_0049365663,831,234 - 3,841,972 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330352 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271029 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005330352   ⟸   XM_005330295
- Sequence:
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001442 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000001288 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001436 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf639 ENTREZGENE
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3LYK7_ICTTR UniProtKB/TrEMBL