PCDHA10 (protocadherin alpha 10) - Rat Genome Database

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Gene: PCDHA10 (protocadherin alpha 10) Homo sapiens
Analyze
Symbol: PCDHA10
Name: protocadherin alpha 10
RGD ID: 1352620
HGNC Page HGNC:8664
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within circulatory system development; embryonic placenta development; and gene expression. Predicted to be located in extracellular region and membrane. Predicted to be active in cell-cell contact zone and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CNR8; CNRN8; CNRS8; CRNR8; KIAA0345-like 4; ortholog to mouse CNR8; PCDH-alpha-10; PCDH-ALPHA10; protocadherin alpha-10
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,855,897 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,855,883 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,235,482 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,215,818 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,215,817 - 140,372,113NCBI
Celera5136,312,442 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,380,373 - 135,536,628 (+)NCBIHuRef
CHM1_15139,668,823 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,381,222 - 141,537,634 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10Humanautosomal dominant intellectual developmental disorder 31  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH NEONATAL RESPIRATORY INSUFFICIENCY more ...ClinVarPMID:28492532
PCDHA10Humanfamilial adenomatous polyposis 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
PCDHA10HumanHereditary Neoplastic Syndromes  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
PCDHA10HumanHirschsprung's disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hirschsprung disease more ...ClinVarPMID:25741868
PCDHA10HumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
PCDHA10Humanprostate cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
PCDHA10Humanthrombocytosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ThrombocytosisClinVarPMID:25741868

1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPcdha10 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of PCDHA10 mRNACTDPMID:33387578
PCDHA10Human4,4'-sulfonyldiphenol decreases expressionISOPcdha9 (Mus musculus)6480464bisphenol S results in decreased expression of PCDHA10 mRNACTDPMID:30951980
PCDHA10Human5-azacytidine affects methylationISOPcdha9 (Mus musculus)6480464Azacitidine affects the methylation of PCDHA10 promoterCTDPMID:18204046
PCDHA10Humanaflatoxin B1 increases expressionISOPcdha9 (Mus musculus)6480464Aflatoxin B1 results in increased expression of PCDHA10 mRNACTDPMID:19770486
PCDHA10Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of PCDHA10 geneCTDPMID:27153756
PCDHA10Humanamosite asbestos decreases methylationEXP 6480464Asbestos and Amosite results in decreased methylation of PCDHA10 promoterCTDPMID:29626692
PCDHA10Humanbenzo[a]pyrene decreases methylationISOPcdha9 (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of PCDHA10 intronCTDPMID:27901495
PCDHA10Humanbis(2-ethylhexyl) phthalate increases expressionISOPcdha9 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of PCDHA10 mRNACTDPMID:34319233
PCDHA10Humanbisphenol A decreases expressionISOPcdha10 (Rattus norvegicus)6480464bisphenol A results in decreased expression of PCDHA10 mRNACTDPMID:30816183 and PMID:32528016
PCDHA10Humanbisphenol A decreases expressionISOPcdha9 (Mus musculus)6480464bisphenol A results in decreased expression of PCDHA10 mRNACTDPMID:30951980
PCDHA10Humanbutanal increases methylationEXP 6480464butyraldehyde results in increased methylation of PCDHA10 geneCTDPMID:30002397
PCDHA10Humancadmium dichloride increases methylationISOPcdha10 (Rattus norvegicus)6480464Cadmium Chloride results in increased methylation of PCDHA10 promoterCTDPMID:22457795
PCDHA10Humancrocidolite asbestos decreases methylationEXP 6480464Asbestos and Crocidolite results in decreased methylation of PCDHA10 promoterCTDPMID:29626692
PCDHA10Humanethanol affects expressionISOPcdha9 (Mus musculus)6480464Ethanol affects the expression of PCDHA10 mRNACTDPMID:30319688
PCDHA10Humanethanol increases expressionISOPcdha9 (Mus musculus)6480464Ethanol results in increased expression of PCDHA10 mRNACTDPMID:30319688
PCDHA10Humanfuran increases methylationISOPcdha10 (Rattus norvegicus)6480464furan results in increased methylation of PCDHA10 geneCTDPMID:22079235
PCDHA10Humangentamycin decreases expressionISOPcdha10 (Rattus norvegicus)6480464Gentamicins results in decreased expression of PCDHA10 mRNACTDPMID:33387578
PCDHA10Humanheptanal increases methylationEXP 6480464heptanal results in increased methylation of PCDHA10 geneCTDPMID:30002397
PCDHA10Humanhexanal increases methylationEXP 6480464n-hexanal results in increased methylation of PCDHA10 geneCTDPMID:30002397
PCDHA10Humannonanal increases methylationEXP 6480464nonanal results in increased methylation of PCDHA10 geneCTDPMID:30002397

1 to 20 of 27 rows

Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10Humanaorta development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanaortic valve development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humancell adhesion involved_inTAS 150520179 PMID:10380929PINCPMID:10380929
PCDHA10Humancell adhesion involved_inIBAMGI:106671 more ...150520179 GO_CentralGO_REF:0000033
PCDHA10Humancell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
PCDHA10Humancell adhesion involved_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDHA10Humanembryonic placenta development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humangene expression acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanheart development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanheart valve development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR002126150520179 InterProGO_REF:0000002
PCDHA10Humanin utero embryonic development acts_upstream_of_or_withinIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humannervous system development involved_inTAS 150520179 PMID:10380929PINCPMID:10380929
PCDHA10Humannervous system development involved_inIEAARBA:ARBA00027428150520179 UniProtGO_REF:0000117
1 to 14 of 14 rows

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10Humancell-cell contact zone is_active_inIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
PCDHA10Humanextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
PCDHA10Humanmembrane located_inIEAUniProtKB:Q91Y11 and ensembl:ENSMUSP00000111323150520179 EnsemblGO_REF:0000107
PCDHA10Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
PCDHA10Humanmembrane located_inIEAInterPro:IPR002126 and InterPro:IPR015919150520179 InterProGO_REF:0000002
PCDHA10Humanplasma membrane located_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDHA10Humanplasma membrane is_active_inIBAMGI:106671 more ...150520179 GO_CentralGO_REF:0000033
PCDHA10Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
PCDHA10Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
PCDHA10Humanplasma membrane located_inTAS 150520179 PMID:10380929PINCPMID:10380929
1 to 11 of 11 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10Humancalcium ion binding enablesIEAInterPro:IPR002126 and InterPro:IPR015919150520179 InterProGO_REF:0000002

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDHA10HumanProstate cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Prostatic cancerClinVarPMID:23265383
PCDHA10HumanThrombocytosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ThrombocytosisClinVarPMID:25741868

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10380929   PMID:10662547   PMID:10716726   PMID:10817752   PMID:10835267   PMID:11230163   PMID:12477932   PMID:15372022   PMID:16344560   PMID:17474147   PMID:21873635   PMID:22589738  
PMID:28514442   PMID:28625976   PMID:33961781  



PCDHA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,855,897 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,855,883 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,235,482 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,215,818 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,215,817 - 140,372,113NCBI
Celera5136,312,442 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,380,373 - 135,536,628 (+)NCBIHuRef
CHM1_15139,668,823 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,381,222 - 141,537,634 (+)NCBIT2T-CHM13v2.0
Pcdha9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,130,933 - 37,320,710 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,130,933 - 37,320,710 (+)EnsemblGRCm39 Ensembl
GRCm381836,997,880 - 37,187,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,997,880 - 37,187,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv371837,157,534 - 37,347,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,123,854 - 37,313,631 (+)NCBIMGSCv36mm8
MGSCv361837,184,986 - 37,374,763 (+)NCBIMGSCv36mm8
Celera1837,444,653 - 37,447,133 (+)NCBICelera
Cytogenetic Map18B2- B3NCBI
cM Map1819.46NCBI
Pcdha10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1828,581,225 - 28,846,211 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01830,010,918 - 30,215,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,987,206 - 30,215,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,708,168 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,721,603 - 29,928,030 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,748,724 - 29,748,983 (+)NCBI
Celera1828,349,751 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI
PCDHA10
(Pan paniscus - bonobo/pygmy chimpanzee)		 No map positions available.
PCDHA10
(Canis lupus familiaris - dog)		 No map positions available.

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Variants in PCDHA10
561 total Variants

1 to 10 of 599 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2		 pathogenic
GRCh38/hg38 5q31.2-32(chr5:138871137-145812309)x1 copy number loss See cases [RCV000052142] Chr5:138871137..145812309 [GRCh38]
Chr5:138206826..145191872 [GRCh37]
Chr5:138234725..145172065 [NCBI36]
Chr5:5q31.2-32		 pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2		 pathogenic
NM_018898.3(PCDHAC1):c.1672C>T (p.Pro558Ser) single nucleotide variant Malignant melanoma [RCV000061140] Chr5:140928564 [GRCh38]
Chr5:140308149 [GRCh37]
Chr5:140288333 [NCBI36]
Chr5:5q31.3		 not provided
NM_018901.3(PCDHA10):c.803C>T (p.Ser268Leu) single nucleotide variant Malignant melanoma [RCV000061137] Chr5:140856851 [GRCh38]
Chr5:140236436 [GRCh37]
Chr5:140216620 [NCBI36]
Chr5:5q31.3		 not provided
NM_018904.2(PCDHA13):c.1372C>T (p.Pro458Ser) single nucleotide variant Malignant melanoma [RCV000061138] Chr5:140883640 [GRCh38]
Chr5:140263225 [GRCh37]
Chr5:140243409 [NCBI36]
Chr5:5q31.3		 not provided
NM_018898.3(PCDHAC1):c.1559G>C (p.Gly520Ala) single nucleotide variant Malignant melanoma [RCV000061139] Chr5:140928451 [GRCh38]
Chr5:140308036 [GRCh37]
Chr5:140288220 [NCBI36]
Chr5:5q31.3		 not provided
NM_018901.3(PCDHA10):c.845C>T (p.Ser282Phe) single nucleotide variant Malignant melanoma [RCV000066683] Chr5:140856893 [GRCh38]
Chr5:140236478 [GRCh37]
Chr5:140216662 [NCBI36]
Chr5:5q31.3		 not provided
NM_018901.3(PCDHA10):c.2070C>T (p.Ala690=) single nucleotide variant Malignant melanoma [RCV000066684] Chr5:140858118 [GRCh38]
Chr5:140237703 [GRCh37]
Chr5:140217887 [NCBI36]
Chr5:5q31.3		 not provided
NM_018903.3(PCDHA12):c.955C>T (p.Gln319Ter) single nucleotide variant Malignant melanoma [RCV000066685] Chr5:140876427 [GRCh38]
Chr5:140256012 [GRCh37]
Chr5:140236196 [NCBI36]
Chr5:5q31.3		 not provided
1 to 10 of 599 rows

Predicted Target Of
Summary Value
Count of predictions:1966
Count of miRNA genes:690
Interacting mature miRNAs:825
Transcripts:ENST00000307360, ENST00000506939
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597494605GWAS1590679_Hsystolic blood pressure QTL GWAS1590679 (human)3e-09systolic blood pressuresystolic blood pressure (CMO:0000004)5140928384140928385Human
597512317GWAS1608391_Hsystolic blood pressure QTL GWAS1608391 (human)1e-11systolic blood pressuresystolic blood pressure (CMO:0000004)5140928384140928385Human
597404363GWAS1500437_Hvital capacity QTL GWAS1500437 (human)7e-10vital capacity5140937818140937819Human
597490077GWAS1586151_Hpulse pressure measurement QTL GWAS1586151 (human)2e-12pulse pressure measurementpulse pressure (CMO:0000292)5140928384140928385Human
597408810GWAS1504884_Hschizophrenia QTL GWAS1504884 (human)5e-10schizophrenia5140954367140954368Human
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human
597413949GWAS1510023_HAbnormality of refraction QTL GWAS1510023 (human)2e-14Abnormality of refraction5140937786140937787Human
597523252GWAS1619326_Hintelligence QTL GWAS1619326 (human)8e-09intelligence5140861442140861443Human
597442294GWAS1538368_H1,5 anhydroglucitol measurement QTL GWAS1538368 (human)0.0000041,5 anhydroglucitol measurement5140929096140929097Human
597489431GWAS1585505_Hpulse pressure measurement QTL GWAS1585505 (human)6e-10pulse pressure measurementpulse pressure (CMO:0000292)5140928384140928385Human

1 to 10 of 12 rows
D5S658  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,372,916 - 140,373,189UniSTSGRCh37
Build 365140,353,100 - 140,353,373RGDNCBI36
Celera5136,449,700 - 136,449,973RGD
Cytogenetic Map5q31UniSTS
HuRef5135,517,629 - 135,517,894UniSTS
Marshfield Genetic Map5142.92RGD
Marshfield Genetic Map5142.92UniSTS
Genethon Genetic Map5142.6UniSTS
Whitehead-RH Map5441.7UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5889.1UniSTS
RH91795  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,389,215 - 140,389,359UniSTSGRCh37
Build 365140,369,399 - 140,369,543RGDNCBI36
Celera5136,465,994 - 136,466,138RGD
Cytogenetic Map5q31UniSTS
HuRef5135,533,914 - 135,534,058UniSTS
GeneMap99-GB4 RH Map5530.5UniSTS
RH122893  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,344,075 - 140,344,397UniSTSGRCh37
Build 365140,324,259 - 140,324,581RGDNCBI36
Celera5136,420,859 - 136,421,181RGD
Cytogenetic Map5q31UniSTS
HuRef5135,488,790 - 135,489,112UniSTS
TNG Radiation Hybrid Map565054.0UniSTS
RH118816  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,365,779 - 140,366,073UniSTSGRCh37
Build 365140,345,963 - 140,346,257RGDNCBI36
Celera5136,442,563 - 136,442,857RGD
Cytogenetic Map5q31UniSTS
HuRef5135,510,494 - 135,510,788UniSTS
TNG Radiation Hybrid Map565069.0UniSTS
D5S546  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,240,136 - 140,240,231UniSTSGRCh37
Build 365140,220,320 - 140,220,415RGDNCBI36
Celera5136,316,944 - 136,317,039RGD
Cytogenetic Map5q31UniSTS
HuRef5135,384,875 - 135,384,970UniSTS
D5S1683E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,021 - 140,390,212UniSTSGRCh37
Build 365140,370,205 - 140,370,396RGDNCBI36
Celera5136,466,800 - 136,466,991RGD
Cytogenetic Map5q31UniSTS
HuRef5135,534,720 - 135,534,911UniSTS
SHGC-150174  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,372,907 - 140,373,191UniSTSGRCh37
Build 365140,353,091 - 140,353,375RGDNCBI36
Celera5136,449,691 - 136,449,975RGD
Cytogenetic Map5q31UniSTS
HuRef5135,517,620 - 135,517,896UniSTS
TNG Radiation Hybrid Map565089.0UniSTS
TNG Radiation Hybrid Map174062.0UniSTS
bac5366T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,362,911 - 140,363,118UniSTSGRCh37
Build 365140,343,095 - 140,343,302RGDNCBI36
Celera5136,439,695 - 136,439,902RGD
Cytogenetic Map5q31UniSTS
HuRef5135,507,626 - 135,507,833UniSTS
bac5373T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,363,259 - 140,363,393UniSTSGRCh37
Build 365140,343,443 - 140,343,577RGDNCBI36
Celera5136,440,043 - 136,440,177RGD
Cytogenetic Map5q31UniSTS
HuRef5135,507,974 - 135,508,108UniSTS
PMC311048P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,362,060 - 140,362,148UniSTSGRCh37
Build 365140,342,244 - 140,342,332RGDNCBI36
Celera5136,438,844 - 136,438,932RGD
HuRef5135,506,775 - 135,506,863UniSTS
PCDHA4_1031  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,470 - 140,391,194UniSTSGRCh37
Build 365140,370,654 - 140,371,378RGDNCBI36
Celera5136,467,249 - 136,467,973RGD
HuRef5135,535,169 - 135,535,893UniSTS
A004B11  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,307,787 - 140,307,943UniSTSGRCh37
Build 365140,287,971 - 140,288,127RGDNCBI36
Celera5136,384,600 - 136,384,756RGD
Cytogenetic Map5q31UniSTS
HuRef5135,452,522 - 135,452,678UniSTS
GeneMap99-GB4 RH Map5531.62UniSTS
NCBI RH Map5889.1UniSTS
RH15971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,200 - 140,390,359UniSTSGRCh37
Build 365140,370,384 - 140,370,543RGDNCBI36
Celera5136,466,979 - 136,467,138RGD
Cytogenetic Map5q31UniSTS
HuRef5135,534,899 - 135,535,058UniSTS
GeneMap99-GB4 RH Map5531.42UniSTS
NCBI RH Map5889.1UniSTS
IB766  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,391,639 - 140,391,867UniSTSGRCh37
Build 365140,371,823 - 140,372,051RGDNCBI36
Celera5136,468,418 - 136,468,646RGD
Cytogenetic Map5q31UniSTS
HuRef5135,536,338 - 135,536,566UniSTS
GeneMap99-GB4 RH Map5531.42UniSTS
Whitehead-RH Map5441.7UniSTS
NCBI RH Map5889.1UniSTS
WI-19540  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,391,613 - 140,391,874UniSTSGRCh37
Build 365140,371,797 - 140,372,058RGDNCBI36
Celera5136,468,392 - 136,468,653RGD
Cytogenetic Map5q31UniSTS
HuRef5135,536,312 - 135,536,573UniSTS
GeneMap99-GB4 RH Map5531.72UniSTS
Whitehead-RH Map5441.7UniSTS
NCBI RH Map5889.1UniSTS
RH65516  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,919 - 140,391,093UniSTSGRCh37
Build 365140,371,103 - 140,371,277RGDNCBI36
Celera5136,467,698 - 136,467,872RGD
Cytogenetic Map5q31UniSTS
HuRef5135,535,618 - 135,535,792UniSTS
GeneMap99-GB4 RH Map5527.13UniSTS
NCBI RH Map5889.1UniSTS
PCDHAC1__5835  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,308,699 - 140,309,481UniSTSGRCh37
Build 365140,288,883 - 140,289,665RGDNCBI36
Celera5136,385,512 - 136,386,294RGD
HuRef5135,453,434 - 135,454,216UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2337 2679 2187 4909 1534 2127 5 442 981 285 2218 5856 5422 38 3725 1 775 1673 1574 169 1


1 to 16 of 16 rows
RefSeq Transcripts NG_000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC010223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF152306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF152475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF169689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA503193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENST00000307360   ⟹   ENSP00000304234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,855,897 - 141,012,347 (+)Ensembl
Ensembl Acc Id: ENST00000506939   ⟹   ENSP00000421030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,856,010 - 141,011,628 (+)Ensembl
Ensembl Acc Id: ENST00000562220   ⟹   ENSP00000478748
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,855,883 - 140,868,240 (+)Ensembl
Ensembl Acc Id: ENST00000673459   ⟹   ENSP00000500875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,858,216 - 141,009,850 (+)Ensembl
RefSeq Acc Id: NM_018901   ⟹   NP_061724
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,855,897 - 141,012,347 (+)NCBI
GRCh375140,235,634 - 140,391,929 (+)RGD
Build 365140,215,818 - 140,372,113 (+)NCBI Archive
Celera5136,312,442 - 136,468,708 (+)RGD
HuRef5135,380,207 - 135,536,628 (+)NCBI
CHM1_15139,668,657 - 139,825,092 (+)NCBI
T2T-CHM13v2.05141,381,222 - 141,537,634 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031859   ⟹   NP_114065
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,855,897 - 140,868,240 (+)NCBI
GRCh375140,235,634 - 140,391,929 (+)RGD
Build 365140,215,818 - 140,218,352 (+)NCBI Archive
Celera5136,312,442 - 136,468,708 (+)RGD
HuRef5135,380,207 - 135,536,628 (+)NCBI
CHM1_15139,668,657 - 139,671,357 (+)NCBI
T2T-CHM13v2.05141,381,222 - 141,393,565 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031860   ⟹   NP_114066
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,855,897 - 141,012,347 (+)NCBI
GRCh375140,235,634 - 140,391,929 (+)RGD
Build 365140,215,818 - 140,372,113 (+)NCBI Archive
Celera5136,312,442 - 136,468,708 (+)RGD
HuRef5135,380,207 - 135,536,628 (+)NCBI
CHM1_15139,668,657 - 139,825,092 (+)NCBI
T2T-CHM13v2.05141,381,222 - 141,537,634 (+)NCBI
Sequence:
RefSeq Acc Id: NP_061724   ⟸   NM_018901
- Peptide Label: isoform 1 precursor
- UniProtKB: O75280 (UniProtKB/Swiss-Prot),   A1L493 (UniProtKB/Swiss-Prot),   Q9NRU2 (UniProtKB/Swiss-Prot),   Q9Y5I2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_114066   ⟸   NM_031860
- Peptide Label: isoform 3 precursor
- UniProtKB: Q9Y5I2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_114065   ⟸   NM_031859
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9Y5I2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000500875   ⟸   ENST00000673459
Ensembl Acc Id: ENSP00000304234   ⟸   ENST00000307360
Cadherin

Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y5I2-F1-model_v2 AlphaFold Q9Y5I2 1-948 view protein structure

RGD ID:6870900
Promoter ID:EPDNEW_H8614
Type:initiation region
Name:PCDHA10_1
Description:protocadherin alpha 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8615  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,855,929 - 140,855,989EPDNEW
RGD ID:6870902
Promoter ID:EPDNEW_H8615
Type:initiation region
Name:PCDHA10_2
Description:protocadherin alpha 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8614  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,858,140 - 140,858,200EPDNEW


1 to 40 of 46 rows
Database
Acc Id
Source(s)
COSMIC PCDHA10 COSMIC
Ensembl Genes ENSG00000250120 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000291659 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000307360 ENTREZGENE
  ENST00000307360.6 UniProtKB/Swiss-Prot
  ENST00000506939 ENTREZGENE
  ENST00000506939.6 UniProtKB/Swiss-Prot
  ENST00000562220 ENTREZGENE
  ENST00000562220.2 UniProtKB/Swiss-Prot
  ENST00000708311.1 UniProtKB/Swiss-Prot
  ENST00000708312.1 UniProtKB/Swiss-Prot
  ENST00000708313.1 UniProtKB/Swiss-Prot
Gene3D-CATH Cadherins UniProtKB/Swiss-Prot
GTEx ENSG00000250120 GTEx
  ENSG00000291659 GTEx
HGNC ID HGNC:8664 ENTREZGENE
Human Proteome Map PCDHA10 Human Proteome Map
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  Cadherin_CBD UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot
  Cadherin_N UniProtKB/Swiss-Prot
  Protocadherin/Cadherin-CA UniProtKB/Swiss-Prot
KEGG Report hsa:56139 UniProtKB/Swiss-Prot
NCBI Gene 56139 ENTREZGENE
OMIM 606316 OMIM
PANTHER CADHERIN-87A UniProtKB/Swiss-Prot
  PROTOCADHERIN ALPHA-10 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  Cadherin_2 UniProtKB/Swiss-Prot
  Cadherin_tail UniProtKB/Swiss-Prot
PharmGKB PA33010 PharmGKB
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
UniProt A0A5F9ZI55_HUMAN UniProtKB/TrEMBL
  A1L493 ENTREZGENE
  O75280 ENTREZGENE
1 to 40 of 46 rows