Pcdh10 (protocadherin 10) - Rat Genome Database

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Gene: Pcdh10 (protocadherin 10) Mus musculus
Analyze
Symbol: Pcdh10
Name: protocadherin 10
RGD ID: 1557192
MGI Page MGI
Description: Acts upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Is expressed in central nervous system; dorsal root ganglion; genitourinary system; jaw bone; and rib. Orthologous to human PCDH10 (protocadherin 10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430521D13Rik; 6430703F07Rik; mKIAA1400; OL; OL-pc; OL-protocadherin; Olpc; protocadherin-10
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39345,332,833 - 45,389,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl345,332,833 - 45,390,058 (+)EnsemblGRCm39 Ensembl
GRCm38345,378,398 - 45,434,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl345,378,398 - 45,435,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv37345,182,320 - 45,238,501 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36345,474,806 - 45,479,230 (+)NCBIMGSCv36mm8
Celera345,037,595 - 45,093,756 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map320.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9920663   PMID:10349636   PMID:10835267   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15882583   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16774995  
PMID:17721516   PMID:18644894   PMID:19262141   PMID:21267068   PMID:21873635   PMID:22982106   PMID:23260144   PMID:24194600   PMID:24351932   PMID:24496616   PMID:24952961   PMID:25977363  
PMID:26490861   PMID:26880563   PMID:27567313   PMID:27779093   PMID:28434291   PMID:28542916   PMID:28558017   PMID:28844789   PMID:29379870   PMID:29513653   PMID:30004589   PMID:30797034  
PMID:31891184   PMID:32515350   PMID:32561725   PMID:33055198   PMID:33340671   PMID:33576044   PMID:34145365   PMID:34321999   PMID:35793630   PMID:36538983  


Genomics

Comparative Map Data
Pcdh10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39345,332,833 - 45,389,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl345,332,833 - 45,390,058 (+)EnsemblGRCm39 Ensembl
GRCm38345,378,398 - 45,434,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl345,378,398 - 45,435,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv37345,182,320 - 45,238,501 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36345,474,806 - 45,479,230 (+)NCBIMGSCv36mm8
Celera345,037,595 - 45,093,756 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map320.35NCBI
PCDH10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384133,149,294 - 133,208,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4133,149,294 - 133,208,606 (+)EnsemblGRCh38hg38GRCh38
GRCh374134,070,449 - 134,115,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364134,289,920 - 134,332,182 (+)NCBINCBI36Build 36hg18NCBI36
Build 344134,428,074 - 134,470,336NCBI
Celera4131,409,480 - 131,451,744 (+)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4129,799,227 - 129,841,484 (+)NCBIHuRef
CHM1_14134,046,945 - 134,089,210 (+)NCBICHM1_1
T2T-CHM13v2.04136,472,535 - 136,531,845 (+)NCBIT2T-CHM13v2.0
Pcdh10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82130,553,432 - 130,619,591 (+)NCBIGRCr8
mRatBN7.22128,617,212 - 128,683,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2128,617,174 - 128,677,190 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02136,992,355 - 137,017,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2136,993,208 - 137,014,492 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02156,481,902 - 156,505,195 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42132,890,164 - 132,932,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2126,100,636 - 126,125,570 (+)NCBICelera
Cytogenetic Map2q26NCBI
Pcdh10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554289,433,478 - 9,495,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554289,433,478 - 9,495,260 (-)NCBIChiLan1.0ChiLan1.0
PCDH10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23130,961,798 - 131,020,265 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14131,357,352 - 131,416,321 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04125,460,202 - 125,519,514 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14136,708,715 - 136,753,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4136,709,572 - 136,722,801 (+)Ensemblpanpan1.1panPan2
PCDH10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,671,750 - 8,732,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,691,727 - 8,731,690 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,845,071 - 8,906,078 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,734,170 - 8,795,507 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,734,589 - 8,794,538 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,657,959 - 8,718,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,018,006 - 9,078,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,453,748 - 9,515,017 (-)NCBIUU_Cfam_GSD_1.0
Pcdh10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530157,631,764 - 57,693,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366811,002,166 - 1,040,392 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366811,001,223 - 1,058,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl893,002,562 - 93,046,693 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1893,023,079 - 93,047,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2899,226,414 - 99,230,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1780,184,414 - 80,227,184 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl780,184,388 - 80,225,757 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603759,460,966 - 59,524,125 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477713,693,873 - 13,747,830 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477713,693,964 - 13,747,504 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcdh10
1646 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1391
Count of miRNA genes:687
Interacting mature miRNAs:842
Transcripts:ENSMUST00000166126, ENSMUST00000170695, ENSMUST00000171554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33332720145916479Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse

Markers in Region
RH144024  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38345,423,366 - 45,423,534UniSTSGRCm38
MGSCv37345,227,288 - 45,227,456UniSTSGRCm37
Celera345,082,527 - 45,082,695UniSTS
Cytogenetic Map3CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001098170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA386527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF334801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U88549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000166126   ⟹   ENSMUSP00000131073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl345,332,860 - 45,390,058 (+)Ensembl
GRCm38.p6 Ensembl345,378,425 - 45,435,623 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170695   ⟹   ENSMUSP00000132769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl345,332,862 - 45,378,146 (+)Ensembl
GRCm38.p6 Ensembl345,378,427 - 45,423,711 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171554   ⟹   ENSMUSP00000131600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl345,332,841 - 45,357,080 (+)Ensembl
GRCm38.p6 Ensembl345,378,406 - 45,402,645 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193252   ⟹   ENSMUSP00000141529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl345,332,833 - 45,337,470 (+)Ensembl
GRCm38.p6 Ensembl345,378,398 - 45,383,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl345,337,068 - 45,386,928 (+)Ensembl
GRCm38.p6 Ensembl345,382,633 - 45,432,493 (+)Ensembl
RefSeq Acc Id: NM_001098170   ⟹   NP_001091640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39345,332,833 - 45,389,014 (+)NCBI
GRCm38345,378,398 - 45,434,579 (+)ENTREZGENE
MGSCv37345,182,320 - 45,238,501 (+)RGD
Celera345,037,595 - 45,093,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001098171   ⟹   NP_001091641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39345,332,833 - 45,378,146 (+)NCBI
GRCm38345,378,398 - 45,423,711 (+)NCBI
MGSCv37345,182,320 - 45,238,501 (+)RGD
Celera345,037,595 - 45,093,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001098172   ⟹   NP_001091642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39345,332,833 - 45,354,033 (+)NCBI
GRCm38345,378,398 - 45,399,598 (+)NCBI
MGSCv37345,182,320 - 45,238,501 (+)RGD
Celera345,037,595 - 45,093,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011043   ⟹   NP_035173
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39345,332,833 - 45,337,470 (+)NCBI
GRCm38345,378,398 - 45,383,035 (+)NCBI
MGSCv37345,182,320 - 45,238,501 (+)RGD
Celera345,037,595 - 45,093,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035173   ⟸   NM_011043
- Peptide Label: isoform 4 precursor
- UniProtKB: Q6P0A6 (UniProtKB/TrEMBL),   Q9Z1B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091640   ⟸   NM_001098170
- Peptide Label: isoform 1 precursor
- UniProtKB: E9PXQ7 (UniProtKB/TrEMBL),   Q80TE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091641   ⟸   NM_001098171
- Peptide Label: isoform 3 precursor
- UniProtKB: Q80TE2 (UniProtKB/TrEMBL),   Q925I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091642   ⟸   NM_001098172
- Peptide Label: isoform 2 precursor
- UniProtKB: E9PX28 (UniProtKB/TrEMBL),   Q80TE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000131073   ⟸   ENSMUST00000166126
RefSeq Acc Id: ENSMUSP00000131600   ⟸   ENSMUST00000171554
RefSeq Acc Id: ENSMUSP00000132769   ⟸   ENSMUST00000170695
RefSeq Acc Id: ENSMUSP00000141529   ⟸   ENSMUST00000193252
Protein Domains
Cadherin   Cadherin cytoplasmic C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PXQ7-F1-model_v2 AlphaFold E9PXQ7 1-1057 view protein structure

Promoters
RGD ID:6834249
Promoter ID:MM_KWN:34230
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:AK012035_2610316D01RIK,   ENSMUST00000051181,   NM_001098170,   NM_001098171,   NM_001098172,   NM_011043,   UC008PCX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36345,182,321 - 45,185,922 (+)MPROMDB
RGD ID:6880582
Promoter ID:EPDNEW_M3742
Type:multiple initiation site
Name:Pcdh10_1
Description:Mus musculus protocadherin 10 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38345,378,406 - 45,378,466EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338042 AgrOrtholog
Ensembl Genes ENSMUSG00000049100 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000166126 ENTREZGENE
  ENSMUST00000166126.7 UniProtKB/TrEMBL
  ENSMUST00000170695 ENTREZGENE
  ENSMUST00000170695.4 UniProtKB/TrEMBL
  ENSMUST00000171554 ENTREZGENE
  ENSMUST00000171554.8 UniProtKB/TrEMBL
  ENSMUST00000193252 ENTREZGENE
  ENSMUST00000193252.2 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
KEGG Report mmu:18526 UniProtKB/TrEMBL
MGD MGI:1338042 ENTREZGENE
NCBI Gene 18526 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PTHR24028:SF0 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
PhenoGen Pcdh10 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt E9PX28 ENTREZGENE, UniProtKB/TrEMBL
  E9PXQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q3TZ28_MOUSE UniProtKB/TrEMBL
  Q6P0A6 ENTREZGENE, UniProtKB/TrEMBL
  Q80TE2 ENTREZGENE, UniProtKB/TrEMBL
  Q8CA99_MOUSE UniProtKB/TrEMBL
  Q8CC37_MOUSE UniProtKB/TrEMBL
  Q925I8 ENTREZGENE, UniProtKB/TrEMBL
  Q9CU33_MOUSE UniProtKB/TrEMBL
  Q9Z1B1 ENTREZGENE, UniProtKB/TrEMBL