PRM1 (protamine 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PRM1 (protamine 1) Homo sapiens
Analyze
Symbol: PRM1
Name: protamine 1
RGD ID: 1350304
HGNC Page HGNC:9447
Description: Predicted to enable DNA binding activity. Predicted to be involved in chromosome organization and spermatogenesis. Predicted to act upstream of or within nucleus organization and spermatid development. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cancer/testis antigen family 94, member 1; CT94.1; cysteine-rich protamine; P1; sperm protamine P1; testicular tissue protein Li 91; testis specific protamine 1
RGD Orthologs
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,280,841 - 11,281,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,280,841 - 11,281,330 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,374,698 - 11,375,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,282,194 - 11,282,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341611,282,199 - 11,282,685NCBI
Celera1611,544,077 - 11,544,576 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,292,416 - 11,292,915 (-)NCBIHuRef
CHM1_11611,374,599 - 11,375,098 (-)NCBICHM1_1
T2T-CHM13v2.01611,317,056 - 11,317,545 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
DNA binding  (IEA,TAS)
protein binding  (IPI)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2081589   PMID:2370044   PMID:2613245   PMID:3527226   PMID:3658707   PMID:4027356   PMID:7721781   PMID:7865133   PMID:7983046   PMID:8263493   PMID:8466000   PMID:8647104  
PMID:8662749   PMID:10390541   PMID:10659848   PMID:12477932   PMID:12569175   PMID:14701833   PMID:15489334   PMID:16112646   PMID:16989827   PMID:17011555   PMID:17494104   PMID:18292840  
PMID:18292846   PMID:18309899   PMID:18314125   PMID:18381856   PMID:18390561   PMID:18478156   PMID:18692784   PMID:19602509   PMID:19863670   PMID:20378615   PMID:21029114   PMID:21317160  
PMID:22104739   PMID:22190364   PMID:22472940   PMID:22574365   PMID:23079002   PMID:23251661   PMID:23568457   PMID:25536093   PMID:25649960   PMID:26092210   PMID:27027467   PMID:27216534  
PMID:28736810   PMID:28854581   PMID:29140788   PMID:29227750   PMID:30482464   PMID:31286559   PMID:32296183   PMID:33057064   PMID:33118225   PMID:33427330   PMID:33440036   PMID:36217675  
PMID:36593375   PMID:37321532   PMID:38170186  


Genomics

Comparative Map Data
PRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,280,841 - 11,281,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,280,841 - 11,281,330 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,374,698 - 11,375,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,282,194 - 11,282,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341611,282,199 - 11,282,685NCBI
Celera1611,544,077 - 11,544,576 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,292,416 - 11,292,915 (-)NCBIHuRef
CHM1_11611,374,599 - 11,375,098 (-)NCBICHM1_1
T2T-CHM13v2.01611,317,056 - 11,317,545 (-)NCBIT2T-CHM13v2.0
Prm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,614,196 - 10,614,687 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,614,190 - 10,623,703 (-)EnsemblGRCm39 Ensembl
GRCm381610,796,332 - 10,796,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,796,326 - 10,805,839 (-)EnsemblGRCm38mm10GRCm38
MGSCv371610,796,425 - 10,796,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,709,910 - 10,710,401 (-)NCBIMGSCv36mm8
Celera1611,423,762 - 11,424,253 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.87NCBI
Prm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,378,740 - 5,379,235 (+)NCBIGRCr8
mRatBN7.2104,871,817 - 4,872,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx109,568,484 - 9,568,730 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0109,089,600 - 9,089,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0104,727,881 - 4,728,127 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0104,945,995 - 4,946,241 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl104,945,911 - 4,946,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,772,481 - 3,772,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,808,354 - 4,808,600 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera103,893,505 - 3,893,751 (+)NCBICelera
Cytogenetic Map10q11NCBI
PRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21811,829,110 - 11,831,298 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11615,599,576 - 15,601,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,222,779 - 10,223,289 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11611,444,606 - 11,445,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,861,087 - 31,861,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,861,087 - 31,861,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,650,583 - 32,651,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,758,057 - 10,758,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606819,405,264 - 19,405,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in PRM1
8 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16p13.3-13.13(chr16:23141-11296695)x3 copy number gain See cases [RCV000052367] Chr16:23141..11296695 [GRCh38]
Chr16:73141..11390552 [GRCh37]
Chr16:13141..11298053 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.3-11.2(chr16:4644892-29170820)x3 copy number gain See cases [RCV000133809] Chr16:4644892..29170820 [GRCh38]
Chr16:4694893..29182141 [GRCh37]
Chr16:4634894..29089642 [NCBI36]
Chr16:16p13.3-11.2		 pathogenic
GRCh38/hg38 16p13.3-13.13(chr16:46766-11525516)x3 copy number gain See cases [RCV000133780] Chr16:46766..11525516 [GRCh38]
Chr16:96766..11619372 [GRCh37]
Chr16:36766..11526873 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.13(chr16:10778551-11374173)x3 copy number gain See cases [RCV000137607] Chr16:10778551..11374173 [GRCh38]
Chr16:10872408..11468030 [GRCh37]
Chr16:10779909..11375531 [NCBI36]
Chr16:16p13.13		 likely benign
GRCh38/hg38 16p13.3-13.12(chr16:43732-13326806)x3 copy number gain See cases [RCV000139166] Chr16:43732..13326806 [GRCh38]
Chr16:93732..13420663 [GRCh37]
Chr16:33732..13328164 [NCBI36]
Chr16:16p13.3-13.12		 pathogenic
GRCh38/hg38 16p13.3-13.11(chr16:666662-15743104)x3 copy number gain See cases [RCV000143710] Chr16:666662..15743104 [GRCh38]
Chr16:716662..15836961 [GRCh37]
Chr16:656663..15744462 [NCBI36]
Chr16:16p13.3-13.11		 pathogenic
GRCh37/hg19 16p13.13(chr16:11173868-11681288)x3 copy number gain See cases [RCV000240209] Chr16:11173868..11681288 [GRCh37]
Chr16:16p13.13		 uncertain significance
GRCh37/hg19 16p13.3-11.2(chr16:102839-28327676)x3 copy number gain See cases [RCV000203445] Chr16:102839..28327676 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:1279324-31926800)x3 copy number gain Breast ductal adenocarcinoma [RCV000207053] Chr16:1279324..31926800 [GRCh37]
Chr16:16p13.3-11.2		 uncertain significance
GRCh37/hg19 16p13.3-12.3(chr16:1274615-19073133)x3 copy number gain Breast ductal adenocarcinoma [RCV000207326] Chr16:1274615..19073133 [GRCh37]
Chr16:16p13.3-12.3		 uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.2-13.13(chr16:9631472-12128275)x3 copy number gain See cases [RCV000511571] Chr16:9631472..12128275 [GRCh37]
Chr16:16p13.2-13.13		 uncertain significance
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3		 uncertain significance
maternal UPD(16p) complex Hemimegalencephaly [RCV000494707] Chr16:1280042..33710558 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-12.3(chr16:85880-19806921)x3 copy number gain See cases [RCV000512194] Chr16:85880..19806921 [GRCh37]
Chr16:16p13.3-12.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
NM_002761.3(PRM1):c.16T>A (p.Cys6Ser) single nucleotide variant Inborn genetic diseases [RCV003273595] Chr16:11281223 [GRCh38]
Chr16:11375080 [GRCh37]
Chr16:16p13.13		 uncertain significance
GRCh37/hg19 16p13.3-12.2(chr16:85880-22442007)x3 copy number gain See cases [RCV000511360] Chr16:85880..22442007 [GRCh37]
Chr16:16p13.3-12.2		 pathogenic
GRCh37/hg19 16p13.13(chr16:10529891-11889585)x3 copy number gain not provided [RCV000683759] Chr16:10529891..11889585 [GRCh37]
Chr16:16p13.13		 uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.13(chr16:11124777-11387164)x1 copy number loss not provided [RCV000846621] Chr16:11124777..11387164 [GRCh37]
Chr16:16p13.13		 uncertain significance
NC_000016.9:g.(?_8829597)_(11683693_?)dup duplication Landau-Kleffner syndrome [RCV003105356] Chr16:8829597..11683693 [GRCh37]
Chr16:16p13.2-13.13		 uncertain significance
GRCh37/hg19 16p13.3-11.2(chr16:4380767-30445350)x3 copy number gain not provided [RCV002472599] Chr16:4380767..30445350 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
NC_000016.10:g.11281429G>T single nucleotide variant not provided [RCV001596063] Chr16:11281429 [GRCh38]
Chr16:11375286 [GRCh37]
Chr16:16p13.13		 benign
NM_002761.3(PRM1):c.139C>A (p.Arg47=) single nucleotide variant not provided [RCV001686463] Chr16:11281009 [GRCh38]
Chr16:11374866 [GRCh37]
Chr16:16p13.13		 benign
GRCh37/hg19 16p13.3-11.2(chr16:5805001-34230001) copy number gain Microcephaly [RCV001252948] Chr16:5805001..34230001 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:2959279-30190593)x3 copy number gain See cases [RCV001263169] Chr16:2959279..30190593 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic|likely pathogenic
GRCh37/hg19 16p13.13-13.12(chr16:11364838-13592668) copy number gain not specified [RCV002052521] Chr16:11364838..13592668 [GRCh37]
Chr16:16p13.13-13.12		 uncertain significance
NC_000016.9:g.(?_8829597)_(11650586_?)dup duplication Charcot-Marie-Tooth disease type 1C [RCV003120793]|MHC class II deficiency [RCV002000309] Chr16:8829597..11650586 [GRCh37]
Chr16:16p13.2-13.13		 uncertain significance
GRCh37/hg19 16p13.2-13.13(chr16:10423631-12176517)x3 copy number gain not provided [RCV002474875] Chr16:10423631..12176517 [GRCh37]
Chr16:16p13.2-13.13		 uncertain significance
NM_002761.3(PRM1):c.41G>A (p.Arg14Lys) single nucleotide variant Inborn genetic diseases [RCV002869693] Chr16:11281198 [GRCh38]
Chr16:11375055 [GRCh37]
Chr16:16p13.13		 uncertain significance
NM_002761.3(PRM1):c.30G>C (p.Gln10His) single nucleotide variant Inborn genetic diseases [RCV002744383] Chr16:11281209 [GRCh38]
Chr16:11375066 [GRCh37]
Chr16:16p13.13		 uncertain significance
NM_002761.3(PRM1):c.68G>T (p.Arg23Leu) single nucleotide variant Inborn genetic diseases [RCV002764751] Chr16:11281171 [GRCh38]
Chr16:11375028 [GRCh37]
Chr16:16p13.13		 uncertain significance
NM_002761.3(PRM1):c.74G>A (p.Arg25Gln) single nucleotide variant Inborn genetic diseases [RCV002807558] Chr16:11281165 [GRCh38]
Chr16:11375022 [GRCh37]
Chr16:16p13.13		 uncertain significance
NM_002761.3(PRM1):c.34C>T (p.Arg12Trp) single nucleotide variant Inborn genetic diseases [RCV003263557] Chr16:11281205 [GRCh38]
Chr16:11375062 [GRCh37]
Chr16:16p13.13		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:119
Interacting mature miRNAs:119
Transcripts:ENST00000312511
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-12701  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371611,374,699 - 11,374,848UniSTSGRCh37
Build 361611,282,200 - 11,282,349RGDNCBI36
Celera1611,544,083 - 11,544,232RGD
Cytogenetic Map16p13.2UniSTS
HuRef1611,292,422 - 11,292,571UniSTS
TNG Radiation Hybrid Map165648.0UniSTS
GeneMap99-G3 RH Map16479.0UniSTS
PMC124363P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371611,374,726 - 11,375,089UniSTSGRCh37
Build 361611,282,227 - 11,282,590RGDNCBI36
Celera1611,544,110 - 11,544,473RGD
Cytogenetic Map16p13.2UniSTS
HuRef1611,292,449 - 11,292,812UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1 1 2 2 353 1 2
Medium 38 34 39 6 8 5 78 24 36 2 47 31 1 31 44
Low 1189 1068 830 264 542 157 1547 833 1215 61 472 626 107 470 960
Below cutoff 416 474 257 81 269 57 693 430 787 40 135 206 24 200 433 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_002761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB281136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC009121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF215707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY651260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD360017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC007228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M29706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ076543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ290766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ596414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S68144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U15422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z46940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000312511   ⟹   ENSP00000310515
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1611,280,841 - 11,281,330 (-)Ensembl
RefSeq Acc Id: NM_002761   ⟹   NP_002752
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381611,280,841 - 11,281,330 (-)NCBI
GRCh371611,374,693 - 11,375,192 (-)ENTREZGENE
Build 361611,282,194 - 11,282,693 (-)NCBI Archive
HuRef1611,292,416 - 11,292,915 (-)ENTREZGENE
CHM1_11611,374,599 - 11,375,098 (-)NCBI
T2T-CHM13v2.01611,317,056 - 11,317,545 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_002752   ⟸   NM_002761
- UniProtKB: P04553 (UniProtKB/Swiss-Prot),   Q3MN80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000310515   ⟸   ENST00000312511

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P04553-F1-model_v2 AlphaFold P04553 1-51 view protein structure

Promoters
RGD ID:7231335
Promoter ID:EPDNEW_H21413
Type:multiple initiation site
Name:PRM1_1
Description:protamine 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381611,281,330 - 11,281,390EPDNEW
RGD ID:6849418
Promoter ID:EP33037
Type:single initiation site
Name:HS_PRM1
Description:Protamine P1.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 154; Mammalian protamin P1.
Tissues & Cell Lines:spermatids
Experiment Methods:Primer extension
Position:
Human AssemblyChrPosition (strand)Source
Build 361611,282,689 - 11,282,749EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9447 AgrOrtholog
COSMIC PRM1 COSMIC
Ensembl Genes ENSG00000175646 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000312511 ENTREZGENE
  ENST00000312511.4 UniProtKB/Swiss-Prot
GTEx ENSG00000175646 GTEx
HGNC ID HGNC:9447 ENTREZGENE
Human Proteome Map PRM1 Human Proteome Map
InterPro Protamine_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5619 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 5619 ENTREZGENE
OMIM 182880 OMIM
Pfam Protamine_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA33792 PharmGKB
PROSITE PROTAMINE_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HSP1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q3MN80 ENTREZGENE, UniProtKB/TrEMBL